RNA–Protein interactions for RNA: ENST00000507778.1

HMGB1P28-201, Transcript of high mobility group box 1 pseudogene 28, humanhuman

BASIC

Gene HMGB1P28, Length 552 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P28-201ENST00000507778 APOFQ13790 326 aa1.86□□□□□ -2.11
HMGB1P28-201ENST00000507778 PAFAH1B3Q15102 231 aaKnown RBP1.86□□□□□ -2.11
HMGB1P28-201ENST00000507778 CST6Q15828 149 aa1.86□□□□□ -2.11
HMGB1P28-201ENST00000507778 RBM48Q5RL73 367 aaKnown RBP1.86□□□□□ -2.11
HMGB1P28-201ENST00000507778 C10orf91Q5T1B1 145 aa1.86□□□□□ -2.11
HMGB1P28-201ENST00000507778 TCF24Q7RTU0 167 aa1.86□□□□□ -2.11
HMGB1P28-201ENST00000507778 TCF23Q7RTU1 214 aa1.86□□□□□ -2.11
HMGB1P28-201ENST00000507778 OR11G2Q8NGC1 345 aa1.86□□□□□ -2.11
HMGB1P28-201ENST00000507778 HIST1H2BAQ96A08 127 aa1.86□□□□□ -2.11
HMGB1P28-201ENST00000507778 RAD51AP1Q96B01 352 aa1.86□□□□□ -2.11
HMGB1P28-201ENST00000507778 ACBD6Q9BR61 282 aa1.86□□□□□ -2.11
HMGB1P28-201ENST00000507778 ALX4Q9H161 411 aaPredicted RBP1.86□□□□□ -2.11
HMGB1P28-201ENST00000507778 DMAC2Q9NW81 257 aa1.86□□□□□ -2.11
HMGB1P28-201ENST00000507778 SLC23A2Q9UGH3 650 aa1.86□□□□□ -2.11
HMGB1P28-201ENST00000507778 RPUSD1Q9UJJ7 312 aaKnown RBP1.86□□□□□ -2.11
HMGB1P28-201ENST00000507778 MAP3K19Q56UN5 1328 aa1.86□□□□□ -2.11
HMGB1P28-201ENST00000507778 MYO15BQ96JP2 1530 aa1.86□□□□□ -2.11
HMGB1P28-201ENST00000507778 IGHV3OR15-7A0A075B7D8 119 aa1.85□□□□□ -2.11
HMGB1P28-201ENST00000507778 A0A1W2PNM2 257 aa1.85□□□□□ -2.11
HMGB1P28-201ENST00000507778 IQCF5A8MTL0 148 aa1.85□□□□□ -2.11
HMGB1P28-201ENST00000507778 PHYHO14832 338 aa1.85□□□□□ -2.11
HMGB1P28-201ENST00000507778 LECT2O14960 151 aa1.85□□□□□ -2.11
HMGB1P28-201ENST00000507778 CYTH3O43739 400 aa1.85□□□□□ -2.11
HMGB1P28-201ENST00000507778 NEMFO60524 1076 aa1.85□□□□□ -2.11
HMGB1P28-201ENST00000507778 UGT2B11O75310 529 aa1.85□□□□□ -2.11
HMGB1P28-201ENST00000507778 NPPAP01160 153 aa1.85□□□□□ -2.11
HMGB1P28-201ENST00000507778 CTSGP08311 255 aa1.85□□□□□ -2.11
HMGB1P28-201ENST00000507778 DYNLL1P63167 89 aaKnown RBP1.85□□□□□ -2.11
HMGB1P28-201ENST00000507778 SKP2Q13309 424 aa1.85□□□□□ -2.11
HMGB1P28-201ENST00000507778 SELENOHQ8IZQ5 122 aaKnown RBP1.85□□□□□ -2.11
HMGB1P28-201ENST00000507778 CCDC12Q8WUD4 166 aaPredicted RBP1.85□□□□□ -2.11
HMGB1P28-201ENST00000507778 OR8B2Q96RD0 313 aa1.85□□□□□ -2.11
HMGB1P28-201ENST00000507778 MED10Q9BTT4 135 aa1.85□□□□□ -2.11
HMGB1P28-201ENST00000507778 POTEKPQ9BYX7 375 aa1.85□□□□□ -2.11
HMGB1P28-201ENST00000507778 LINC00588Q9Y4M8 146 aa1.85□□□□□ -2.11
HMGB1P28-201ENST00000507778 URGCP-MRPS24S4R325 110 aa1.85□□□□□ -2.11
HMGB1P28-201ENST00000507778 PLXNB3Q9ULL4 1909 aa1.84□□□□□ -2.11
HMGB1P28-201ENST00000507778 SDHAF1A6NFY7 115 aa1.84□□□□□ -2.11
HMGB1P28-201ENST00000507778 ERICH4A6NGS2 130 aa1.84□□□□□ -2.11
HMGB1P28-201ENST00000507778 J3QRE1 110 aa1.84□□□□□ -2.11
HMGB1P28-201ENST00000507778 M0QX08 132 aa1.84□□□□□ -2.11
HMGB1P28-201ENST00000507778 LTAP01374 205 aa1.84□□□□□ -2.11
HMGB1P28-201ENST00000507778 OR12D1P0DN82 309 aa1.84□□□□□ -2.11
HMGB1P28-201ENST00000507778 ZNF22P17026 224 aaPredicted RBP1.84□□□□□ -2.11
HMGB1P28-201ENST00000507778 NIPAL1Q6NVV3 410 aa1.84□□□□□ -2.11
HMGB1P28-201ENST00000507778 KRTAP13-1Q8IUC0 172 aa1.84□□□□□ -2.11
HMGB1P28-201ENST00000507778 OR5D18Q8NGL1 313 aa1.84□□□□□ -2.11
HMGB1P28-201ENST00000507778 OR4P4Q8NGL7 312 aa1.84□□□□□ -2.11
HMGB1P28-201ENST00000507778 OR9I1Q8NGQ6 314 aa1.84□□□□□ -2.11
HMGB1P28-201ENST00000507778 DYNC2LI1Q8TCX1 351 aa1.84□□□□□ -2.11
HMGB1P28-201ENST00000507778 RNASEH2CQ8TDP1 164 aaKnown RBP1.84□□□□□ -2.11
HMGB1P28-201ENST00000507778 ZCCHC13Q8WW36 166 aaKnown RBP1.84□□□□□ -2.11
HMGB1P28-201ENST00000507778 TMEM56Q96MV1 263 aa1.84□□□□□ -2.11
HMGB1P28-201ENST00000507778 UGT2B28Q9BY64 529 aa1.84□□□□□ -2.11
HMGB1P28-201ENST00000507778 ASCL3Q9NQ33 180 aa1.84□□□□□ -2.11
HMGB1P28-201ENST00000507778 MRPL16Q9NX20 251 aaKnown RBP1.84□□□□□ -2.11
HMGB1P28-201ENST00000507778 FBXL3Q9UKT7 428 aa1.84□□□□□ -2.11
HMGB1P28-201ENST00000507778 LRPPRCP42704 1394 aaKnown RBP1.84□□□□□ -2.12
HMGB1P28-201ENST00000507778 TMEM131Q92545 1883 aa1.84□□□□□ -2.12
HMGB1P28-201ENST00000507778 KLRC4-KLRK1H3BQV0 150 aa1.83□□□□□ -2.12
HMGB1P28-201ENST00000507778 SLC25A20O43772 301 aa1.83□□□□□ -2.12
HMGB1P28-201ENST00000507778 RAB36O95755 333 aa1.83□□□□□ -2.12
HMGB1P28-201ENST00000507778 CRABP1P29762 137 aa1.83□□□□□ -2.12
HMGB1P28-201ENST00000507778 KDELR2P33947 212 aa1.83□□□□□ -2.12
HMGB1P28-201ENST00000507778 RAB8AP61006 207 aa1.83□□□□□ -2.12
HMGB1P28-201ENST00000507778 NOXRED1Q6NXP6 359 aa1.83□□□□□ -2.12
HMGB1P28-201ENST00000507778 TTC33Q6PID6 262 aaPredicted RBP1.83□□□□□ -2.12
HMGB1P28-201ENST00000507778 MTERF4Q7Z6M4 381 aaKnown RBP1.83□□□□□ -2.12
HMGB1P28-201ENST00000507778 MSRB3Q8IXL7 192 aa1.83□□□□□ -2.12
HMGB1P28-201ENST00000507778 ATP6V1C2Q8NEY4 427 aa1.83□□□□□ -2.12
HMGB1P28-201ENST00000507778 OR8K1Q8NGG5 319 aa1.83□□□□□ -2.12
HMGB1P28-201ENST00000507778 OR11L1Q8NGX0 322 aa1.83□□□□□ -2.12
HMGB1P28-201ENST00000507778 OR5AK3PQ8NH89 298 aa1.83□□□□□ -2.12
HMGB1P28-201ENST00000507778 LMX1AQ8TE12 382 aa1.83□□□□□ -2.12
HMGB1P28-201ENST00000507778 GALMQ96C23 342 aa1.83□□□□□ -2.12
HMGB1P28-201ENST00000507778 LRRC45Q96CN5 670 aa1.83□□□□□ -2.12
HMGB1P28-201ENST00000507778 FAM210AQ96ND0 272 aa1.83□□□□□ -2.12
HMGB1P28-201ENST00000507778 CHMP4BQ9H444 224 aaKnown RBP1.83□□□□□ -2.12
HMGB1P28-201ENST00000507778 METTL17Q9H7H0 456 aaPredicted RBP1.83□□□□□ -2.12
HMGB1P28-201ENST00000507778 MS4A12Q9NXJ0 267 aa1.83□□□□□ -2.12
HMGB1P28-201ENST00000507778 TRIOBPQ9H2D6 2365 aa1.83□□□□□ -2.12
HMGB1P28-201ENST00000507778 SHROOM3Q8TF72 1996 aa1.82□□□□□ -2.12
HMGB1P28-201ENST00000507778 B4DEV8 164 aa1.82□□□□□ -2.12
HMGB1P28-201ENST00000507778 C9J4A7 227 aa1.82□□□□□ -2.12
HMGB1P28-201ENST00000507778 ZNF878C9JN71 531 aa1.82□□□□□ -2.12
HMGB1P28-201ENST00000507778 G3V3Q6 166 aa1.82□□□□□ -2.12
HMGB1P28-201ENST00000507778 MKRN2OSH3BPM6 223 aa1.82□□□□□ -2.12
HMGB1P28-201ENST00000507778 LIN7AO14910 233 aaPredicted RBP1.82□□□□□ -2.12
HMGB1P28-201ENST00000507778 SYNGR1O43759 233 aa1.82□□□□□ -2.12
HMGB1P28-201ENST00000507778 MPZL2O60487 215 aa1.82□□□□□ -2.12
HMGB1P28-201ENST00000507778 CDK14O94921 469 aa1.82□□□□□ -2.12
HMGB1P28-201ENST00000507778 CTSEP14091 401 aa1.82□□□□□ -2.12
HMGB1P28-201ENST00000507778 PSMA1P25786 263 aaKnown RBP1.82□□□□□ -2.12
HMGB1P28-201ENST00000507778 GABRA3P34903 492 aa1.82□□□□□ -2.12
HMGB1P28-201ENST00000507778 GABARAPL2P60520 117 aa1.82□□□□□ -2.12
HMGB1P28-201ENST00000507778 FAM3AP98173 230 aa1.82□□□□□ -2.12
HMGB1P28-201ENST00000507778 TSPAN31Q12999 210 aa1.82□□□□□ -2.12
HMGB1P28-201ENST00000507778 SLAMF1Q13291 335 aa1.82□□□□□ -2.12
HMGB1P28-201ENST00000507778 HES3Q5TGS1 186 aa1.82□□□□□ -2.12
HMGB1P28-201ENST00000507778 SCXQ7RTU7 201 aa1.82□□□□□ -2.12
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms