RNA–Protein interactions for RNA: ENST00000471567.1

SDC3-203, Transcript of syndecan 3, humanhuman

TSL 3

Gene SDC3, Length 589 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-203ENST00000471567 FAM189A2Q15884 450 aa12.42□□□□□ -0.42
SDC3-203ENST00000471567 AANATQ16613 207 aa12.42□□□□□ -0.42
SDC3-203ENST00000471567 MINOS1Q5TGZ0 78 aa12.42□□□□□ -0.42
SDC3-203ENST00000471567 ABHD12Q8N2K0 398 aa12.42□□□□□ -0.42
SDC3-203ENST00000471567 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP12.42□□□□□ -0.42
SDC3-203ENST00000471567 YIPF6Q96EC8 236 aa12.42□□□□□ -0.42
SDC3-203ENST00000471567 MALSU1Q96EH3 234 aa12.42□□□□□ -0.42
SDC3-203ENST00000471567 KIRREL1Q96J84 757 aa12.42□□□□□ -0.42
SDC3-203ENST00000471567 DUX5Q96PT3 197 aa12.42□□□□□ -0.42
SDC3-203ENST00000471567 NICN1Q9BSH3 213 aa12.42□□□□□ -0.42
SDC3-203ENST00000471567 RAB9BQ9NP90 201 aa12.42□□□□□ -0.42
SDC3-203ENST00000471567 IDI2-AS1Q9NZ38 188 aa12.42□□□□□ -0.42
SDC3-203ENST00000471567 MINOS1-NBL1R4GNA1 71 aa12.42□□□□□ -0.42
SDC3-203ENST00000471567 A0A0A6YYD4 124 aa12.41□□□□□ -0.42
SDC3-203ENST00000471567 LOC100506127A0A0U1RQW1 187 aa12.41□□□□□ -0.42
SDC3-203ENST00000471567 TMEM272A0A1B0GTI8 110 aa12.41□□□□□ -0.42
SDC3-203ENST00000471567 UBE2QL1A1L167 161 aa12.41□□□□□ -0.42
SDC3-203ENST00000471567 OMGP23515 440 aa12.41□□□□□ -0.42
SDC3-203ENST00000471567 GDNFP39905 211 aa12.41□□□□□ -0.42
SDC3-203ENST00000471567 DYNC1I2Q13409 638 aaKnown RBP12.41□□□□□ -0.42
SDC3-203ENST00000471567 NKAPLQ5M9Q1 402 aa12.41□□□□□ -0.42
SDC3-203ENST00000471567 C6orf183Q5T699 404 aa12.41□□□□□ -0.42
SDC3-203ENST00000471567 C16orf87Q6PH81 154 aa12.41□□□□□ -0.42
SDC3-203ENST00000471567 TRAT1Q6PIZ9 186 aa12.41□□□□□ -0.42
SDC3-203ENST00000471567 SLC16A12Q6ZSM3 486 aa12.41□□□□□ -0.42
SDC3-203ENST00000471567 NR2C2APQ86WQ0 139 aa12.41□□□□□ -0.42
SDC3-203ENST00000471567 ZNF596Q8TC21 504 aa12.41□□□□□ -0.42
SDC3-203ENST00000471567 CCDC107Q8WV48 283 aa12.41□□□□□ -0.42
SDC3-203ENST00000471567 PTX4Q96A99 478 aa12.41□□□□□ -0.42
SDC3-203ENST00000471567 PLEKHJ1Q9NW61 149 aa12.41□□□□□ -0.42
SDC3-203ENST00000471567 TRAPPC2LQ9UL33 140 aa12.41□□□□□ -0.42
SDC3-203ENST00000471567 HSF4Q9ULV5 492 aa12.41□□□□□ -0.42
SDC3-203ENST00000471567 TRAV39A0A0B4J263 110 aa12.4□□□□□ -0.42
SDC3-203ENST00000471567 BTBD17A6NE02 478 aa12.4□□□□□ -0.42
SDC3-203ENST00000471567 AIREO43918 545 aa12.4□□□□□ -0.42
SDC3-203ENST00000471567 IGHV4-59P01825 116 aa12.4□□□□□ -0.42
SDC3-203ENST00000471567 RAB6AP20340 208 aa12.4□□□□□ -0.42
SDC3-203ENST00000471567 SDC2P34741 201 aa12.4□□□□□ -0.42
SDC3-203ENST00000471567 PRRX1P54821 245 aa12.4□□□□□ -0.42
SDC3-203ENST00000471567 BAIAP2L2Q6UXY1 529 aa12.4□□□□□ -0.42
SDC3-203ENST00000471567 C6orf201Q7Z4U5 140 aa12.4□□□□□ -0.42
SDC3-203ENST00000471567 LHFPL4Q7Z7J7 247 aa12.4□□□□□ -0.42
SDC3-203ENST00000471567 ZNF554Q86TJ5 538 aa12.4□□□□□ -0.42
SDC3-203ENST00000471567 OR56B1Q8NGI3 324 aa12.4□□□□□ -0.42
SDC3-203ENST00000471567 OR52M1Q8NGK5 317 aa12.4□□□□□ -0.42
SDC3-203ENST00000471567 OR5R1Q8NH85 324 aa12.4□□□□□ -0.42
SDC3-203ENST00000471567 SPATA3Q8NHX4 192 aa12.4□□□□□ -0.42
SDC3-203ENST00000471567 RFESDQ8TAC1 157 aa12.4□□□□□ -0.42
SDC3-203ENST00000471567 C17orf50Q8WW18 174 aa12.4□□□□□ -0.42
SDC3-203ENST00000471567 DYRK2Q92630 601 aa12.4□□□□□ -0.42
SDC3-203ENST00000471567 ARL11Q969Q4 196 aa12.4□□□□□ -0.42
SDC3-203ENST00000471567 SULT4A1Q9BR01 284 aa12.4□□□□□ -0.42
SDC3-203ENST00000471567 FAAP24Q9BTP7 215 aa12.4□□□□□ -0.42
SDC3-203ENST00000471567 CENPOQ9BU64 300 aa12.4□□□□□ -0.42
SDC3-203ENST00000471567 LIN7BQ9HAP6 207 aa12.4□□□□□ -0.42
SDC3-203ENST00000471567 FOXI3A8MTJ6 420 aaPredicted RBP12.39□□□□□ -0.43
SDC3-203ENST00000471567 C15orf65H3BRN8 121 aa12.39□□□□□ -0.43
SDC3-203ENST00000471567 TOR1AO14656 332 aa12.39□□□□□ -0.43
SDC3-203ENST00000471567 SOCS1O15524 211 aa12.39□□□□□ -0.43
SDC3-203ENST00000471567 IGLV1-47P01700 117 aa12.39□□□□□ -0.43
SDC3-203ENST00000471567 SMIM18P0DKX4 95 aa12.39□□□□□ -0.43
SDC3-203ENST00000471567 NFYBP25208 207 aa12.39□□□□□ -0.43
SDC3-203ENST00000471567 HTR1DP28221 377 aa12.39□□□□□ -0.43
SDC3-203ENST00000471567 SSTR5P35346 364 aa12.39□□□□□ -0.43
SDC3-203ENST00000471567 RPL15P61313 204 aaKnown RBP12.39□□□□□ -0.43
SDC3-203ENST00000471567 TMEM30BQ3MIR4 351 aa12.39□□□□□ -0.43
SDC3-203ENST00000471567 OR4P4Q8NGL7 312 aa12.39□□□□□ -0.43
SDC3-203ENST00000471567 OR4K15Q8NH41 348 aa12.39□□□□□ -0.43
SDC3-203ENST00000471567 OR9G1Q8NH87 305 aa12.39□□□□□ -0.43
SDC3-203ENST00000471567 CREB3L1Q96BA8 519 aa12.39□□□□□ -0.43
SDC3-203ENST00000471567 CHIAQ9BZP6 476 aa12.39□□□□□ -0.43
SDC3-203ENST00000471567 RIMS4Q9H426 269 aaPredicted RBP12.39□□□□□ -0.43
SDC3-203ENST00000471567 RNF167Q9H6Y7 350 aa12.39□□□□□ -0.43
SDC3-203ENST00000471567 ZNF286AQ9HBT8 521 aa12.39□□□□□ -0.43
SDC3-203ENST00000471567 MBNL3Q9NUK0 354 aaKnown RBP12.39□□□□□ -0.43
SDC3-203ENST00000471567 TMEM89A2RUT3 159 aa12.38□□□□□ -0.43
SDC3-203ENST00000471567 SMIM30A4D0T7 59 aa12.38□□□□□ -0.43
SDC3-203ENST00000471567 POM121CA8CG34 1229 aa12.38□□□□□ -0.43
SDC3-203ENST00000471567 VGLL3A8MV65 326 aa12.38□□□□□ -0.43
SDC3-203ENST00000471567 F2RL2O00254 374 aa12.38□□□□□ -0.43
SDC3-203ENST00000471567 SPINT2O43291 252 aa12.38□□□□□ -0.43
SDC3-203ENST00000471567 TMEM127O75204 238 aa12.38□□□□□ -0.43
SDC3-203ENST00000471567 SLC2A2P11168 524 aaPredicted RBP12.38□□□□□ -0.43
SDC3-203ENST00000471567 VEGFCP49767 419 aa12.38□□□□□ -0.43
SDC3-203ENST00000471567 TMEM50BP56557 158 aa12.38□□□□□ -0.43
SDC3-203ENST00000471567 ACTG1P63261 375 aa12.38□□□□□ -0.43
SDC3-203ENST00000471567 LRRC75BQ2VPJ9 315 aa12.38□□□□□ -0.43
SDC3-203ENST00000471567 LDLRAD2Q5SZI1 272 aa12.38□□□□□ -0.43
SDC3-203ENST00000471567 SFXN4Q6P4A7 337 aa12.38□□□□□ -0.43
SDC3-203ENST00000471567 Q6ZTK2 550 aa12.38□□□□□ -0.43
SDC3-203ENST00000471567 OR13F1Q8NGS4 319 aa12.38□□□□□ -0.43
SDC3-203ENST00000471567 NDNFQ8TB73 568 aa12.38□□□□□ -0.43
SDC3-203ENST00000471567 MRPL30Q8TCC3 161 aaKnown RBP12.38□□□□□ -0.43
SDC3-203ENST00000471567 SSX3Q99909 188 aa12.38□□□□□ -0.43
SDC3-203ENST00000471567 TNFRSF19Q9NS68 423 aa12.38□□□□□ -0.43
SDC3-203ENST00000471567 KCNIP1Q9NZI2 227 aa12.38□□□□□ -0.43
SDC3-203ENST00000471567 DPM3Q9P2X0 92 aa12.38□□□□□ -0.43
SDC3-203ENST00000471567 TRBV6-6A0A0A6YYG2 114 aa12.37□□□□□ -0.43
SDC3-203ENST00000471567 METTL21EPA6NDL7 271 aa12.37□□□□□ -0.43
SDC3-203ENST00000471567 LEUTXA8MZ59 168 aa12.37□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms