RNA–Protein interactions for RNA: ENST00000508604.5

NUP54-208, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-208ENST00000508604 ADGRL1O94910 1474 aa1.34□□□□□ -2.2
NUP54-208ENST00000508604 TANC1Q9C0D5 1861 aa1.34□□□□□ -2.2
NUP54-208ENST00000508604 ROBO3Q96MS0 1386 aa1.33□□□□□ -2.2
NUP54-208ENST00000508604 ARHGEF28Q8N1W1 1705 aaKnown RBP1.33□□□□□ -2.2
NUP54-208ENST00000508604 IGSF9BQ9UPX0 1349 aa1.33□□□□□ -2.2
NUP54-208ENST00000508604 ADGBQ8N7X0 1667 aa1.33□□□□□ -2.2
NUP54-208ENST00000508604 IGLV2-33A0A075B6J2 118 aaPredicted RBP1.33□□□□□ -2.2
NUP54-208ENST00000508604 PSMB11A5LHX3 300 aa1.33□□□□□ -2.2
NUP54-208ENST00000508604 OR5H1A6NKK0 313 aa1.33□□□□□ -2.2
NUP54-208ENST00000508604 IFITM5A6NNB3 132 aa1.33□□□□□ -2.2
NUP54-208ENST00000508604 HIDE1A8MVS5 230 aa1.33□□□□□ -2.2
NUP54-208ENST00000508604 EFCAB9A8MZ26 197 aa1.33□□□□□ -2.2
NUP54-208ENST00000508604 C11orf98E9PRG8 122 aa1.33□□□□□ -2.2
NUP54-208ENST00000508604 G3V4G9 280 aa1.33□□□□□ -2.2
NUP54-208ENST00000508604 PPP1R2P9O14990 202 aa1.33□□□□□ -2.2
NUP54-208ENST00000508604 ARPC1BO15143 372 aaKnown RBP1.33□□□□□ -2.2
NUP54-208ENST00000508604 FABP7O15540 132 aa1.33□□□□□ -2.2
NUP54-208ENST00000508604 TIMM8AO60220 97 aaPredicted RBP1.33□□□□□ -2.2
NUP54-208ENST00000508604 OR7C2O60412 319 aa1.33□□□□□ -2.2
NUP54-208ENST00000508604 SCELO95171 688 aa1.33□□□□□ -2.2
NUP54-208ENST00000508604 CNIH1O95406 144 aa1.33□□□□□ -2.2
NUP54-208ENST00000508604 MPC2O95563 127 aa1.33□□□□□ -2.2
NUP54-208ENST00000508604 CLIC3O95833 236 aa1.33□□□□□ -2.2
NUP54-208ENST00000508604 CST1P01037 141 aa1.33□□□□□ -2.2
NUP54-208ENST00000508604 IFNA1P01562 189 aa1.33□□□□□ -2.2
NUP54-208ENST00000508604 HLA-DQB1P01920 261 aa1.33□□□□□ -2.2
NUP54-208ENST00000508604 FABP3P05413 133 aa1.33□□□□□ -2.2
NUP54-208ENST00000508604 SERPINA7P05543 415 aa1.33□□□□□ -2.2
NUP54-208ENST00000508604 BCHEP06276 602 aa1.33□□□□□ -2.2
NUP54-208ENST00000508604 ADRA2AP08913 450 aa1.33□□□□□ -2.2
NUP54-208ENST00000508604 GKN3PP0CG01 181 aa1.33□□□□□ -2.2
NUP54-208ENST00000508604 PPIAL4GP0DN37 164 aa1.33□□□□□ -2.2
NUP54-208ENST00000508604 OR13C7P0DN81 318 aa1.33□□□□□ -2.2
NUP54-208ENST00000508604 TDGF1P13385 188 aa1.33□□□□□ -2.2
NUP54-208ENST00000508604 ZNF35P13682 527 aa1.33□□□□□ -2.2
NUP54-208ENST00000508604 USF1P22415 310 aaPredicted RBP1.33□□□□□ -2.2
NUP54-208ENST00000508604 HIST1H1TP22492 207 aaPredicted RBP1.33□□□□□ -2.2
NUP54-208ENST00000508604 S100A7P31151 101 aa1.33□□□□□ -2.2
NUP54-208ENST00000508604 PRDX2P32119 198 aa1.33□□□□□ -2.2
NUP54-208ENST00000508604 GLP1RP43220 463 aa1.33□□□□□ -2.2
NUP54-208ENST00000508604 UQCRFS1P47985 274 aa1.33□□□□□ -2.2
NUP54-208ENST00000508604 DUSP3P51452 185 aaPredicted RBP1.33□□□□□ -2.2
NUP54-208ENST00000508604 HCCSP53701 268 aa1.33□□□□□ -2.2
NUP54-208ENST00000508604 NAPAP54920 295 aa1.33□□□□□ -2.2
NUP54-208ENST00000508604 AQP5P55064 265 aa1.33□□□□□ -2.2
NUP54-208ENST00000508604 CTBP2P56545 445 aa1.33□□□□□ -2.2
NUP54-208ENST00000508604 TCTAP57738 103 aa1.33□□□□□ -2.2
NUP54-208ENST00000508604 SNRPD2P62316 118 aaKnown RBP1.33□□□□□ -2.2
NUP54-208ENST00000508604 SELENOWP63302 87 aa1.33□□□□□ -2.2
NUP54-208ENST00000508604 RUNX1Q01196 453 aa1.33□□□□□ -2.2
NUP54-208ENST00000508604 CAV1Q03135 178 aa1.33□□□□□ -2.2
NUP54-208ENST00000508604 ACVR1Q04771 509 aa1.33□□□□□ -2.2
NUP54-208ENST00000508604 MXD1Q05195 221 aa1.33□□□□□ -2.2
NUP54-208ENST00000508604 KLRC3Q07444 240 aa1.33□□□□□ -2.2
NUP54-208ENST00000508604 MLLT11Q13015 90 aaPredicted RBP1.33□□□□□ -2.2
NUP54-208ENST00000508604 ZNF154Q13106 437 aa1.33□□□□□ -2.2
NUP54-208ENST00000508604 TPBGQ13641 420 aa1.33□□□□□ -2.2
NUP54-208ENST00000508604 MOBPQ13875 183 aa1.33□□□□□ -2.2
NUP54-208ENST00000508604 GK3PQ14409 553 aa1.33□□□□□ -2.2
NUP54-208ENST00000508604 EBPQ15125 230 aaKnown RBP1.33□□□□□ -2.2
NUP54-208ENST00000508604 RAB35Q15286 201 aa1.33□□□□□ -2.2
NUP54-208ENST00000508604 RHEBQ15382 184 aa1.33□□□□□ -2.2
NUP54-208ENST00000508604 NEDD8Q15843 81 aa1.33□□□□□ -2.2
NUP54-208ENST00000508604 TNXAQ16473 311 aa1.33□□□□□ -2.2
NUP54-208ENST00000508604 PRSS8Q16651 343 aa1.33□□□□□ -2.2
NUP54-208ENST00000508604 LGALSLQ3ZCW2 172 aaPredicted RBP1.33□□□□□ -2.2
NUP54-208ENST00000508604 ACSF3Q4G176 576 aaPredicted RBP1.33□□□□□ -2.2
NUP54-208ENST00000508604 TMEM128Q5BJH2 165 aa1.33□□□□□ -2.2
NUP54-208ENST00000508604 CARD16Q5EG05 197 aa1.33□□□□□ -2.2
NUP54-208ENST00000508604 C6orf226Q5I0X4 101 aa1.33□□□□□ -2.2
NUP54-208ENST00000508604 C1orf194Q5T5A4 169 aa1.33□□□□□ -2.2
NUP54-208ENST00000508604 TMEM244Q5VVB8 128 aa1.33□□□□□ -2.2
NUP54-208ENST00000508604 TMEM225Q6GV28 225 aa1.33□□□□□ -2.2
NUP54-208ENST00000508604 OR52W1Q6IF63 320 aa1.33□□□□□ -2.2
NUP54-208ENST00000508604 FAM71F2Q6NXP2 309 aa1.33□□□□□ -2.2
NUP54-208ENST00000508604 FAHD1Q6P587 224 aa1.33□□□□□ -2.2
NUP54-208ENST00000508604 TOMM20LQ6UXN7 152 aa1.33□□□□□ -2.2
NUP54-208ENST00000508604 DOLPP1Q86YN1 238 aa1.33□□□□□ -2.2
NUP54-208ENST00000508604 SNX29P2Q8IUI4 249 aa1.33□□□□□ -2.2
NUP54-208ENST00000508604 SLC30A8Q8IWU4 369 aa1.33□□□□□ -2.2
NUP54-208ENST00000508604 ZNF664Q8N3J9 261 aa1.33□□□□□ -2.2
NUP54-208ENST00000508604 CDRT4Q8N9R6 151 aa1.33□□□□□ -2.2
NUP54-208ENST00000508604 CHST4Q8NCG5 386 aa1.33□□□□□ -2.2
NUP54-208ENST00000508604 LFNGQ8NES3 379 aa1.33□□□□□ -2.2
NUP54-208ENST00000508604 SLC26A10Q8NG04 563 aa1.33□□□□□ -2.2
NUP54-208ENST00000508604 OR7G2Q8NG99 324 aa1.33□□□□□ -2.2
NUP54-208ENST00000508604 OR4D11Q8NGI4 311 aa1.33□□□□□ -2.2
NUP54-208ENST00000508604 OR5A2Q8NGI9 324 aa1.33□□□□□ -2.2
NUP54-208ENST00000508604 OR9I1Q8NGQ6 314 aa1.33□□□□□ -2.2
NUP54-208ENST00000508604 OR52E5Q8NH55 327 aa1.33□□□□□ -2.2
NUP54-208ENST00000508604 GNPDA2Q8TDQ7 276 aa1.33□□□□□ -2.2
NUP54-208ENST00000508604 GPR119Q8TDV5 335 aa1.33□□□□□ -2.2
NUP54-208ENST00000508604 CANT1Q8WVQ1 401 aa1.33□□□□□ -2.2
NUP54-208ENST00000508604 LHX4Q969G2 390 aa1.33□□□□□ -2.2
NUP54-208ENST00000508604 NEIL2Q969S2 332 aa1.33□□□□□ -2.2
NUP54-208ENST00000508604 HIST1H2BAQ96A08 127 aa1.33□□□□□ -2.2
NUP54-208ENST00000508604 YIPF6Q96EC8 236 aa1.33□□□□□ -2.2
NUP54-208ENST00000508604 CCDC126Q96EE4 140 aa1.33□□□□□ -2.2
NUP54-208ENST00000508604 PIK3IP1Q96FE7 263 aa1.33□□□□□ -2.2
NUP54-208ENST00000508604 RDH12Q96NR8 316 aa1.33□□□□□ -2.2
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms