RNA–Protein interactions for RNA: ENST00000513643.5

RNF4-221, Transcript of ring finger protein 4, humanhuman

TSL 3

Gene RNF4, Length 516 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-221ENST00000513643 DPM3Q9P2X0 92 aa7.82□□□□□ -1.16
RNF4-221ENST00000513643 FBLN5Q9UBX5 448 aa7.82□□□□□ -1.16
RNF4-221ENST00000513643 TCF19Q9Y242 345 aa7.82□□□□□ -1.16
RNF4-221ENST00000513643 RRP15Q9Y3B9 282 aaKnown RBP7.82□□□□□ -1.16
RNF4-221ENST00000513643 LRRC42Q9Y546 428 aa7.82□□□□□ -1.16
RNF4-221ENST00000513643 TRAV1-2A0A0B4J238 106 aa7.81□□□□□ -1.16
RNF4-221ENST00000513643 TRDV1A0A1B0GX56 115 aa7.81□□□□□ -1.16
RNF4-221ENST00000513643 SHISA3A0PJX4 238 aa7.81□□□□□ -1.16
RNF4-221ENST00000513643 TMEM30CPA0ZSE6 113 aa7.81□□□□□ -1.16
RNF4-221ENST00000513643 FAM90A9PA6NNJ1 464 aa7.81□□□□□ -1.16
RNF4-221ENST00000513643 BUB1B-PAK6H3BSN5 160 aa7.81□□□□□ -1.16
RNF4-221ENST00000513643 F2RL2O00254 374 aa7.81□□□□□ -1.16
RNF4-221ENST00000513643 LDLRAD4O15165 306 aa7.81□□□□□ -1.16
RNF4-221ENST00000513643 CHST1O43916 411 aa7.81□□□□□ -1.16
RNF4-221ENST00000513643 CRYBA1P05813 215 aa7.81□□□□□ -1.16
RNF4-221ENST00000513643 HSMCR30P0CW71 290 aa7.81□□□□□ -1.16
RNF4-221ENST00000513643 JUNBP17275 347 aaPredicted RBP7.81□□□□□ -1.16
RNF4-221ENST00000513643 FUT3P21217 361 aa7.81□□□□□ -1.16
RNF4-221ENST00000513643 HTR1DP28221 377 aa7.81□□□□□ -1.16
RNF4-221ENST00000513643 HTR2CP28335 458 aa7.81□□□□□ -1.16
RNF4-221ENST00000513643 RAB13P51153 203 aa7.81□□□□□ -1.16
RNF4-221ENST00000513643 RPS27AP62979 156 aaKnown RBP7.81□□□□□ -1.16
RNF4-221ENST00000513643 SSX2Q16385 188 aa7.81□□□□□ -1.16
RNF4-221ENST00000513643 AWAT2Q6E213 333 aa7.81□□□□□ -1.16
RNF4-221ENST00000513643 TRAPPC6BQ86SZ2 158 aa7.81□□□□□ -1.16
RNF4-221ENST00000513643 LINC00311Q8N616 119 aa7.81□□□□□ -1.16
RNF4-221ENST00000513643 OR6M1Q8NGM8 313 aa7.81□□□□□ -1.16
RNF4-221ENST00000513643 MRGPRDQ8TDS7 321 aa7.81□□□□□ -1.16
RNF4-221ENST00000513643 SELENOIQ9C0D9 397 aa7.81□□□□□ -1.16
RNF4-221ENST00000513643 MBNL3Q9NUK0 354 aaKnown RBP7.81□□□□□ -1.16
RNF4-221ENST00000513643 IDI2-AS1Q9NZ38 188 aa7.81□□□□□ -1.16
RNF4-221ENST00000513643 MEGF8Q7Z7M0 2845 aa7.81□□□□□ -1.16
RNF4-221ENST00000513643 A0A0A6YYD4 124 aa7.8□□□□□ -1.16
RNF4-221ENST00000513643 TRAV39A0A0B4J263 110 aa7.8□□□□□ -1.16
RNF4-221ENST00000513643 BTBD17A6NE02 478 aa7.8□□□□□ -1.16
RNF4-221ENST00000513643 OOSP1A8MZH6 123 aa7.8□□□□□ -1.16
RNF4-221ENST00000513643 H3BUI4 141 aa7.8□□□□□ -1.16
RNF4-221ENST00000513643 J3QR06 171 aa7.8□□□□□ -1.16
RNF4-221ENST00000513643 SLC17A2O00624 439 aa7.8□□□□□ -1.16
RNF4-221ENST00000513643 PDCD6O75340 191 aa7.8□□□□□ -1.16
RNF4-221ENST00000513643 ARL6IP5O75915 188 aa7.8□□□□□ -1.16
RNF4-221ENST00000513643 BPNT1O95861 308 aa7.8□□□□□ -1.16
RNF4-221ENST00000513643 CHATP28329 748 aa7.8□□□□□ -1.16
RNF4-221ENST00000513643 SSTR5P35346 364 aa7.8□□□□□ -1.16
RNF4-221ENST00000513643 DYNC1I2Q13409 638 aaKnown RBP7.8□□□□□ -1.16
RNF4-221ENST00000513643 RBM39Q14498 530 aaKnown RBP7.8□□□□□ -1.16
RNF4-221ENST00000513643 Q3ZCU0 254 aa7.8□□□□□ -1.16
RNF4-221ENST00000513643 PRR31Q5SQ13 230 aa7.8□□□□□ -1.16
RNF4-221ENST00000513643 ATAD3CQ5T2N8 411 aa7.8□□□□□ -1.16
RNF4-221ENST00000513643 OR10K2Q6IF99 312 aa7.8□□□□□ -1.16
RNF4-221ENST00000513643 RAB12Q6IQ22 244 aa7.8□□□□□ -1.16
RNF4-221ENST00000513643 Q6ZPA2 131 aa7.8□□□□□ -1.16
RNF4-221ENST00000513643 ZNF554Q86TJ5 538 aa7.8□□□□□ -1.16
RNF4-221ENST00000513643 OR9G1Q8NH87 305 aa7.8□□□□□ -1.16
RNF4-221ENST00000513643 SGMS2Q8NHU3 365 aa7.8□□□□□ -1.16
RNF4-221ENST00000513643 RFESDQ8TAC1 157 aa7.8□□□□□ -1.16
RNF4-221ENST00000513643 KCNG3Q8TAE7 436 aa7.8□□□□□ -1.16
RNF4-221ENST00000513643 WIPF2Q8TF74 440 aaPredicted RBP7.8□□□□□ -1.16
RNF4-221ENST00000513643 CREB3L1Q96BA8 519 aa7.8□□□□□ -1.16
RNF4-221ENST00000513643 CST11Q9H112 138 aa7.8□□□□□ -1.16
RNF4-221ENST00000513643 MMP28Q9H239 520 aa7.8□□□□□ -1.16
RNF4-221ENST00000513643 Q9H521 79 aa7.8□□□□□ -1.16
RNF4-221ENST00000513643 RANBP3Q9H6Z4 567 aaPredicted RBP7.8□□□□□ -1.16
RNF4-221ENST00000513643 ZNF696Q9H7X3 374 aa7.8□□□□□ -1.16
RNF4-221ENST00000513643 ING3Q9NXR8 418 aa7.8□□□□□ -1.16
RNF4-221ENST00000513643 PSG11Q9UQ72 335 aa7.8□□□□□ -1.16
RNF4-221ENST00000513643 PEX16Q9Y5Y5 336 aa7.8□□□□□ -1.16
RNF4-221ENST00000513643 NOTCH1P46531 2555 aa7.79□□□□□ -1.16
RNF4-221ENST00000513643 LEUTXA8MZ59 168 aa7.79□□□□□ -1.16
RNF4-221ENST00000513643 C12orf77C9JDV5 145 aa7.79□□□□□ -1.16
RNF4-221ENST00000513643 MCRIP1C9JLW8 97 aa7.79□□□□□ -1.16
RNF4-221ENST00000513643 CRTAPO75718 401 aaPredicted RBP7.79□□□□□ -1.16
RNF4-221ENST00000513643 NAPSAO96009 420 aa7.79□□□□□ -1.16
RNF4-221ENST00000513643 FGF9P31371 208 aaPredicted RBP7.79□□□□□ -1.16
RNF4-221ENST00000513643 GLP1RP43220 463 aa7.79□□□□□ -1.16
RNF4-221ENST00000513643 EFNB2P52799 333 aa7.79□□□□□ -1.16
RNF4-221ENST00000513643 PRRX1P54821 245 aa7.79□□□□□ -1.16
RNF4-221ENST00000513643 TMEM50BP56557 158 aa7.79□□□□□ -1.16
RNF4-221ENST00000513643 HABP2Q14520 560 aaPredicted RBP7.79□□□□□ -1.16
RNF4-221ENST00000513643 FBLN7Q53RD9 439 aa7.79□□□□□ -1.16
RNF4-221ENST00000513643 TPTE2P1Q5T6R2 138 aa7.79□□□□□ -1.16
RNF4-221ENST00000513643 SYT6Q5T7P8 510 aaPredicted RBP7.79□□□□□ -1.16
RNF4-221ENST00000513643 DHRS7BQ6IAN0 325 aaPredicted RBP7.79□□□□□ -1.16
RNF4-221ENST00000513643 ZNF880Q6PDB4 577 aa7.79□□□□□ -1.16
RNF4-221ENST00000513643 ZNF773Q6PK81 442 aa7.79□□□□□ -1.16
RNF4-221ENST00000513643 OR2W3Q7Z3T1 314 aa7.79□□□□□ -1.16
RNF4-221ENST00000513643 NR2C2APQ86WQ0 139 aa7.79□□□□□ -1.16
RNF4-221ENST00000513643 THNSL2Q86YJ6 484 aa7.79□□□□□ -1.16
RNF4-221ENST00000513643 SVOPQ8N4V2 548 aa7.79□□□□□ -1.16
RNF4-221ENST00000513643 ZNF439Q8NDP4 499 aa7.79□□□□□ -1.16
RNF4-221ENST00000513643 MRPL30Q8TCC3 161 aaKnown RBP7.79□□□□□ -1.16
RNF4-221ENST00000513643 ST6GALNAC6Q969X2 333 aa7.79□□□□□ -1.16
RNF4-221ENST00000513643 LPAR5Q9H1C0 372 aa7.79□□□□□ -1.16
RNF4-221ENST00000513643 RAB18Q9NP72 206 aa7.79□□□□□ -1.16
RNF4-221ENST00000513643 GFOD1Q9NXC2 390 aa7.79□□□□□ -1.16
RNF4-221ENST00000513643 AK6Q9Y3D8 172 aaKnown RBP7.79□□□□□ -1.16
RNF4-221ENST00000513643 RNF114Q9Y508 228 aa7.79□□□□□ -1.16
RNF4-221ENST00000513643 HILPDAQ9Y5L2 63 aa7.79□□□□□ -1.16
RNF4-221ENST00000513643 TRBV6-6A0A0A6YYG2 114 aa7.78□□□□□ -1.16
RNF4-221ENST00000513643 AIPO00170 330 aa7.78□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms