RNA–Protein interactions for RNA: ENST00000452724.1

USP40-209, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 453 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-209ENST00000452724 CCL26Q9Y258 94 aa1.43□□□□□ -2.18
USP40-209ENST00000452724 ARAP3Q8WWN8 1544 aa1.42□□□□□ -2.18
USP40-209ENST00000452724 YLPM1P49750 1951 aaKnown RBP1.42□□□□□ -2.18
USP40-209ENST00000452724 A0A1B0GW15 77 aa1.42□□□□□ -2.18
USP40-209ENST00000452724 GOLGA8IPA6NC78 632 aa1.42□□□□□ -2.18
USP40-209ENST00000452724 NDUFS8O00217 210 aa1.42□□□□□ -2.18
USP40-209ENST00000452724 PLPP3O14495 311 aa1.42□□□□□ -2.18
USP40-209ENST00000452724 FGF16O43320 207 aa1.42□□□□□ -2.18
USP40-209ENST00000452724 S100A9P06702 114 aaKnown RBP1.42□□□□□ -2.18
USP40-209ENST00000452724 INPP1P49441 399 aa1.42□□□□□ -2.18
USP40-209ENST00000452724 RAB2AP61019 212 aa1.42□□□□□ -2.18
USP40-209ENST00000452724 UBE2KP61086 200 aa1.42□□□□□ -2.18
USP40-209ENST00000452724 CD164Q04900 197 aa1.42□□□□□ -2.18
USP40-209ENST00000452724 OR8G1Q15617 311 aa1.42□□□□□ -2.18
USP40-209ENST00000452724 ACSBG2Q5FVE4 666 aa1.42□□□□□ -2.18
USP40-209ENST00000452724 FAM162BQ5T6X4 162 aa1.42□□□□□ -2.18
USP40-209ENST00000452724 ZNF767PQ75MW2 155 aa1.42□□□□□ -2.18
USP40-209ENST00000452724 ST13P4Q8IZP2 240 aaPredicted RBP1.42□□□□□ -2.18
USP40-209ENST00000452724 DNAAF3Q8N9W5 541 aa1.42□□□□□ -2.18
USP40-209ENST00000452724 OR5P2Q8WZ92 322 aa1.42□□□□□ -2.18
USP40-209ENST00000452724 DDIT4LQ96D03 193 aa1.42□□□□□ -2.18
USP40-209ENST00000452724 MSANTD3Q96H12 275 aa1.42□□□□□ -2.18
USP40-209ENST00000452724 PGLYRP3Q96LB9 341 aa1.42□□□□□ -2.18
USP40-209ENST00000452724 FAAP24Q9BTP7 215 aa1.42□□□□□ -2.18
USP40-209ENST00000452724 POTEKPQ9BYX7 375 aa1.42□□□□□ -2.18
USP40-209ENST00000452724 FBXL15Q9H469 300 aa1.42□□□□□ -2.18
USP40-209ENST00000452724 GOLPH3Q9H4A6 298 aa1.42□□□□□ -2.18
USP40-209ENST00000452724 XKR8Q9H6D3 395 aa1.42□□□□□ -2.18
USP40-209ENST00000452724 METTL8Q9H825 291 aaKnown RBP1.42□□□□□ -2.18
USP40-209ENST00000452724 IFT46Q9NQC8 304 aa1.42□□□□□ -2.18
USP40-209ENST00000452724 SHANK3Q9BYB0 1731 aa1.42□□□□□ -2.18
USP40-209ENST00000452724 CEP170Q5SW79 1584 aa1.42□□□□□ -2.18
USP40-209ENST00000452724 LOC102725191A0A1B0GVB3 256 aa1.41□□□□□ -2.18
USP40-209ENST00000452724 FABP7O15540 132 aa1.41□□□□□ -2.18
USP40-209ENST00000452724 LTAP01374 205 aa1.41□□□□□ -2.18
USP40-209ENST00000452724 CCDC172P0C7W6 258 aa1.41□□□□□ -2.18
USP40-209ENST00000452724 BLVRBP30043 206 aaPredicted RBP1.41□□□□□ -2.18
USP40-209ENST00000452724 MAGEA3P43357 314 aa1.41□□□□□ -2.18
USP40-209ENST00000452724 AQP5P55064 265 aa1.41□□□□□ -2.18
USP40-209ENST00000452724 TNNC1P63316 161 aa1.41□□□□□ -2.18
USP40-209ENST00000452724 TSPAN31Q12999 210 aa1.41□□□□□ -2.18
USP40-209ENST00000452724 CDRT4Q8N9R6 151 aa1.41□□□□□ -2.18
USP40-209ENST00000452724 CD200R1Q8TD46 325 aa1.41□□□□□ -2.18
USP40-209ENST00000452724 DTD1Q8TEA8 209 aa1.41□□□□□ -2.18
USP40-209ENST00000452724 IFT81Q8WYA0 676 aa1.41□□□□□ -2.18
USP40-209ENST00000452724 GTF2H4Q92759 462 aa1.41□□□□□ -2.18
USP40-209ENST00000452724 C19orf60Q96EN9 201 aa1.41□□□□□ -2.18
USP40-209ENST00000452724 CATSPER2Q96P56 530 aa1.41□□□□□ -2.18
USP40-209ENST00000452724 PRSS27Q9BQR3 290 aa1.41□□□□□ -2.18
USP40-209ENST00000452724 HAUS4Q9H6D7 363 aa1.41□□□□□ -2.18
USP40-209ENST00000452724 TAS2R13Q9NYV9 303 aa1.41□□□□□ -2.18
USP40-209ENST00000452724 LCTP09848 1927 aa1.4□□□□□ -2.18
USP40-209ENST00000452724 IGKV1-12A0A0C4DH73 117 aa1.4□□□□□ -2.19
USP40-209ENST00000452724 IGSF23A1L1A6 192 aa1.4□□□□□ -2.19
USP40-209ENST00000452724 A8MWP6 167 aa1.4□□□□□ -2.19
USP40-209ENST00000452724 LY6LH3BQJ8 138 aa1.4□□□□□ -2.19
USP40-209ENST00000452724 PSMD11O00231 422 aa1.4□□□□□ -2.19
USP40-209ENST00000452724 TOR1AO14656 332 aa1.4□□□□□ -2.19
USP40-209ENST00000452724 IGKV1D-12P01611 117 aa1.4□□□□□ -2.19
USP40-209ENST00000452724 AKR1C4P17516 323 aa1.4□□□□□ -2.19
USP40-209ENST00000452724 C1QTNF8P60827 252 aa1.4□□□□□ -2.19
USP40-209ENST00000452724 BSXQ3C1V8 233 aa1.4□□□□□ -2.19
USP40-209ENST00000452724 AADACL4Q5VUY2 407 aa1.4□□□□□ -2.19
USP40-209ENST00000452724 OR2Y1Q8NGV0 311 aa1.4□□□□□ -2.19
USP40-209ENST00000452724 FAM45AQ8TCE6 357 aa1.4□□□□□ -2.19
USP40-209ENST00000452724 TMEM239Q8WW34 195 aa1.4□□□□□ -2.19
USP40-209ENST00000452724 TXNDC17Q9BRA2 123 aa1.4□□□□□ -2.19
USP40-209ENST00000452724 TTTY12Q9BZ98 90 aa1.4□□□□□ -2.19
USP40-209ENST00000452724 KNCNA6PVL3 124 aa1.39□□□□□ -2.19
USP40-209ENST00000452724 ODF3BA8MYP8 253 aa1.39□□□□□ -2.19
USP40-209ENST00000452724 C8orf87E5RJ46 101 aa1.39□□□□□ -2.19
USP40-209ENST00000452724 CRXO43186 299 aaPredicted RBP1.39□□□□□ -2.19
USP40-209ENST00000452724 DENRO43583 198 aaKnown RBP1.39□□□□□ -2.19
USP40-209ENST00000452724 S1PR2O95136 353 aa1.39□□□□□ -2.19
USP40-209ENST00000452724 EPPINO95925 133 aa1.39□□□□□ -2.19
USP40-209ENST00000452724 APOA1P02647 267 aa1.39□□□□□ -2.19
USP40-209ENST00000452724 CCL2P13500 99 aa1.39□□□□□ -2.19
USP40-209ENST00000452724 CPMP14384 443 aa1.39□□□□□ -2.19
USP40-209ENST00000452724 ETV1P50549 477 aa1.39□□□□□ -2.19
USP40-209ENST00000452724 ZNF140P52738 457 aaPredicted RBP1.39□□□□□ -2.19
USP40-209ENST00000452724 PSG3Q16557 428 aa1.39□□□□□ -2.19
USP40-209ENST00000452724 HES3Q5TGS1 186 aa1.39□□□□□ -2.19
USP40-209ENST00000452724 AHSA2Q719I0 299 aa1.39□□□□□ -2.19
USP40-209ENST00000452724 TRIML2Q8N7C3 387 aa1.39□□□□□ -2.19
USP40-209ENST00000452724 OR4C16Q8NGL9 310 aa1.39□□□□□ -2.19
USP40-209ENST00000452724 RNASE11Q8TAA1 199 aaKnown RBP1.39□□□□□ -2.19
USP40-209ENST00000452724 MRAP2Q96G30 205 aa1.39□□□□□ -2.19
USP40-209ENST00000452724 MAT2BQ9NZL9 334 aa1.39□□□□□ -2.19
USP40-209ENST00000452724 SNX24Q9Y343 169 aa1.39□□□□□ -2.19
USP40-209ENST00000452724 WASHC3Q9Y3C0 194 aa1.39□□□□□ -2.19
USP40-209ENST00000452724 CRB1P82279 1406 aa1.39□□□□□ -2.19
USP40-209ENST00000452724 FAM25EA8MYX2 175 aa1.38□□□□□ -2.19
USP40-209ENST00000452724 J3QLI3 93 aa1.38□□□□□ -2.19
USP40-209ENST00000452724 POLR3GO15318 223 aaPredicted RBP1.38□□□□□ -2.19
USP40-209ENST00000452724 CST4P01036 141 aa1.38□□□□□ -2.19
USP40-209ENST00000452724 TPM1P09493 284 aa1.38□□□□□ -2.19
USP40-209ENST00000452724 GABRA3P34903 492 aa1.38□□□□□ -2.19
USP40-209ENST00000452724 UGT2B10P36537 528 aa1.38□□□□□ -2.19
USP40-209ENST00000452724 KCNJ3P48549 501 aa1.38□□□□□ -2.19
USP40-209ENST00000452724 HTR4Q13639 388 aa1.38□□□□□ -2.19
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms