RNA–Protein interactions for RNA: ENST00000466342.1

SQSTM1-206, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 808 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-206ENST00000466342 A0A1W2PRV1 198 aa9.68□□□□□ -0.86
SQSTM1-206ENST00000466342 ODAMA1E959 279 aa9.68□□□□□ -0.86
SQSTM1-206ENST00000466342 C17orf98A8MV24 154 aa9.68□□□□□ -0.86
SQSTM1-206ENST00000466342 H3BUI4 141 aa9.68□□□□□ -0.86
SQSTM1-206ENST00000466342 LDLRAD4O15165 306 aa9.68□□□□□ -0.86
SQSTM1-206ENST00000466342 RBP4P02753 201 aa9.68□□□□□ -0.86
SQSTM1-206ENST00000466342 SLC2A2P11168 524 aaPredicted RBP9.68□□□□□ -0.86
SQSTM1-206ENST00000466342 FUT3P21217 361 aa9.68□□□□□ -0.86
SQSTM1-206ENST00000466342 TGFBR1P36897 503 aa9.68□□□□□ -0.86
SQSTM1-206ENST00000466342 GLIPR1P48060 266 aa9.68□□□□□ -0.86
SQSTM1-206ENST00000466342 DLX6P56179 175 aa9.68□□□□□ -0.86
SQSTM1-206ENST00000466342 LSM3P62310 102 aaKnown RBP9.68□□□□□ -0.86
SQSTM1-206ENST00000466342 GUCA2AQ02747 115 aa9.68□□□□□ -0.86
SQSTM1-206ENST00000466342 MXD1Q05195 221 aa9.68□□□□□ -0.86
SQSTM1-206ENST00000466342 RSBN1Q5VWQ0 802 aaPredicted RBP9.68□□□□□ -0.86
SQSTM1-206ENST00000466342 SIGIRRQ6IA17 410 aa9.68□□□□□ -0.86
SQSTM1-206ENST00000466342 RAB12Q6IQ22 244 aa9.68□□□□□ -0.86
SQSTM1-206ENST00000466342 SFXN4Q6P4A7 337 aa9.68□□□□□ -0.86
SQSTM1-206ENST00000466342 CCBE1Q6UXH8 406 aaPredicted RBP9.68□□□□□ -0.86
SQSTM1-206ENST00000466342 GPR141Q7Z602 305 aa9.68□□□□□ -0.86
SQSTM1-206ENST00000466342 PLPPR1Q8TBJ4 325 aa9.68□□□□□ -0.86
SQSTM1-206ENST00000466342 NEK7Q8TDX7 302 aa9.68□□□□□ -0.86
SQSTM1-206ENST00000466342 ZNF714Q96N38 554 aa9.68□□□□□ -0.86
SQSTM1-206ENST00000466342 NICN1Q9BSH3 213 aa9.68□□□□□ -0.86
SQSTM1-206ENST00000466342 URM1Q9BTM9 101 aaKnown RBP9.68□□□□□ -0.86
SQSTM1-206ENST00000466342 BARHL1Q9BZE3 327 aa9.68□□□□□ -0.86
SQSTM1-206ENST00000466342 LPAR5Q9H1C0 372 aa9.68□□□□□ -0.86
SQSTM1-206ENST00000466342 NCOR1P1Q9H4R4 102 aa9.68□□□□□ -0.86
SQSTM1-206ENST00000466342 METTL8Q9H825 291 aaKnown RBP9.68□□□□□ -0.86
SQSTM1-206ENST00000466342 LIN7BQ9HAP6 207 aa9.68□□□□□ -0.86
SQSTM1-206ENST00000466342 SIRT7Q9NRC8 400 aa9.68□□□□□ -0.86
SQSTM1-206ENST00000466342 ING3Q9NXR8 418 aa9.68□□□□□ -0.86
SQSTM1-206ENST00000466342 UBE2J1Q9Y385 318 aaPredicted RBP9.68□□□□□ -0.86
SQSTM1-206ENST00000466342 DNAH9Q9NYC9 4486 aa9.68□□□□□ -0.86
SQSTM1-206ENST00000466342 TRGV10A0A0A0MS01 117 aa9.67□□□□□ -0.86
SQSTM1-206ENST00000466342 MEX3AA1L020 520 aaKnown RBP9.67□□□□□ -0.86
SQSTM1-206ENST00000466342 MCRIP1C9JLW8 97 aa9.67□□□□□ -0.86
SQSTM1-206ENST00000466342 PDCD6O75340 191 aa9.67□□□□□ -0.86
SQSTM1-206ENST00000466342 GLAP06280 429 aa9.67□□□□□ -0.86
SQSTM1-206ENST00000466342 CLEC2LP0C7M8 214 aa9.67□□□□□ -0.86
SQSTM1-206ENST00000466342 ZNF728P0DKX0 622 aa9.67□□□□□ -0.86
SQSTM1-206ENST00000466342 RBM39Q14498 530 aaKnown RBP9.67□□□□□ -0.86
SQSTM1-206ENST00000466342 OXLD1Q5BKU9 147 aa9.67□□□□□ -0.86
SQSTM1-206ENST00000466342 SLC35E4Q6ICL7 350 aa9.67□□□□□ -0.86
SQSTM1-206ENST00000466342 SLC16A12Q6ZSM3 486 aa9.67□□□□□ -0.86
SQSTM1-206ENST00000466342 TRAPPC6BQ86SZ2 158 aa9.67□□□□□ -0.86
SQSTM1-206ENST00000466342 LDLRAD3Q86YD5 345 aa9.67□□□□□ -0.86
SQSTM1-206ENST00000466342 ANKRD13BQ86YJ7 626 aa9.67□□□□□ -0.86
SQSTM1-206ENST00000466342 FAM89BQ8N5H3 189 aa9.67□□□□□ -0.86
SQSTM1-206ENST00000466342 C11orf42Q8N5U0 333 aa9.67□□□□□ -0.86
SQSTM1-206ENST00000466342 CORO2AQ92828 525 aa9.67□□□□□ -0.86
SQSTM1-206ENST00000466342 OR6C3Q9NZP0 311 aa9.67□□□□□ -0.86
SQSTM1-206ENST00000466342 DAPK2Q9UIK4 370 aa9.67□□□□□ -0.86
SQSTM1-206ENST00000466342 RAB22AQ9UL26 194 aa9.67□□□□□ -0.86
SQSTM1-206ENST00000466342 FAM96BQ9Y3D0 163 aa9.67□□□□□ -0.86
SQSTM1-206ENST00000466342 PEX16Q9Y5Y5 336 aa9.67□□□□□ -0.86
SQSTM1-206ENST00000466342 NOTCH3Q9UM47 2321 aa9.66□□□□□ -0.86
SQSTM1-206ENST00000466342 MEIKINA0A087WXM9 373 aa9.66□□□□□ -0.86
SQSTM1-206ENST00000466342 A0A0A6YYD4 124 aa9.66□□□□□ -0.86
SQSTM1-206ENST00000466342 A0A0B4J203 849 aa9.66□□□□□ -0.86
SQSTM1-206ENST00000466342 A0A0U1RQK1 487 aa9.66□□□□□ -0.86
SQSTM1-206ENST00000466342 TMEM30CPA0ZSE6 113 aa9.66□□□□□ -0.86
SQSTM1-206ENST00000466342 GABARAPO95166 117 aa9.66□□□□□ -0.86
SQSTM1-206ENST00000466342 IL1AP01583 271 aa9.66□□□□□ -0.86
SQSTM1-206ENST00000466342 RAB6AP20340 208 aa9.66□□□□□ -0.86
SQSTM1-206ENST00000466342 CHATP28329 748 aa9.66□□□□□ -0.86
SQSTM1-206ENST00000466342 IER3P46695 156 aa9.66□□□□□ -0.86
SQSTM1-206ENST00000466342 DLX1P56177 255 aa9.66□□□□□ -0.86
SQSTM1-206ENST00000466342 ERVFRD-1P60508 538 aa9.66□□□□□ -0.86
SQSTM1-206ENST00000466342 NCS1P62166 190 aa9.66□□□□□ -0.86
SQSTM1-206ENST00000466342 GPR107Q5VW38 600 aa9.66□□□□□ -0.86
SQSTM1-206ENST00000466342 NCR3LG1Q68D85 454 aa9.66□□□□□ -0.86
SQSTM1-206ENST00000466342 PIP4P2Q8N4L2 257 aa9.66□□□□□ -0.86
SQSTM1-206ENST00000466342 TNFRSF14Q92956 283 aa9.66□□□□□ -0.86
SQSTM1-206ENST00000466342 PTX4Q96A99 478 aa9.66□□□□□ -0.86
SQSTM1-206ENST00000466342 NEDD4LQ96PU5 975 aa9.66□□□□□ -0.86
SQSTM1-206ENST00000466342 DPAGT1Q9H3H5 408 aa9.66□□□□□ -0.86
SQSTM1-206ENST00000466342 GAL3ST2Q9H3Q3 398 aa9.66□□□□□ -0.86
SQSTM1-206ENST00000466342 C16orf95Q9H693 158 aa9.66□□□□□ -0.86
SQSTM1-206ENST00000466342 TAS2R3Q9NYW6 316 aa9.66□□□□□ -0.86
SQSTM1-206ENST00000466342 KIF25Q9UIL4 384 aa9.66□□□□□ -0.86
SQSTM1-206ENST00000466342 ZNF729A6NN14 1252 aaPredicted RBP9.65□□□□□ -0.86
SQSTM1-206ENST00000466342 FOXI3A8MTJ6 420 aaPredicted RBP9.65□□□□□ -0.86
SQSTM1-206ENST00000466342 RNASEK-C17orf49H0YIS7 233 aa9.65□□□□□ -0.86
SQSTM1-206ENST00000466342 GPR137BO60478 399 aa9.65□□□□□ -0.86
SQSTM1-206ENST00000466342 TMEM127O75204 238 aa9.65□□□□□ -0.86
SQSTM1-206ENST00000466342 CA11O75493 328 aa9.65□□□□□ -0.86
SQSTM1-206ENST00000466342 FBP1P09467 338 aa9.65□□□□□ -0.86
SQSTM1-206ENST00000466342 BLVRBP30043 206 aaPredicted RBP9.65□□□□□ -0.86
SQSTM1-206ENST00000466342 GLP1RP43220 463 aa9.65□□□□□ -0.86
SQSTM1-206ENST00000466342 RPL5P46777 297 aaKnown RBP9.65□□□□□ -0.86
SQSTM1-206ENST00000466342 UBE2E1P51965 193 aa9.65□□□□□ -0.86
SQSTM1-206ENST00000466342 SCAND1P57086 179 aa9.65□□□□□ -0.86
SQSTM1-206ENST00000466342 VBP1P61758 197 aa9.65□□□□□ -0.86
SQSTM1-206ENST00000466342 PRB3Q04118 309 aaPredicted RBP9.65□□□□□ -0.86
SQSTM1-206ENST00000466342 PLA2G7Q13093 441 aa9.65□□□□□ -0.86
SQSTM1-206ENST00000466342 KLRD1Q13241 179 aa9.65□□□□□ -0.86
SQSTM1-206ENST00000466342 NKAPLQ5M9Q1 402 aa9.65□□□□□ -0.86
SQSTM1-206ENST00000466342 IDNKQ5T6J7 187 aa9.65□□□□□ -0.86
SQSTM1-206ENST00000466342 ZNF497Q6ZNH5 498 aa9.65□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms