RNA–Protein interactions for RNA: ENST00000476085.1

MSH5-SAPCD1-205, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 2

Gene MSH5-SAPCD1, Length 950 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-205ENST00000476085 ZFP57Q9NU63 452 aa9.66□□□□□ -0.86
MSH5-SAPCD1-205ENST00000476085 ST3GAL6Q9Y274 331 aa9.66□□□□□ -0.86
MSH5-SAPCD1-205ENST00000476085 TRAV39A0A0B4J263 110 aa9.65□□□□□ -0.86
MSH5-SAPCD1-205ENST00000476085 IGHV1-3A0A0C4DH29 117 aa9.65□□□□□ -0.86
MSH5-SAPCD1-205ENST00000476085 ERICH4A6NGS2 130 aa9.65□□□□□ -0.86
MSH5-SAPCD1-205ENST00000476085 GEMIN2O14893 280 aaKnown RBP9.65□□□□□ -0.86
MSH5-SAPCD1-205ENST00000476085 CASQ2O14958 399 aaPredicted RBP9.65□□□□□ -0.86
MSH5-SAPCD1-205ENST00000476085 HTR3BO95264 441 aa9.65□□□□□ -0.86
MSH5-SAPCD1-205ENST00000476085 IGKV1D-33P01593 117 aa9.65□□□□□ -0.86
MSH5-SAPCD1-205ENST00000476085 IGKV1-33P01594 117 aa9.65□□□□□ -0.86
MSH5-SAPCD1-205ENST00000476085 TMEM11P17152 192 aa9.65□□□□□ -0.86
MSH5-SAPCD1-205ENST00000476085 DCKP27707 260 aa9.65□□□□□ -0.86
MSH5-SAPCD1-205ENST00000476085 VHLP40337 213 aa9.65□□□□□ -0.86
MSH5-SAPCD1-205ENST00000476085 SOX2P48431 317 aa9.65□□□□□ -0.86
MSH5-SAPCD1-205ENST00000476085 RPS11P62280 158 aaKnown RBP eCLIP9.65□□□□□ -0.86
MSH5-SAPCD1-205ENST00000476085 SMN1Q16637 294 aaKnown RBP9.65□□□□□ -0.86
MSH5-SAPCD1-205ENST00000476085 LRRC36Q1X8D7 754 aa9.65□□□□□ -0.86
MSH5-SAPCD1-205ENST00000476085 Q3ZCU0 254 aa9.65□□□□□ -0.86
MSH5-SAPCD1-205ENST00000476085 VAX1Q5SQQ9 334 aa9.65□□□□□ -0.86
MSH5-SAPCD1-205ENST00000476085 LINC00596Q86U02 117 aa9.65□□□□□ -0.86
MSH5-SAPCD1-205ENST00000476085 SATL1Q86VE3 508 aa9.65□□□□□ -0.86
MSH5-SAPCD1-205ENST00000476085 IZUMO1Q8IYV9 350 aa9.65□□□□□ -0.86
MSH5-SAPCD1-205ENST00000476085 GAPTQ8N292 157 aa9.65□□□□□ -0.86
MSH5-SAPCD1-205ENST00000476085 COMMD1Q8N668 190 aa9.65□□□□□ -0.86
MSH5-SAPCD1-205ENST00000476085 RNF152Q8N8N0 203 aa9.65□□□□□ -0.86
MSH5-SAPCD1-205ENST00000476085 OR52N1Q8NH53 320 aa9.65□□□□□ -0.86
MSH5-SAPCD1-205ENST00000476085 EAF1Q96JC9 268 aaPredicted RBP9.65□□□□□ -0.86
MSH5-SAPCD1-205ENST00000476085 GPER1Q99527 375 aa9.65□□□□□ -0.86
MSH5-SAPCD1-205ENST00000476085 TMEM138Q9NPI0 162 aa9.65□□□□□ -0.86
MSH5-SAPCD1-205ENST00000476085 TRBV5-5A0A0J9YX44 114 aa9.64□□□□□ -0.87
MSH5-SAPCD1-205ENST00000476085 A0A1W2PPE3 182 aa9.64□□□□□ -0.87
MSH5-SAPCD1-205ENST00000476085 H0YHG0 523 aa9.64□□□□□ -0.87
MSH5-SAPCD1-205ENST00000476085 MAGEB3O15480 346 aa9.64□□□□□ -0.87
MSH5-SAPCD1-205ENST00000476085 ORC5O43913 435 aa9.64□□□□□ -0.87
MSH5-SAPCD1-205ENST00000476085 LALBAP00709 142 aa9.64□□□□□ -0.87
MSH5-SAPCD1-205ENST00000476085 MT-ND4P03905 459 aa9.64□□□□□ -0.87
MSH5-SAPCD1-205ENST00000476085 GAPDHP04406 335 aaKnown RBP9.64□□□□□ -0.87
MSH5-SAPCD1-205ENST00000476085 CD2P06729 351 aa9.64□□□□□ -0.87
MSH5-SAPCD1-205ENST00000476085 HOXD3P31249 432 aaPredicted RBP9.64□□□□□ -0.87
MSH5-SAPCD1-205ENST00000476085 ZNF93P35789 620 aaPredicted RBP9.64□□□□□ -0.87
MSH5-SAPCD1-205ENST00000476085 MYCNOSP40205 109 aa9.64□□□□□ -0.87
MSH5-SAPCD1-205ENST00000476085 ZNF137PP52743 207 aa9.64□□□□□ -0.87
MSH5-SAPCD1-205ENST00000476085 HNF4GQ14541 408 aa9.64□□□□□ -0.87
MSH5-SAPCD1-205ENST00000476085 MPV17LQ2QL34 196 aa9.64□□□□□ -0.87
MSH5-SAPCD1-205ENST00000476085 OGFRL1Q5TC84 451 aaPredicted RBP9.64□□□□□ -0.87
MSH5-SAPCD1-205ENST00000476085 OR2G6Q5TZ20 316 aa9.64□□□□□ -0.87
MSH5-SAPCD1-205ENST00000476085 FAM53AQ6NSI3 398 aaPredicted RBP9.64□□□□□ -0.87
MSH5-SAPCD1-205ENST00000476085 ZNF497Q6ZNH5 498 aa9.64□□□□□ -0.87
MSH5-SAPCD1-205ENST00000476085 LYPD6Q86Y78 171 aa9.64□□□□□ -0.87
MSH5-SAPCD1-205ENST00000476085 TGIF2LXQ8IUE1 241 aa9.64□□□□□ -0.87
MSH5-SAPCD1-205ENST00000476085 STPG2Q8N412 459 aa9.64□□□□□ -0.87
MSH5-SAPCD1-205ENST00000476085 DHRSXQ8N5I4 330 aa9.64□□□□□ -0.87
MSH5-SAPCD1-205ENST00000476085 Q8N9W7 124 aa9.64□□□□□ -0.87
MSH5-SAPCD1-205ENST00000476085 OR51D1Q8NGF3 324 aa9.64□□□□□ -0.87
MSH5-SAPCD1-205ENST00000476085 CYGBQ8WWM9 190 aa9.64□□□□□ -0.87
MSH5-SAPCD1-205ENST00000476085 ORAI1Q96D31 301 aa9.64□□□□□ -0.87
MSH5-SAPCD1-205ENST00000476085 METTL9Q9H1A3 318 aa9.64□□□□□ -0.87
MSH5-SAPCD1-205ENST00000476085 ABCG5Q9H222 651 aa9.64□□□□□ -0.87
MSH5-SAPCD1-205ENST00000476085 GFOD1Q9NXC2 390 aa9.64□□□□□ -0.87
MSH5-SAPCD1-205ENST00000476085 BABAM2Q9NXR7 383 aa9.64□□□□□ -0.87
MSH5-SAPCD1-205ENST00000476085 RCC2Q9P258 522 aaKnown RBP9.64□□□□□ -0.87
MSH5-SAPCD1-205ENST00000476085 A0A1W2PP11 408 aa9.63□□□□□ -0.87
MSH5-SAPCD1-205ENST00000476085 TMEM30CPA0ZSE6 113 aa9.63□□□□□ -0.87
MSH5-SAPCD1-205ENST00000476085 IRGMA1A4Y4 181 aa9.63□□□□□ -0.87
MSH5-SAPCD1-205ENST00000476085 CCRL2O00421 344 aa9.63□□□□□ -0.87
MSH5-SAPCD1-205ENST00000476085 HSD17B6O14756 317 aa9.63□□□□□ -0.87
MSH5-SAPCD1-205ENST00000476085 CLIC3O95833 236 aa9.63□□□□□ -0.87
MSH5-SAPCD1-205ENST00000476085 CD1BP29016 333 aa9.63□□□□□ -0.87
MSH5-SAPCD1-205ENST00000476085 BDKRB2P30411 391 aa9.63□□□□□ -0.87
MSH5-SAPCD1-205ENST00000476085 GNG10P50151 68 aa9.63□□□□□ -0.87
MSH5-SAPCD1-205ENST00000476085 ZNF134P52741 427 aa9.63□□□□□ -0.87
MSH5-SAPCD1-205ENST00000476085 CFHR3Q02985 330 aa9.63□□□□□ -0.87
MSH5-SAPCD1-205ENST00000476085 HES1Q14469 280 aa9.63□□□□□ -0.87
MSH5-SAPCD1-205ENST00000476085 LTC4SQ16873 150 aa9.63□□□□□ -0.87
MSH5-SAPCD1-205ENST00000476085 DMKNQ6E0U4 476 aaPredicted RBP9.63□□□□□ -0.87
MSH5-SAPCD1-205ENST00000476085 C8orf86Q6ZUL3 223 aa9.63□□□□□ -0.87
MSH5-SAPCD1-205ENST00000476085 SLC35E3Q7Z769 313 aa9.63□□□□□ -0.87
MSH5-SAPCD1-205ENST00000476085 ZNF439Q8NDP4 499 aa9.63□□□□□ -0.87
MSH5-SAPCD1-205ENST00000476085 OR10X1Q8NGY0 326 aa9.63□□□□□ -0.87
MSH5-SAPCD1-205ENST00000476085 ARL11Q969Q4 196 aa9.63□□□□□ -0.87
MSH5-SAPCD1-205ENST00000476085 SMIM19Q96E16 107 aa9.63□□□□□ -0.87
MSH5-SAPCD1-205ENST00000476085 GPR61Q9BZJ8 451 aa9.63□□□□□ -0.87
MSH5-SAPCD1-205ENST00000476085 VCX3BQ9H321 246 aa9.63□□□□□ -0.87
MSH5-SAPCD1-205ENST00000476085 LINC00527Q9UJ94 153 aa9.63□□□□□ -0.87
MSH5-SAPCD1-205ENST00000476085 ING4Q9UNL4 249 aa9.63□□□□□ -0.87
MSH5-SAPCD1-205ENST00000476085 SORL1Q92673 2214 aa9.63□□□□□ -0.87
MSH5-SAPCD1-205ENST00000476085 TRBV5-7A0A0A0MS05 114 aa9.62□□□□□ -0.87
MSH5-SAPCD1-205ENST00000476085 MAGEA13PA6NCF6 341 aa9.62□□□□□ -0.87
MSH5-SAPCD1-205ENST00000476085 SERPINE3A8MV23 424 aa9.62□□□□□ -0.87
MSH5-SAPCD1-205ENST00000476085 ZNF780AO75290 641 aaPredicted RBP9.62□□□□□ -0.87
MSH5-SAPCD1-205ENST00000476085 OR7C1O76099 320 aaPredicted RBP9.62□□□□□ -0.87
MSH5-SAPCD1-205ENST00000476085 GPR12P47775 334 aa9.62□□□□□ -0.87
MSH5-SAPCD1-205ENST00000476085 KHDC1LQ5JSQ8 128 aa9.62□□□□□ -0.87
MSH5-SAPCD1-205ENST00000476085 DDI2Q5TDH0 399 aa9.62□□□□□ -0.87
MSH5-SAPCD1-205ENST00000476085 C11orf87Q6NUJ2 197 aa9.62□□□□□ -0.87
MSH5-SAPCD1-205ENST00000476085 SLC25A48Q6ZT89 311 aaKnown RBP9.62□□□□□ -0.87
MSH5-SAPCD1-205ENST00000476085 FAM71E2Q8N5Q1 922 aa9.62□□□□□ -0.87
MSH5-SAPCD1-205ENST00000476085 OR13C5Q8NGS8 318 aa9.62□□□□□ -0.87
MSH5-SAPCD1-205ENST00000476085 RTN4IP1Q8WWV3 396 aaPredicted RBP9.62□□□□□ -0.87
MSH5-SAPCD1-205ENST00000476085 GHSRQ92847 366 aa9.62□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms