RNA–Protein interactions for RNA: ENST00000356922.5

LIG4-201, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,096 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-201ENST00000356922 PALMDQ9NP74 551 aa3.3□□□□□ -1.88
LIG4-201ENST00000356922 HIF1ANQ9NWT6 349 aa3.3□□□□□ -1.88
LIG4-201ENST00000356922 EXTL2Q9UBQ6 330 aa3.3□□□□□ -1.88
LIG4-201ENST00000356922 ADAM30Q9UKF2 790 aa3.3□□□□□ -1.88
LIG4-201ENST00000356922 MEIKINA0A087WXM9 373 aa3.3□□□□□ -1.88
LIG4-201ENST00000356922 LINC00854A0A1B0GVQ3 168 aa3.3□□□□□ -1.88
LIG4-201ENST00000356922 A0A1W2PPE3 182 aa3.3□□□□□ -1.88
LIG4-201ENST00000356922 MCRIP1C9JLW8 97 aa3.3□□□□□ -1.88
LIG4-201ENST00000356922 C15orf65H3BRN8 121 aa3.3□□□□□ -1.88
LIG4-201ENST00000356922 HSPA12AO43301 675 aa3.3□□□□□ -1.88
LIG4-201ENST00000356922 B3GALNT1O75752 331 aa3.3□□□□□ -1.88
LIG4-201ENST00000356922 TSPAN9O75954 239 aa3.3□□□□□ -1.88
LIG4-201ENST00000356922 APOA1P02647 267 aa3.3□□□□□ -1.88
LIG4-201ENST00000356922 INHBBP09529 407 aa3.3□□□□□ -1.88
LIG4-201ENST00000356922 MMP9P14780 707 aa3.3□□□□□ -1.88
LIG4-201ENST00000356922 RAB6AP20340 208 aa3.3□□□□□ -1.88
LIG4-201ENST00000356922 CPT2P23786 658 aa3.3□□□□□ -1.88
LIG4-201ENST00000356922 SRP14P37108 136 aaKnown RBP3.3□□□□□ -1.88
LIG4-201ENST00000356922 RPL31P62899 125 aaKnown RBP3.3□□□□□ -1.88
LIG4-201ENST00000356922 DGCR2P98153 550 aa3.3□□□□□ -1.88
LIG4-201ENST00000356922 KLRD1Q13241 179 aa3.3□□□□□ -1.88
LIG4-201ENST00000356922 BAK1Q16611 211 aa3.3□□□□□ -1.88
LIG4-201ENST00000356922 FBLN7Q53RD9 439 aa3.3□□□□□ -1.88
LIG4-201ENST00000356922 KLF17Q5JT82 389 aaPredicted RBP3.3□□□□□ -1.88
LIG4-201ENST00000356922 UBE2NLQ5JXB2 153 aa3.3□□□□□ -1.88
LIG4-201ENST00000356922 HCP5Q6MZN7 132 aa3.3□□□□□ -1.88
LIG4-201ENST00000356922 BTNL3Q6UXE8 466 aa3.3□□□□□ -1.88
LIG4-201ENST00000356922 SPNS3Q6ZMD2 512 aa3.3□□□□□ -1.88
LIG4-201ENST00000356922 ZNF782Q6ZMW2 699 aaPredicted RBP3.3□□□□□ -1.88
LIG4-201ENST00000356922 CROCCP3Q8IVE0 287 aa3.3□□□□□ -1.88
LIG4-201ENST00000356922 MFSD4AQ8N468 514 aa3.3□□□□□ -1.88
LIG4-201ENST00000356922 OR4D10Q8NGI6 311 aa3.3□□□□□ -1.88
LIG4-201ENST00000356922 OR1L1Q8NH94 360 aa3.3□□□□□ -1.88
LIG4-201ENST00000356922 C22orf15Q8WYQ4 148 aa3.3□□□□□ -1.88
LIG4-201ENST00000356922 TNFRSF14Q92956 283 aa3.3□□□□□ -1.88
LIG4-201ENST00000356922 DIRAS2Q96HU8 199 aa3.3□□□□□ -1.88
LIG4-201ENST00000356922 SIRT7Q9NRC8 400 aa3.3□□□□□ -1.88
LIG4-201ENST00000356922 ONECUT1Q9UBC0 465 aa3.3□□□□□ -1.88
LIG4-201ENST00000356922 MIOXQ9UGB7 285 aa3.3□□□□□ -1.88
LIG4-201ENST00000356922 C2CD3Q4AC94 2353 aa3.3□□□□□ -1.88
LIG4-201ENST00000356922 IGHV3-43A0A0B4J1X8 118 aa3.3□□□□□ -1.88
LIG4-201ENST00000356922 KIR2DS1A0A191URI9 304 aa3.3□□□□□ -1.88
LIG4-201ENST00000356922 hCG_1809904A0A1W2PP81 198 aa3.3□□□□□ -1.88
LIG4-201ENST00000356922 A0A1W2PPE2 198 aa3.3□□□□□ -1.88
LIG4-201ENST00000356922 A0A1W2PR64 198 aa3.3□□□□□ -1.88
LIG4-201ENST00000356922 A0A1W2PRD5 423 aa3.3□□□□□ -1.88
LIG4-201ENST00000356922 A0A1W2PRF3 423 aa3.3□□□□□ -1.88
LIG4-201ENST00000356922 A0A1W2PRM7 423 aa3.3□□□□□ -1.88
LIG4-201ENST00000356922 A0A1W2PRV1 198 aa3.3□□□□□ -1.88
LIG4-201ENST00000356922 ODAMA1E959 279 aa3.3□□□□□ -1.88
LIG4-201ENST00000356922 C12orf77C9JDV5 145 aa3.3□□□□□ -1.88
LIG4-201ENST00000356922 H3BUI4 141 aa3.3□□□□□ -1.88
LIG4-201ENST00000356922 LY6G6DO95868 133 aa3.3□□□□□ -1.88
LIG4-201ENST00000356922 IGHV3-43DP0DP04 118 aa3.3□□□□□ -1.88
LIG4-201ENST00000356922 SLC25A16P16260 332 aa3.3□□□□□ -1.88
LIG4-201ENST00000356922 P2RX3P56373 397 aa3.3□□□□□ -1.88
LIG4-201ENST00000356922 DIAPH2-AS1Q14236 149 aa3.3□□□□□ -1.88
LIG4-201ENST00000356922 GNMTQ14749 295 aa3.3□□□□□ -1.88
LIG4-201ENST00000356922 MPV17LQ2QL34 196 aa3.3□□□□□ -1.88
LIG4-201ENST00000356922 HACD4Q5VWC8 232 aa3.3□□□□□ -1.88
LIG4-201ENST00000356922 FAAP20Q6NZ36 180 aa3.3□□□□□ -1.88
LIG4-201ENST00000356922 OR52I2Q8NH67 350 aa3.3□□□□□ -1.88
LIG4-201ENST00000356922 KCTD12Q96CX2 325 aaKnown RBP3.3□□□□□ -1.88
LIG4-201ENST00000356922 S100A16Q96FQ6 103 aaKnown RBP3.3□□□□□ -1.88
LIG4-201ENST00000356922 C1orf159Q96HA4 380 aa3.3□□□□□ -1.88
LIG4-201ENST00000356922 MED30Q96HR3 178 aa3.3□□□□□ -1.88
LIG4-201ENST00000356922 AJUBAQ96IF1 538 aa3.3□□□□□ -1.88
LIG4-201ENST00000356922 ST6GALNAC5Q9BVH7 336 aa3.3□□□□□ -1.88
LIG4-201ENST00000356922 TMPRSS13Q9BYE2 586 aa3.3□□□□□ -1.88
LIG4-201ENST00000356922 MMP27Q9H306 513 aa3.3□□□□□ -1.88
LIG4-201ENST00000356922 KCNIP1Q9NZI2 227 aa3.3□□□□□ -1.88
LIG4-201ENST00000356922 TRAPPC2LQ9UL33 140 aa3.3□□□□□ -1.88
LIG4-201ENST00000356922 LOC105371242A0A075B767 164 aa3.29□□□□□ -1.88
LIG4-201ENST00000356922 PPIAL4CA0A0B4J2A2 164 aa3.29□□□□□ -1.88
LIG4-201ENST00000356922 A0A1W2PPH5 198 aa3.29□□□□□ -1.88
LIG4-201ENST00000356922 FUOMA2VDF0 154 aa3.29□□□□□ -1.88
LIG4-201ENST00000356922 J3QRK9 145 aa3.29□□□□□ -1.88
LIG4-201ENST00000356922 MGST3O14880 152 aa3.29□□□□□ -1.88
LIG4-201ENST00000356922 PROP1O75360 226 aa3.29□□□□□ -1.88
LIG4-201ENST00000356922 CSN2P05814 226 aa3.29□□□□□ -1.88
LIG4-201ENST00000356922 MSMBP08118 114 aa3.29□□□□□ -1.88
LIG4-201ENST00000356922 MELTFP08582 738 aa3.29□□□□□ -1.88
LIG4-201ENST00000356922 PPIAL4GP0DN37 164 aa3.29□□□□□ -1.88
LIG4-201ENST00000356922 IGHV4-38-2P0DP08 117 aa3.29□□□□□ -1.88
LIG4-201ENST00000356922 RFX2P48378 723 aa3.29□□□□□ -1.88
LIG4-201ENST00000356922 EIF2B2P49770 351 aaKnown RBP3.29□□□□□ -1.88
LIG4-201ENST00000356922 LOXL3P58215 753 aa3.29□□□□□ -1.88
LIG4-201ENST00000356922 TMEM69Q5SWH9 247 aa3.29□□□□□ -1.88
LIG4-201ENST00000356922 OR56B1Q8NGI3 324 aa3.29□□□□□ -1.88
LIG4-201ENST00000356922 IL1F10Q8WWZ1 152 aa3.29□□□□□ -1.88
LIG4-201ENST00000356922 RAB40AQ8WXH6 277 aa3.29□□□□□ -1.88
LIG4-201ENST00000356922 TBX15Q96SF7 602 aa3.29□□□□□ -1.88
LIG4-201ENST00000356922 MRI1Q9BV20 369 aa3.29□□□□□ -1.88
LIG4-201ENST00000356922 RHOFQ9HBH0 211 aa3.29□□□□□ -1.88
LIG4-201ENST00000356922 MBNL3Q9NUK0 354 aaKnown RBP3.29□□□□□ -1.88
LIG4-201ENST00000356922 PTTG2Q9NZH5 202 aa3.29□□□□□ -1.88
LIG4-201ENST00000356922 HSF4Q9ULV5 492 aa3.29□□□□□ -1.88
LIG4-201ENST00000356922 ETV7Q9Y603 341 aa3.29□□□□□ -1.88
LIG4-201ENST00000356922 RNASEK-C17orf49H0YIS7 233 aa3.29□□□□□ -1.88
LIG4-201ENST00000356922 SLC31A2O15432 143 aa3.29□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 59.8 ms