RNA–Protein interactions for RNA: ENST00000509454.5

LIMCH1-210, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,506 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-210ENST00000509454 RAB6AP20340 208 aa9.32□□□□□ -0.92
LIMCH1-210ENST00000509454 SAA4P35542 130 aa9.32□□□□□ -0.92
LIMCH1-210ENST00000509454 C17orf58Q2M2W7 97 aa9.32□□□□□ -0.92
LIMCH1-210ENST00000509454 C6orf183Q5T699 404 aa9.32□□□□□ -0.92
LIMCH1-210ENST00000509454 HCP5Q6MZN7 132 aa9.32□□□□□ -0.92
LIMCH1-210ENST00000509454 BAIAP2L2Q6UXY1 529 aa9.32□□□□□ -0.92
LIMCH1-210ENST00000509454 HEPN1Q6WQI6 88 aa9.32□□□□□ -0.92
LIMCH1-210ENST00000509454 Q6ZTK2 550 aa9.32□□□□□ -0.92
LIMCH1-210ENST00000509454 C9orf139Q6ZV77 190 aa9.32□□□□□ -0.92
LIMCH1-210ENST00000509454 NDNFQ8TB73 568 aa9.32□□□□□ -0.92
LIMCH1-210ENST00000509454 PHF21AQ96BD5 680 aa9.32□□□□□ -0.92
LIMCH1-210ENST00000509454 ARHGAP5-AS1Q96IT6 56 aa9.32□□□□□ -0.92
LIMCH1-210ENST00000509454 CYYR1Q96J86 154 aa9.32□□□□□ -0.92
LIMCH1-210ENST00000509454 CLEC7AQ9BXN2 247 aa9.32□□□□□ -0.92
LIMCH1-210ENST00000509454 NAA50Q9GZZ1 169 aaKnown RBP9.32□□□□□ -0.92
LIMCH1-210ENST00000509454 NCOR1P1Q9H4R4 102 aa9.32□□□□□ -0.92
LIMCH1-210ENST00000509454 IDI2-AS1Q9NZ38 188 aa9.32□□□□□ -0.92
LIMCH1-210ENST00000509454 NF1P21359 2839 aa9.32□□□□□ -0.92
LIMCH1-210ENST00000509454 IGHV2-26A0A0B4J1V2 119 aa9.31□□□□□ -0.92
LIMCH1-210ENST00000509454 TOR1AO14656 332 aa9.31□□□□□ -0.92
LIMCH1-210ENST00000509454 LDLRAD4O15165 306 aa9.31□□□□□ -0.92
LIMCH1-210ENST00000509454 SPINT2O43291 252 aa9.31□□□□□ -0.92
LIMCH1-210ENST00000509454 CA11O75493 328 aa9.31□□□□□ -0.92
LIMCH1-210ENST00000509454 IL1AP01583 271 aa9.31□□□□□ -0.92
LIMCH1-210ENST00000509454 IGHV3-7P01780 117 aa9.31□□□□□ -0.92
LIMCH1-210ENST00000509454 FBP1P09467 338 aa9.31□□□□□ -0.92
LIMCH1-210ENST00000509454 GZMHP20718 246 aa9.31□□□□□ -0.92
LIMCH1-210ENST00000509454 CFPP27918 469 aa9.31□□□□□ -0.92
LIMCH1-210ENST00000509454 RPS19P39019 145 aaKnown RBP9.31□□□□□ -0.92
LIMCH1-210ENST00000509454 GDNFP39905 211 aa9.31□□□□□ -0.92
LIMCH1-210ENST00000509454 ALDH3B2P48448 385 aa9.31□□□□□ -0.92
LIMCH1-210ENST00000509454 PAX5Q02548 391 aa9.31□□□□□ -0.92
LIMCH1-210ENST00000509454 MIDNQ504T8 468 aa9.31□□□□□ -0.92
LIMCH1-210ENST00000509454 RTN4RL2Q86UN3 420 aa9.31□□□□□ -0.92
LIMCH1-210ENST00000509454 ANKRD13BQ86YJ7 626 aa9.31□□□□□ -0.92
LIMCH1-210ENST00000509454 CLVS1Q8IUQ0 354 aaPredicted RBP9.31□□□□□ -0.92
LIMCH1-210ENST00000509454 CROCCP3Q8IVE0 287 aa9.31□□□□□ -0.92
LIMCH1-210ENST00000509454 ABHD12Q8N2K0 398 aa9.31□□□□□ -0.92
LIMCH1-210ENST00000509454 RAB3CQ96E17 227 aa9.31□□□□□ -0.92
LIMCH1-210ENST00000509454 ZNF48Q96MX3 618 aaPredicted RBP9.31□□□□□ -0.92
LIMCH1-210ENST00000509454 PECRQ9BY49 303 aa9.31□□□□□ -0.92
LIMCH1-210ENST00000509454 RAB9BQ9NP90 201 aa9.31□□□□□ -0.92
LIMCH1-210ENST00000509454 AK3Q9UIJ7 227 aa9.31□□□□□ -0.92
LIMCH1-210ENST00000509454 A0A0A6YYJ9 748 aa9.31□□□□□ -0.92
LIMCH1-210ENST00000509454 IGHV3-43A0A0B4J1X8 118 aa9.31□□□□□ -0.92
LIMCH1-210ENST00000509454 TRIM77I1YAP6 450 aa9.31□□□□□ -0.92
LIMCH1-210ENST00000509454 SDCBPO00560 298 aaPredicted RBP9.31□□□□□ -0.92
LIMCH1-210ENST00000509454 VENTXO95231 258 aa9.31□□□□□ -0.92
LIMCH1-210ENST00000509454 TFAP2AP05549 437 aa9.31□□□□□ -0.92
LIMCH1-210ENST00000509454 CD3GP09693 182 aa9.31□□□□□ -0.92
LIMCH1-210ENST00000509454 IGHV3-43DP0DP04 118 aa9.31□□□□□ -0.92
LIMCH1-210ENST00000509454 RPL5P46777 297 aaKnown RBP9.31□□□□□ -0.92
LIMCH1-210ENST00000509454 GNG10P50151 68 aa9.31□□□□□ -0.92
LIMCH1-210ENST00000509454 HILS1P60008 231 aa9.31□□□□□ -0.92
LIMCH1-210ENST00000509454 MOGAT2Q3SYC2 334 aa9.31□□□□□ -0.92
LIMCH1-210ENST00000509454 PLA1AQ53H76 456 aa9.31□□□□□ -0.92
LIMCH1-210ENST00000509454 TRAT1Q6PIZ9 186 aa9.31□□□□□ -0.92
LIMCH1-210ENST00000509454 USP43Q70EL4 1123 aa9.31□□□□□ -0.92
LIMCH1-210ENST00000509454 FAM89BQ8N5H3 189 aa9.31□□□□□ -0.92
LIMCH1-210ENST00000509454 OR10R2Q8NGX6 335 aa9.31□□□□□ -0.92
LIMCH1-210ENST00000509454 MRPL30Q8TCC3 161 aaKnown RBP9.31□□□□□ -0.92
LIMCH1-210ENST00000509454 LEAP2Q969E1 77 aa9.31□□□□□ -0.92
LIMCH1-210ENST00000509454 CMSS1Q9BQ75 279 aaKnown RBP9.31□□□□□ -0.92
LIMCH1-210ENST00000509454 BTBD17A6NE02 478 aa9.3□□□□□ -0.92
LIMCH1-210ENST00000509454 DNAJC9-AS1A6NH13 148 aa9.3□□□□□ -0.92
LIMCH1-210ENST00000509454 C12orf77C9JDV5 145 aa9.3□□□□□ -0.92
LIMCH1-210ENST00000509454 HOXA3O43365 443 aaPredicted RBP9.3□□□□□ -0.92
LIMCH1-210ENST00000509454 GNB3P16520 340 aa9.3□□□□□ -0.92
LIMCH1-210ENST00000509454 RCC1P18754 421 aaPredicted RBP9.3□□□□□ -0.92
LIMCH1-210ENST00000509454 PRRX1P54821 245 aa9.3□□□□□ -0.92
LIMCH1-210ENST00000509454 ARFRP1Q13795 201 aa9.3□□□□□ -0.92
LIMCH1-210ENST00000509454 SLC16A12Q6ZSM3 486 aa9.3□□□□□ -0.92
LIMCH1-210ENST00000509454 LHFPL4Q7Z7J7 247 aa9.3□□□□□ -0.92
LIMCH1-210ENST00000509454 OR5H6Q8NGV6 325 aa9.3□□□□□ -0.92
LIMCH1-210ENST00000509454 OR1L1Q8NH94 360 aa9.3□□□□□ -0.92
LIMCH1-210ENST00000509454 C17orf50Q8WW18 174 aa9.3□□□□□ -0.92
LIMCH1-210ENST00000509454 PTX4Q96A99 478 aa9.3□□□□□ -0.92
LIMCH1-210ENST00000509454 KIRREL1Q96J84 757 aa9.3□□□□□ -0.92
LIMCH1-210ENST00000509454 HDHD3Q9BSH5 251 aaPredicted RBP9.3□□□□□ -0.92
LIMCH1-210ENST00000509454 ZMAT3Q9HA38 289 aaKnown RBP9.3□□□□□ -0.92
LIMCH1-210ENST00000509454 ZNF286AQ9HBT8 521 aa9.3□□□□□ -0.92
LIMCH1-210ENST00000509454 RHBDL2Q9NX52 303 aa9.3□□□□□ -0.92
LIMCH1-210ENST00000509454 ABRACLQ9P1F3 81 aa9.3□□□□□ -0.92
LIMCH1-210ENST00000509454 GNG12Q9UBI6 72 aa9.3□□□□□ -0.92
LIMCH1-210ENST00000509454 HSF4Q9ULV5 492 aa9.3□□□□□ -0.92
LIMCH1-210ENST00000509454 ETV7Q9Y603 341 aa9.3□□□□□ -0.92
LIMCH1-210ENST00000509454 ZFHX3Q15911 3703 aa9.29□□□□□ -0.92
LIMCH1-210ENST00000509454 CCDC160A6NGH7 325 aa9.29□□□□□ -0.92
LIMCH1-210ENST00000509454 RNF212BA8MTL3 300 aa9.29□□□□□ -0.92
LIMCH1-210ENST00000509454 ORC5O43913 435 aa9.29□□□□□ -0.92
LIMCH1-210ENST00000509454 GABARAPO95166 117 aa9.29□□□□□ -0.92
LIMCH1-210ENST00000509454 HBZP02008 142 aa9.29□□□□□ -0.92
LIMCH1-210ENST00000509454 MELTFP08582 738 aa9.29□□□□□ -0.92
LIMCH1-210ENST00000509454 PAX6P26367 422 aa9.29□□□□□ -0.92
LIMCH1-210ENST00000509454 TALDO1P37837 337 aa9.29□□□□□ -0.92
LIMCH1-210ENST00000509454 TMEM50BP56557 158 aa9.29□□□□□ -0.92
LIMCH1-210ENST00000509454 PLAC9Q5JTB6 97 aa9.29□□□□□ -0.92
LIMCH1-210ENST00000509454 OLFML2AQ68BL7 652 aa9.29□□□□□ -0.92
LIMCH1-210ENST00000509454 ZNF626Q68DY1 528 aa9.29□□□□□ -0.92
LIMCH1-210ENST00000509454 Q6YL49 198 aa9.29□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 95.7 ms