RNA–Protein interactions for RNA: ENST00000358808.6

CLIP1-202, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CLIP1, Length 5,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-202ENST00000358808 MAP6Q96JE9 813 aa8.98□□□□□ -0.97
CLIP1-202ENST00000358808 TINAGQ9UJW2 476 aa8.98□□□□□ -0.97
CLIP1-202ENST00000358808 ZFP30Q9Y2G7 519 aa8.98□□□□□ -0.97
CLIP1-202ENST00000358808 TRAV1-2A0A0B4J238 106 aa8.97□□□□□ -0.97
CLIP1-202ENST00000358808 FBLL1A6NHQ2 334 aaKnown RBP8.97□□□□□ -0.97
CLIP1-202ENST00000358808 HPXP02790 462 aa8.97□□□□□ -0.97
CLIP1-202ENST00000358808 ERVFRD-1P60508 538 aa8.97□□□□□ -0.97
CLIP1-202ENST00000358808 COTL1Q14019 142 aa8.97□□□□□ -0.97
CLIP1-202ENST00000358808 LINC00299Q6ZSB3 139 aa8.97□□□□□ -0.97
CLIP1-202ENST00000358808 AQP10Q96PS8 301 aa8.97□□□□□ -0.97
CLIP1-202ENST00000358808 DUSP21Q9H596 190 aa8.97□□□□□ -0.97
CLIP1-202ENST00000358808 LPAR3Q9UBY5 353 aa8.97□□□□□ -0.97
CLIP1-202ENST00000358808 TMEM189A5PLL7 270 aa8.97□□□□□ -0.97
CLIP1-202ENST00000358808 TRDCB7Z8K6 153 aa8.97□□□□□ -0.97
CLIP1-202ENST00000358808 ISLRO14498 428 aa8.97□□□□□ -0.97
CLIP1-202ENST00000358808 PPM1DO15297 605 aa8.97□□□□□ -0.97
CLIP1-202ENST00000358808 SRSF5Q13243 272 aaKnown RBP8.97□□□□□ -0.97
CLIP1-202ENST00000358808 CIRBPQ14011 172 aaKnown RBP8.97□□□□□ -0.97
CLIP1-202ENST00000358808 IL13RA2Q14627 380 aa8.97□□□□□ -0.97
CLIP1-202ENST00000358808 OR2C3Q8N628 320 aa8.97□□□□□ -0.97
CLIP1-202ENST00000358808 FAM131CQ96AQ9 280 aa8.97□□□□□ -0.97
CLIP1-202ENST00000358808 RPP25Q9BUL9 199 aaKnown RBP8.97□□□□□ -0.97
CLIP1-202ENST00000358808 CDCA4Q9BXL8 241 aa8.97□□□□□ -0.97
CLIP1-202ENST00000358808 CHST1O43916 411 aa8.97□□□□□ -0.97
CLIP1-202ENST00000358808 LGALS3P17931 250 aaKnown RBP8.97□□□□□ -0.97
CLIP1-202ENST00000358808 EVX1P49640 407 aa8.97□□□□□ -0.97
CLIP1-202ENST00000358808 COMPP49747 757 aaPredicted RBP8.97□□□□□ -0.97
CLIP1-202ENST00000358808 RPS4XP62701 263 aaKnown RBP8.97□□□□□ -0.97
CLIP1-202ENST00000358808 MMP25Q9NPA2 562 aa8.97□□□□□ -0.97
CLIP1-202ENST00000358808 COL4A1P02462 1669 aa8.97□□□□□ -0.97
CLIP1-202ENST00000358808 A0A0A6YYD5 115 aa8.97□□□□□ -0.97
CLIP1-202ENST00000358808 IGHV5-51A0A0C4DH38 117 aa8.97□□□□□ -0.97
CLIP1-202ENST00000358808 PTHLHP12272 177 aa8.97□□□□□ -0.97
CLIP1-202ENST00000358808 EPHA8P29322 1005 aaPredicted RBP8.97□□□□□ -0.97
CLIP1-202ENST00000358808 NUBP1P53384 320 aa8.97□□□□□ -0.97
CLIP1-202ENST00000358808 SIGLEC14Q08ET2 396 aa8.97□□□□□ -0.97
CLIP1-202ENST00000358808 LY6EQ16553 131 aa8.97□□□□□ -0.97
CLIP1-202ENST00000358808 AANATQ16613 207 aa8.97□□□□□ -0.97
CLIP1-202ENST00000358808 DIRC2Q96SL1 478 aa8.97□□□□□ -0.97
CLIP1-202ENST00000358808 SOSTQ9BQB4 213 aa8.97□□□□□ -0.97
CLIP1-202ENST00000358808 NUDT16L1Q9BRJ7 211 aaKnown RBP8.97□□□□□ -0.97
CLIP1-202ENST00000358808 IGHV1OR15-9A0A0B4J2B8 117 aa8.97□□□□□ -0.97
CLIP1-202ENST00000358808 CDIPTO14735 213 aa8.97□□□□□ -0.97
CLIP1-202ENST00000358808 MUC20Q8N307 709 aaPredicted RBP8.97□□□□□ -0.97
CLIP1-202ENST00000358808 ANAPC16Q96DE5 110 aa8.97□□□□□ -0.97
CLIP1-202ENST00000358808 GUCD1Q96NT3 240 aa8.97□□□□□ -0.97
CLIP1-202ENST00000358808 SLC25A37Q9NYZ2 338 aa8.97□□□□□ -0.97
CLIP1-202ENST00000358808 PIPOXQ9P0Z9 390 aa8.97□□□□□ -0.97
CLIP1-202ENST00000358808 RAB32Q13637 225 aa8.96□□□□□ -0.97
CLIP1-202ENST00000358808 SLC35B3Q9H1N7 401 aa8.96□□□□□ -0.97
CLIP1-202ENST00000358808 TNFRSF12AQ9NP84 129 aa8.96□□□□□ -0.97
CLIP1-202ENST00000358808 PPIAL4EA0A075B759 164 aa8.96□□□□□ -0.97
CLIP1-202ENST00000358808 PPIAL4DF5H284 164 aa8.96□□□□□ -0.97
CLIP1-202ENST00000358808 CD74P04233 296 aa8.96□□□□□ -0.97
CLIP1-202ENST00000358808 PPIAL4FP0DN26 164 aa8.96□□□□□ -0.97
CLIP1-202ENST00000358808 MMP15P51511 669 aa8.96□□□□□ -0.97
CLIP1-202ENST00000358808 ZNF680Q8NEM1 530 aa8.96□□□□□ -0.97
CLIP1-202ENST00000358808 LINC00615Q96LM1 132 aaPredicted RBP8.96□□□□□ -0.97
CLIP1-202ENST00000358808 PPIAL4AQ9Y536 164 aa8.96□□□□□ -0.97
CLIP1-202ENST00000358808 ASB1Q9Y576 335 aa8.96□□□□□ -0.97
CLIP1-202ENST00000358808 CDX1P47902 265 aaPredicted RBP8.96□□□□□ -0.98
CLIP1-202ENST00000358808 ZFP36L2P47974 494 aaKnown RBP8.96□□□□□ -0.98
CLIP1-202ENST00000358808 HLA-DRB3P79483 266 aa8.96□□□□□ -0.98
CLIP1-202ENST00000358808 SSX8Q7RTT4 187 aa8.96□□□□□ -0.98
CLIP1-202ENST00000358808 CENPVQ7Z7K6 275 aaPredicted RBP8.96□□□□□ -0.98
CLIP1-202ENST00000358808 GPR35Q9HC97 309 aa8.96□□□□□ -0.98
CLIP1-202ENST00000358808 OR51B2Q9Y5P1 312 aa8.96□□□□□ -0.98
CLIP1-202ENST00000358808 TUBGCP6Q96RT7 1819 aa8.96□□□□□ -0.98
CLIP1-202ENST00000358808 IGHV1OR21-1A0A087WYE8 117 aa8.96□□□□□ -0.98
CLIP1-202ENST00000358808 A0A1W2PPE3 182 aa8.96□□□□□ -0.98
CLIP1-202ENST00000358808 CA2P00918 260 aa8.96□□□□□ -0.98
CLIP1-202ENST00000358808 UQCC3Q6UW78 93 aa8.96□□□□□ -0.98
CLIP1-202ENST00000358808 OR1L8Q8NGR8 309 aa8.96□□□□□ -0.98
CLIP1-202ENST00000358808 MYEOVQ96EZ4 313 aa8.96□□□□□ -0.98
CLIP1-202ENST00000358808 CNRIP1Q96F85 164 aaPredicted RBP8.96□□□□□ -0.98
CLIP1-202ENST00000358808 TSPAN32Q96QS1 320 aa8.96□□□□□ -0.98
CLIP1-202ENST00000358808 FOXC2Q99958 501 aa8.96□□□□□ -0.98
CLIP1-202ENST00000358808 GP1BAP07359 652 aa8.95□□□□□ -0.98
CLIP1-202ENST00000358808 ADRA2AP08913 450 aa8.95□□□□□ -0.98
CLIP1-202ENST00000358808 C1orf185Q5T7R7 199 aa8.95□□□□□ -0.98
CLIP1-202ENST00000358808 LDLRAD3Q86YD5 345 aa8.95□□□□□ -0.98
CLIP1-202ENST00000358808 CALHM1Q8IU99 346 aa8.95□□□□□ -0.98
CLIP1-202ENST00000358808 FAM24BQ8N5W8 94 aa8.95□□□□□ -0.98
CLIP1-202ENST00000358808 OR8G5Q8NG78 346 aa8.95□□□□□ -0.98
CLIP1-202ENST00000358808 GPR61Q9BZJ8 451 aa8.95□□□□□ -0.98
CLIP1-202ENST00000358808 GZMKP49863 264 aa8.95□□□□□ -0.98
CLIP1-202ENST00000358808 IL24Q13007 206 aa8.95□□□□□ -0.98
CLIP1-202ENST00000358808 GLDNQ6ZMI3 551 aaPredicted RBP8.95□□□□□ -0.98
CLIP1-202ENST00000358808 C16orf47Q6ZP98 133 aaPredicted RBP8.95□□□□□ -0.98
CLIP1-202ENST00000358808 OR2T10Q8NGZ9 312 aa8.95□□□□□ -0.98
CLIP1-202ENST00000358808 OR4A5Q8NH83 315 aa8.95□□□□□ -0.98
CLIP1-202ENST00000358808 STARD10Q9Y365 291 aa8.95□□□□□ -0.98
CLIP1-202ENST00000358808 NPFFO15130 113 aa8.95□□□□□ -0.98
CLIP1-202ENST00000358808 POLR2GP62487 172 aaKnown RBP eCLIP8.95□□□□□ -0.98
CLIP1-202ENST00000358808 PPP1R1AQ13522 171 aa8.95□□□□□ -0.98
CLIP1-202ENST00000358808 DNLZQ5SXM8 178 aa8.95□□□□□ -0.98
CLIP1-202ENST00000358808 FAM27D1Q5T7N8 215 aa8.95□□□□□ -0.98
CLIP1-202ENST00000358808 NSUN5P2Q63ZY6 315 aa8.95□□□□□ -0.98
CLIP1-202ENST00000358808 PWWP2BQ6NUJ5 590 aa8.95□□□□□ -0.98
CLIP1-202ENST00000358808 TP53I13Q8NBR0 393 aaPredicted RBP8.95□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms