RNA–Protein interactions for RNA: ENST00000431357.1

USP4-205, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 2,141 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-205ENST00000431357 SPSB3Q6PJ21 355 aa9.68□□□□□ -0.86
USP4-205ENST00000431357 C6orf15Q6UXA7 325 aaPredicted RBP9.68□□□□□ -0.86
USP4-205ENST00000431357 SUMF1Q8NBK3 374 aa9.68□□□□□ -0.86
USP4-205ENST00000431357 NEK7Q8TDX7 302 aa9.68□□□□□ -0.86
USP4-205ENST00000431357 ISOC2Q96AB3 205 aa9.68□□□□□ -0.86
USP4-205ENST00000431357 RBMXL1Q96E39 390 aaKnown RBP9.68□□□□□ -0.86
USP4-205ENST00000431357 LRP5LA4QPB2 252 aa9.67□□□□□ -0.86
USP4-205ENST00000431357 SS18L1O75177 396 aaPredicted RBP9.67□□□□□ -0.86
USP4-205ENST00000431357 DFFBO76075 338 aa9.67□□□□□ -0.86
USP4-205ENST00000431357 SYNGR4O95473 234 aa9.67□□□□□ -0.86
USP4-205ENST00000431357 IGHV2-5P01817 119 aa9.67□□□□□ -0.86
USP4-205ENST00000431357 DAOP14920 347 aa9.67□□□□□ -0.86
USP4-205ENST00000431357 RAC2P15153 192 aa9.67□□□□□ -0.86
USP4-205ENST00000431357 ITGA3P26006 1051 aa9.67□□□□□ -0.86
USP4-205ENST00000431357 ARR3P36575 388 aa9.67□□□□□ -0.86
USP4-205ENST00000431357 ASCL1P50553 236 aa9.67□□□□□ -0.86
USP4-205ENST00000431357 RPS18P62269 152 aaKnown RBP9.67□□□□□ -0.86
USP4-205ENST00000431357 TLE4Q04727 773 aa9.67□□□□□ -0.86
USP4-205ENST00000431357 HERPUD1Q15011 391 aa9.67□□□□□ -0.86
USP4-205ENST00000431357 AKR1C8PQ5T2L2 129 aa9.67□□□□□ -0.86
USP4-205ENST00000431357 FAM24BQ8N5W8 94 aa9.67□□□□□ -0.86
USP4-205ENST00000431357 ZFP62Q8NB50 900 aaPredicted RBP9.67□□□□□ -0.86
USP4-205ENST00000431357 TMEM171Q8WVE6 324 aa9.67□□□□□ -0.86
USP4-205ENST00000431357 FAM173AQ9BQD7 235 aa9.67□□□□□ -0.86
USP4-205ENST00000431357 ZPBPQ9BS86 351 aa9.67□□□□□ -0.86
USP4-205ENST00000431357 GGACTQ9BVM4 153 aa9.67□□□□□ -0.86
USP4-205ENST00000431357 CCL28Q9NRJ3 127 aa9.67□□□□□ -0.86
USP4-205ENST00000431357 MTCH1Q9NZJ7 389 aa9.67□□□□□ -0.86
USP4-205ENST00000431357 B4GALT7Q9UBV7 327 aa9.67□□□□□ -0.86
USP4-205ENST00000431357 A0A087WWC5 75 aa9.67□□□□□ -0.86
USP4-205ENST00000431357 IGKV1D-13A0A0B4J2D9 117 aa9.67□□□□□ -0.86
USP4-205ENST00000431357 C5orf49A4QMS7 147 aa9.67□□□□□ -0.86
USP4-205ENST00000431357 PINLYPA6NC86 204 aa9.67□□□□□ -0.86
USP4-205ENST00000431357 MARCH11A6NNE9 402 aa9.67□□□□□ -0.86
USP4-205ENST00000431357 HSD17B6O14756 317 aa9.67□□□□□ -0.86
USP4-205ENST00000431357 PGLYRP1O75594 196 aaPredicted RBP9.67□□□□□ -0.86
USP4-205ENST00000431357 OR2C1O95371 312 aa9.67□□□□□ -0.86
USP4-205ENST00000431357 HSPB1P04792 205 aaKnown RBP9.67□□□□□ -0.86
USP4-205ENST00000431357 IGKV1-13P0DP09 117 aa9.67□□□□□ -0.86
USP4-205ENST00000431357 CCNOP22674 350 aa9.67□□□□□ -0.86
USP4-205ENST00000431357 OMGP23515 440 aa9.67□□□□□ -0.86
USP4-205ENST00000431357 RNPS1Q15287 305 aaKnown RBP9.67□□□□□ -0.86
USP4-205ENST00000431357 SP5Q6BEB4 398 aaPredicted RBP9.67□□□□□ -0.86
USP4-205ENST00000431357 PLPPR1Q8TBJ4 325 aa9.67□□□□□ -0.86
USP4-205ENST00000431357 ATP5SQ99766 215 aa9.67□□□□□ -0.86
USP4-205ENST00000431357 RARRES2Q99969 163 aa9.67□□□□□ -0.86
USP4-205ENST00000431357 FGF23Q9GZV9 251 aaPredicted RBP9.67□□□□□ -0.86
USP4-205ENST00000431357 MAGT1Q9H0U3 335 aa9.67□□□□□ -0.86
USP4-205ENST00000431357 GLRX2Q9NS18 164 aa9.67□□□□□ -0.86
USP4-205ENST00000431357 PUS1Q9Y606 427 aaKnown RBP eCLIP9.67□□□□□ -0.86
USP4-205ENST00000431357 A0A1B0GU03 582 aa9.66□□□□□ -0.86
USP4-205ENST00000431357 hCG_1809904A0A1W2PP81 198 aa9.66□□□□□ -0.86
USP4-205ENST00000431357 A0A1W2PPE2 198 aa9.66□□□□□ -0.86
USP4-205ENST00000431357 A0A1W2PR64 198 aa9.66□□□□□ -0.86
USP4-205ENST00000431357 A0A1W2PRV1 198 aa9.66□□□□□ -0.86
USP4-205ENST00000431357 AP4M1O00189 453 aa9.66□□□□□ -0.86
USP4-205ENST00000431357 CHST1O43916 411 aa9.66□□□□□ -0.86
USP4-205ENST00000431357 IGHV3-9P01782 118 aa9.66□□□□□ -0.86
USP4-205ENST00000431357 ARG1P05089 322 aa9.66□□□□□ -0.86
USP4-205ENST00000431357 SRP19P09132 144 aaKnown RBP9.66□□□□□ -0.86
USP4-205ENST00000431357 TDGF1P13385 188 aa9.66□□□□□ -0.86
USP4-205ENST00000431357 F2RP25116 425 aa9.66□□□□□ -0.86
USP4-205ENST00000431357 CASP6P55212 293 aa9.66□□□□□ -0.86
USP4-205ENST00000431357 RPL23AP62750 156 aaKnown RBP9.66□□□□□ -0.86
USP4-205ENST00000431357 FABP9Q0Z7S8 132 aa9.66□□□□□ -0.86
USP4-205ENST00000431357 ZNF506Q5JVG8 444 aa9.66□□□□□ -0.86
USP4-205ENST00000431357 ADAM5Q6NVV9 412 aa9.66□□□□□ -0.86
USP4-205ENST00000431357 BATF2Q8N1L9 274 aa9.66□□□□□ -0.86
USP4-205ENST00000431357 MAFAQ8NHW3 353 aaPredicted RBP9.66□□□□□ -0.86
USP4-205ENST00000431357 MRPL30Q8TCC3 161 aaKnown RBP9.66□□□□□ -0.86
USP4-205ENST00000431357 CT55Q8WUE5 264 aa9.66□□□□□ -0.86
USP4-205ENST00000431357 RAB24Q969Q5 203 aa9.66□□□□□ -0.86
USP4-205ENST00000431357 MRPL37Q9BZE1 423 aaKnown RBP9.66□□□□□ -0.86
USP4-205ENST00000431357 TOLLIPQ9H0E2 274 aa9.66□□□□□ -0.86
USP4-205ENST00000431357 LRFN1Q9P244 771 aa9.66□□□□□ -0.86
USP4-205ENST00000431357 MPC1Q9Y5U8 109 aa9.66□□□□□ -0.86
USP4-205ENST00000431357 USP34Q70CQ2 3546 aa9.66□□□□□ -0.86
USP4-205ENST00000431357 IGKV1-6A0A0C4DH72 117 aa9.65□□□□□ -0.86
USP4-205ENST00000431357 A0A1B0GV50 99 aa9.65□□□□□ -0.86
USP4-205ENST00000431357 MED19A0JLT2 244 aaPredicted RBP9.65□□□□□ -0.86
USP4-205ENST00000431357 OR5B21A6NL26 309 aa9.65□□□□□ -0.86
USP4-205ENST00000431357 TXNL1O43396 289 aa9.65□□□□□ -0.86
USP4-205ENST00000431357 LHX2P50458 406 aa9.65□□□□□ -0.86
USP4-205ENST00000431357 TAS2R30P59541 319 aa9.65□□□□□ -0.86
USP4-205ENST00000431357 PKIAP61925 76 aa9.65□□□□□ -0.86
USP4-205ENST00000431357 RPS23P62266 143 aaKnown RBP9.65□□□□□ -0.86
USP4-205ENST00000431357 CCL20P78556 96 aa9.65□□□□□ -0.86
USP4-205ENST00000431357 PLP2Q04941 152 aa9.65□□□□□ -0.86
USP4-205ENST00000431357 ZNF880Q6PDB4 577 aa9.65□□□□□ -0.86
USP4-205ENST00000431357 ZNF573Q86YE8 665 aa9.65□□□□□ -0.86
USP4-205ENST00000431357 ODF3L1Q8IXM7 274 aa9.65□□□□□ -0.86
USP4-205ENST00000431357 PSMF1Q92530 271 aa9.65□□□□□ -0.86
USP4-205ENST00000431357 YPEL4Q96NS1 127 aa9.65□□□□□ -0.86
USP4-205ENST00000431357 RAB40CQ96S21 281 aa9.65□□□□□ -0.86
USP4-205ENST00000431357 OR2W1Q9Y3N9 320 aa9.65□□□□□ -0.86
USP4-205ENST00000431357 RNF115Q9Y4L5 304 aa9.65□□□□□ -0.86
USP4-205ENST00000431357 NCKAP5O14513 1909 aa9.65□□□□□ -0.86
USP4-205ENST00000431357 A0A096LPE4 126 aa9.65□□□□□ -0.86
USP4-205ENST00000431357 TRAV1-1A0A0B4J248 108 aa9.65□□□□□ -0.86
USP4-205ENST00000431357 A0A1W2PPZ6 126 aa9.65□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms