RNA–Protein interactions for RNA: ENST00000377348.6

VPS28-202, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS28, Length 1,097 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-202ENST00000377348 FAM216AQ8WUB2 273 aa10.85□□□□□ -0.67
VPS28-202ENST00000377348 ZFAND2BQ8WV99 257 aa10.85□□□□□ -0.67
VPS28-202ENST00000377348 SULT4A1Q9BR01 284 aa10.85□□□□□ -0.67
VPS28-202ENST00000377348 CENPOQ9BU64 300 aa10.85□□□□□ -0.67
VPS28-202ENST00000377348 CLEC7AQ9BXN2 247 aa10.85□□□□□ -0.67
VPS28-202ENST00000377348 CHIAQ9BZP6 476 aa10.85□□□□□ -0.67
VPS28-202ENST00000377348 ZNF286AQ9HBT8 521 aa10.85□□□□□ -0.67
VPS28-202ENST00000377348 VCX3AQ9NNX9 186 aa10.85□□□□□ -0.67
VPS28-202ENST00000377348 ANK2Q01484 3957 aa10.84□□□□□ -0.67
VPS28-202ENST00000377348 TENM1Q9UKZ4 2725 aa10.84□□□□□ -0.67
VPS28-202ENST00000377348 CLDN34H7C241 214 aa10.84□□□□□ -0.67
VPS28-202ENST00000377348 LDLRAD4O15165 306 aa10.84□□□□□ -0.67
VPS28-202ENST00000377348 SOCS1O15524 211 aa10.84□□□□□ -0.67
VPS28-202ENST00000377348 IGHV3-7P01780 117 aa10.84□□□□□ -0.67
VPS28-202ENST00000377348 RNASE1P07998 156 aaKnown RBP10.84□□□□□ -0.67
VPS28-202ENST00000377348 CLEC2LP0C7M8 214 aa10.84□□□□□ -0.67
VPS28-202ENST00000377348 IER3P46695 156 aa10.84□□□□□ -0.67
VPS28-202ENST00000377348 ACTG1P63261 375 aa10.84□□□□□ -0.67
VPS28-202ENST00000377348 MXD1Q05195 221 aa10.84□□□□□ -0.67
VPS28-202ENST00000377348 BEND2Q8NDZ0 799 aa10.84□□□□□ -0.67
VPS28-202ENST00000377348 SSMEM1Q8WWF3 244 aa10.84□□□□□ -0.67
VPS28-202ENST00000377348 LEAP2Q969E1 77 aa10.84□□□□□ -0.67
VPS28-202ENST00000377348 YIPF6Q96EC8 236 aa10.84□□□□□ -0.67
VPS28-202ENST00000377348 KIRREL1Q96J84 757 aa10.84□□□□□ -0.67
VPS28-202ENST00000377348 KCTD7Q96MP8 289 aa10.84□□□□□ -0.67
VPS28-202ENST00000377348 NEDD4LQ96PU5 975 aa10.84□□□□□ -0.67
VPS28-202ENST00000377348 FAAP24Q9BTP7 215 aa10.84□□□□□ -0.67
VPS28-202ENST00000377348 IDI2-AS1Q9NZ38 188 aa10.84□□□□□ -0.67
VPS28-202ENST00000377348 NPIPB11E5RHQ5 1161 aa10.83□□□□□ -0.68
VPS28-202ENST00000377348 C15orf65H3BRN8 121 aa10.83□□□□□ -0.68
VPS28-202ENST00000377348 GLAP06280 429 aa10.83□□□□□ -0.68
VPS28-202ENST00000377348 JUNBP17275 347 aaPredicted RBP10.83□□□□□ -0.68
VPS28-202ENST00000377348 RCC1P18754 421 aaPredicted RBP10.83□□□□□ -0.68
VPS28-202ENST00000377348 BLVRBP30043 206 aaPredicted RBP10.83□□□□□ -0.68
VPS28-202ENST00000377348 SDC2P34741 201 aa10.83□□□□□ -0.68
VPS28-202ENST00000377348 TGFBR1P36897 503 aa10.83□□□□□ -0.68
VPS28-202ENST00000377348 VEGFCP49767 419 aa10.83□□□□□ -0.68
VPS28-202ENST00000377348 EFNB2P52799 333 aa10.83□□□□□ -0.68
VPS28-202ENST00000377348 OR52W1Q6IF63 320 aa10.83□□□□□ -0.68
VPS28-202ENST00000377348 FAM53AQ6NSI3 398 aaPredicted RBP10.83□□□□□ -0.68
VPS28-202ENST00000377348 C16orf87Q6PH81 154 aa10.83□□□□□ -0.68
VPS28-202ENST00000377348 C5orf24Q7Z6I8 188 aa10.83□□□□□ -0.68
VPS28-202ENST00000377348 GAPTQ8N292 157 aa10.83□□□□□ -0.68
VPS28-202ENST00000377348 OR4P4Q8NGL7 312 aa10.83□□□□□ -0.68
VPS28-202ENST00000377348 MRPL30Q8TCC3 161 aaKnown RBP10.83□□□□□ -0.68
VPS28-202ENST00000377348 ARL11Q969Q4 196 aa10.83□□□□□ -0.68
VPS28-202ENST00000377348 URM1Q9BTM9 101 aaKnown RBP10.83□□□□□ -0.68
VPS28-202ENST00000377348 LINC00574Q9H8X3 128 aa10.83□□□□□ -0.68
VPS28-202ENST00000377348 ZMAT3Q9HA38 289 aaKnown RBP10.83□□□□□ -0.68
VPS28-202ENST00000377348 LIN7BQ9HAP6 207 aa10.83□□□□□ -0.68
VPS28-202ENST00000377348 TRAPPC2LQ9UL33 140 aa10.83□□□□□ -0.68
VPS28-202ENST00000377348 POMT1Q9Y6A1 747 aa10.83□□□□□ -0.68
VPS28-202ENST00000377348 IGHV3-43A0A0B4J1X8 118 aa10.82□□□□□ -0.68
VPS28-202ENST00000377348 FOXI3A8MTJ6 420 aaPredicted RBP10.82□□□□□ -0.68
VPS28-202ENST00000377348 NOTOA8MTQ0 251 aa10.82□□□□□ -0.68
VPS28-202ENST00000377348 C12orf77C9JDV5 145 aa10.82□□□□□ -0.68
VPS28-202ENST00000377348 IGHV3-43DP0DP04 118 aa10.82□□□□□ -0.68
VPS28-202ENST00000377348 CFPP27918 469 aa10.82□□□□□ -0.68
VPS28-202ENST00000377348 TMEM50BP56557 158 aa10.82□□□□□ -0.68
VPS28-202ENST00000377348 LSM3P62310 102 aaKnown RBP10.82□□□□□ -0.68
VPS28-202ENST00000377348 SSX2Q16385 188 aa10.82□□□□□ -0.68
VPS28-202ENST00000377348 TPRA1Q86W33 373 aa10.82□□□□□ -0.68
VPS28-202ENST00000377348 FAM89BQ8N5H3 189 aa10.82□□□□□ -0.68
VPS28-202ENST00000377348 TMEM86BQ8N661 226 aa10.82□□□□□ -0.68
VPS28-202ENST00000377348 NDNFQ8TB73 568 aa10.82□□□□□ -0.68
VPS28-202ENST00000377348 SSX3Q99909 188 aa10.82□□□□□ -0.68
VPS28-202ENST00000377348 MEGF9Q9H1U4 602 aa10.82□□□□□ -0.68
VPS28-202ENST00000377348 DPAGT1Q9H3H5 408 aa10.82□□□□□ -0.68
VPS28-202ENST00000377348 PLEKHJ1Q9NW61 149 aa10.82□□□□□ -0.68
VPS28-202ENST00000377348 FBLN5Q9UBX5 448 aa10.82□□□□□ -0.68
VPS28-202ENST00000377348 DAPK2Q9UIK4 370 aa10.82□□□□□ -0.68
VPS28-202ENST00000377348 TBL2Q9Y4P3 447 aaKnown RBP10.82□□□□□ -0.68
VPS28-202ENST00000377348 HILPDAQ9Y5L2 63 aa10.82□□□□□ -0.68
VPS28-202ENST00000377348 A0A087X0M5 115 aa10.81□□□□□ -0.68
VPS28-202ENST00000377348 A0A1B0GX30 115 aa10.81□□□□□ -0.68
VPS28-202ENST00000377348 FAM181BA6NEQ2 426 aa10.81□□□□□ -0.68
VPS28-202ENST00000377348 H3BUI4 141 aa10.81□□□□□ -0.68
VPS28-202ENST00000377348 H3BUX3 64 aa10.81□□□□□ -0.68
VPS28-202ENST00000377348 AIREO43918 545 aa10.81□□□□□ -0.68
VPS28-202ENST00000377348 IGLV1-47P01700 117 aa10.81□□□□□ -0.68
VPS28-202ENST00000377348 GZMHP20718 246 aa10.81□□□□□ -0.68
VPS28-202ENST00000377348 CD34P28906 385 aa10.81□□□□□ -0.68
VPS28-202ENST00000377348 GNG10P50151 68 aa10.81□□□□□ -0.68
VPS28-202ENST00000377348 RAB13P51153 203 aa10.81□□□□□ -0.68
VPS28-202ENST00000377348 FAM189A2Q15884 450 aa10.81□□□□□ -0.68
VPS28-202ENST00000377348 LY6EQ16553 131 aa10.81□□□□□ -0.68
VPS28-202ENST00000377348 LRRC75BQ2VPJ9 315 aa10.81□□□□□ -0.68
VPS28-202ENST00000377348 MOGAT2Q3SYC2 334 aa10.81□□□□□ -0.68
VPS28-202ENST00000377348 SFXN4Q6P4A7 337 aa10.81□□□□□ -0.68
VPS28-202ENST00000377348 Q6ZPA2 131 aa10.81□□□□□ -0.68
VPS28-202ENST00000377348 PRR18Q8N4B5 295 aa10.81□□□□□ -0.68
VPS28-202ENST00000377348 OR1L1Q8NH94 360 aa10.81□□□□□ -0.68
VPS28-202ENST00000377348 GCDHQ92947 438 aaPredicted RBP10.81□□□□□ -0.68
VPS28-202ENST00000377348 MALSU1Q96EH3 234 aa10.81□□□□□ -0.68
VPS28-202ENST00000377348 ARHGAP5-AS1Q96IT6 56 aa10.81□□□□□ -0.68
VPS28-202ENST00000377348 HDHD3Q9BSH5 251 aaPredicted RBP10.81□□□□□ -0.68
VPS28-202ENST00000377348 PECRQ9BY49 303 aa10.81□□□□□ -0.68
VPS28-202ENST00000377348 RAB22AQ9UL26 194 aa10.81□□□□□ -0.68
VPS28-202ENST00000377348 A0A1W2PPE3 182 aa10.8□□□□□ -0.68
VPS28-202ENST00000377348 BTBD17A6NE02 478 aa10.8□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 56 ms