RNA–Protein interactions for RNA: ENST00000473258.1

COL6A3-210, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 5,433 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-210ENST00000473258 TBX6O95947 436 aaPredicted RBP7.92□□□□□ -1.14
COL6A3-210ENST00000473258 TRACP01848 142 aa7.92□□□□□ -1.14
COL6A3-210ENST00000473258 IGHV4-34P06331 123 aa7.92□□□□□ -1.14
COL6A3-210ENST00000473258 HERV-K104P63124 156 aa7.92□□□□□ -1.14
COL6A3-210ENST00000473258 NTHL1P78549 312 aa7.92□□□□□ -1.14
COL6A3-210ENST00000473258 DMKNQ6E0U4 476 aaPredicted RBP7.92□□□□□ -1.14
COL6A3-210ENST00000473258 TMEM252Q8N6L7 170 aa7.92□□□□□ -1.14
COL6A3-210ENST00000473258 NPEPL1Q8NDH3 523 aa7.92□□□□□ -1.14
COL6A3-210ENST00000473258 OR2I1PQ8NGU4 316 aa7.92□□□□□ -1.14
COL6A3-210ENST00000473258 PP6455Q8WZ26 134 aa7.92□□□□□ -1.14
COL6A3-210ENST00000473258 VSIG4Q9Y279 399 aa7.92□□□□□ -1.14
COL6A3-210ENST00000473258 TRAV9-1A0A075B6T8 112 aa7.91□□□□□ -1.14
COL6A3-210ENST00000473258 NKX2-8O15522 239 aa7.91□□□□□ -1.14
COL6A3-210ENST00000473258 HSPE1P61604 102 aaKnown RBP7.91□□□□□ -1.14
COL6A3-210ENST00000473258 LSM6P62312 80 aaKnown RBP7.91□□□□□ -1.14
COL6A3-210ENST00000473258 SFTA2Q6UW10 78 aa7.91□□□□□ -1.14
COL6A3-210ENST00000473258 LRP10Q7Z4F1 713 aa7.91□□□□□ -1.14
COL6A3-210ENST00000473258 Q8NFD4 153 aa7.91□□□□□ -1.14
COL6A3-210ENST00000473258 TAAR3PQ9P1P4 343 aa7.91□□□□□ -1.14
COL6A3-210ENST00000473258 ZNF785A8K8V0 405 aa7.91□□□□□ -1.14
COL6A3-210ENST00000473258 CYBAP13498 195 aa7.91□□□□□ -1.14
COL6A3-210ENST00000473258 UCP2P55851 309 aa7.91□□□□□ -1.14
COL6A3-210ENST00000473258 CLDN15P56746 228 aa7.91□□□□□ -1.14
COL6A3-210ENST00000473258 CXCL17Q6UXB2 119 aa7.91□□□□□ -1.14
COL6A3-210ENST00000473258 SLCO4C1Q6ZQN7 724 aa7.91□□□□□ -1.14
COL6A3-210ENST00000473258 OR9G4Q8NGQ1 327 aa7.91□□□□□ -1.14
COL6A3-210ENST00000473258 C4orf45Q96LM5 186 aa7.91□□□□□ -1.14
COL6A3-210ENST00000473258 ONECUT1Q9UBC0 465 aa7.91□□□□□ -1.14
COL6A3-210ENST00000473258 CLTCL1P53675 1640 aa7.91□□□□□ -1.14
COL6A3-210ENST00000473258 ADAMTS12P58397 1594 aa7.91□□□□□ -1.14
COL6A3-210ENST00000473258 ZNF840PA6NDX5 716 aa7.91□□□□□ -1.14
COL6A3-210ENST00000473258 LIM2P55344 173 aa7.91□□□□□ -1.14
COL6A3-210ENST00000473258 LIN28BQ6ZN17 250 aaKnown RBP eCLIP7.91□□□□□ -1.14
COL6A3-210ENST00000473258 SCD5Q86SK9 330 aa7.91□□□□□ -1.14
COL6A3-210ENST00000473258 MS4A6AQ9H2W1 248 aa7.91□□□□□ -1.14
COL6A3-210ENST00000473258 PLSCR2Q9NRY7 297 aa7.91□□□□□ -1.14
COL6A3-210ENST00000473258 TMEM160Q9NX00 188 aa7.91□□□□□ -1.14
COL6A3-210ENST00000473258 ERRFI1Q9UJM3 462 aaPredicted RBP7.91□□□□□ -1.14
COL6A3-210ENST00000473258 RAXQ9Y2V3 346 aa7.91□□□□□ -1.14
COL6A3-210ENST00000473258 NEUROG3Q9Y4Z2 214 aa7.91□□□□□ -1.14
COL6A3-210ENST00000473258 FAM181BA6NEQ2 426 aa7.91□□□□□ -1.14
COL6A3-210ENST00000473258 SH2D7A6NKC9 451 aaPredicted RBP7.91□□□□□ -1.14
COL6A3-210ENST00000473258 K7EP13 123 aa7.91□□□□□ -1.14
COL6A3-210ENST00000473258 FCN3O75636 299 aa7.91□□□□□ -1.14
COL6A3-210ENST00000473258 TSPO2Q5TGU0 170 aa7.91□□□□□ -1.14
COL6A3-210ENST00000473258 GRAMD2BQ96HH9 432 aa7.91□□□□□ -1.14
COL6A3-210ENST00000473258 IMMP2LQ96T52 175 aa7.91□□□□□ -1.14
COL6A3-210ENST00000473258 MOB4Q9Y3A3 225 aa7.91□□□□□ -1.14
COL6A3-210ENST00000473258 NKX2-6A6NCS4 301 aa7.9□□□□□ -1.14
COL6A3-210ENST00000473258 TMEM8BA6NDV4 472 aa7.9□□□□□ -1.14
COL6A3-210ENST00000473258 RAMP1O60894 148 aa7.9□□□□□ -1.14
COL6A3-210ENST00000473258 SRP19P09132 144 aaKnown RBP7.9□□□□□ -1.14
COL6A3-210ENST00000473258 PSG3Q16557 428 aa7.9□□□□□ -1.14
COL6A3-210ENST00000473258 TCF24Q7RTU0 167 aa7.9□□□□□ -1.14
COL6A3-210ENST00000473258 SSMEM1Q8WWF3 244 aa7.9□□□□□ -1.14
COL6A3-210ENST00000473258 SPSB1Q96BD6 273 aa7.9□□□□□ -1.14
COL6A3-210ENST00000473258 DAPP1Q9UN19 280 aa7.9□□□□□ -1.14
COL6A3-210ENST00000473258 DIP2CQ9Y2E4 1556 aa7.9□□□□□ -1.14
COL6A3-210ENST00000473258 ADGBQ8N7X0 1667 aa7.9□□□□□ -1.14
COL6A3-210ENST00000473258 UPK1AO00322 258 aa7.9□□□□□ -1.14
COL6A3-210ENST00000473258 TIMP1P01033 207 aa7.9□□□□□ -1.14
COL6A3-210ENST00000473258 TSPOP30536 169 aa7.9□□□□□ -1.14
COL6A3-210ENST00000473258 HMGA2P52926 109 aa7.9□□□□□ -1.14
COL6A3-210ENST00000473258 C1orf140Q5VVS0 124 aa7.9□□□□□ -1.14
COL6A3-210ENST00000473258 H1FNTQ75WM6 255 aaPredicted RBP7.9□□□□□ -1.14
COL6A3-210ENST00000473258 AAED1Q7RTV5 226 aa7.9□□□□□ -1.14
COL6A3-210ENST00000473258 KIAA0100Q14667 2235 aaKnown RBP7.9□□□□□ -1.14
COL6A3-210ENST00000473258 LOC101059915A0A1B0GWI6 518 aaPredicted RBP7.9□□□□□ -1.14
COL6A3-210ENST00000473258 M0R135 149 aa7.9□□□□□ -1.14
COL6A3-210ENST00000473258 RRHO14718 337 aa7.9□□□□□ -1.14
COL6A3-210ENST00000473258 TSPAN2O60636 221 aa7.9□□□□□ -1.14
COL6A3-210ENST00000473258 LYZL6O75951 148 aa7.9□□□□□ -1.14
COL6A3-210ENST00000473258 TDGF1P13385 188 aa7.9□□□□□ -1.14
COL6A3-210ENST00000473258 CAPZBP47756 277 aa7.9□□□□□ -1.14
COL6A3-210ENST00000473258 PRSS8Q16651 343 aa7.9□□□□□ -1.14
COL6A3-210ENST00000473258 WDR38Q5JTN6 314 aa7.9□□□□□ -1.14
COL6A3-210ENST00000473258 OR2Z1Q8NG97 314 aa7.9□□□□□ -1.14
COL6A3-210ENST00000473258 RND1Q92730 232 aa7.9□□□□□ -1.14
COL6A3-210ENST00000473258 ZNF799Q96GE5 643 aa7.9□□□□□ -1.14
COL6A3-210ENST00000473258 SUSD3Q96L08 255 aa7.9□□□□□ -1.14
COL6A3-210ENST00000473258 RAB1BQ9H0U4 201 aa7.9□□□□□ -1.14
COL6A3-210ENST00000473258 PRSS21Q9Y6M0 314 aa7.9□□□□□ -1.14
COL6A3-210ENST00000473258 EML2O95834 649 aa7.9□□□□□ -1.15
COL6A3-210ENST00000473258 GZMBP10144 247 aa7.9□□□□□ -1.15
COL6A3-210ENST00000473258 OPRK1P41145 380 aa7.9□□□□□ -1.15
COL6A3-210ENST00000473258 TMEM176BQ3YBM2 270 aaPredicted RBP7.9□□□□□ -1.15
COL6A3-210ENST00000473258 ZNF585BQ52M93 769 aa7.9□□□□□ -1.15
COL6A3-210ENST00000473258 C1orf174Q8IYL3 243 aa7.9□□□□□ -1.15
COL6A3-210ENST00000473258 ZNF683Q8IZ20 524 aa7.9□□□□□ -1.15
COL6A3-210ENST00000473258 FBXL14Q8N1E6 418 aa7.9□□□□□ -1.15
COL6A3-210ENST00000473258 SPSB4Q96A44 273 aa7.9□□□□□ -1.15
COL6A3-210ENST00000473258 SMIM8Q96KF7 97 aa7.9□□□□□ -1.15
COL6A3-210ENST00000473258 PRELID3AQ96N28 172 aa7.9□□□□□ -1.15
COL6A3-210ENST00000473258 FOXC2Q99958 501 aa7.9□□□□□ -1.15
COL6A3-210ENST00000473258 RTL8AQ9BWD3 113 aa7.9□□□□□ -1.15
COL6A3-210ENST00000473258 A0A1B0GU03 582 aa7.89□□□□□ -1.15
COL6A3-210ENST00000473258 LIMS1P48059 325 aa7.89□□□□□ -1.15
COL6A3-210ENST00000473258 PLAURQ03405 335 aa7.89□□□□□ -1.15
COL6A3-210ENST00000473258 SRYQ05066 204 aa7.89□□□□□ -1.15
COL6A3-210ENST00000473258 ZNF260Q3ZCT1 412 aa7.89□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 66.5 ms