RNA–Protein interactions for RNA: ENST00000341423.9

HMGB1-203, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGB1, Length 5,485 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-203ENST00000341423 PSG6Q00889 435 aa7.17□□□□□ -1.26
HMGB1-203ENST00000341423 WDR25Q64LD2 544 aaPredicted RBP7.17□□□□□ -1.26
HMGB1-203ENST00000341423 OR10P1Q8NGE3 313 aa7.17□□□□□ -1.26
HMGB1-203ENST00000341423 DUX3Q96PT4 197 aa7.17□□□□□ -1.26
HMGB1-203ENST00000341423 NMNAT2Q9BZQ4 307 aa7.17□□□□□ -1.26
HMGB1-203ENST00000341423 TLN1Q9Y490 2541 aaKnown RBP7.17□□□□□ -1.26
HMGB1-203ENST00000341423 NUDT3O95989 172 aa7.17□□□□□ -1.26
HMGB1-203ENST00000341423 PEBP1P30086 187 aaKnown RBP7.17□□□□□ -1.26
HMGB1-203ENST00000341423 CCL18P55774 89 aa7.17□□□□□ -1.26
HMGB1-203ENST00000341423 HSD17B13Q7Z5P4 300 aaPredicted RBP7.17□□□□□ -1.26
HMGB1-203ENST00000341423 FAM219AQ8IW50 185 aa7.17□□□□□ -1.26
HMGB1-203ENST00000341423 TCTEX1D1Q8N7M0 179 aa7.17□□□□□ -1.26
HMGB1-203ENST00000341423 OR1N2Q8NGR9 330 aa7.17□□□□□ -1.26
HMGB1-203ENST00000341423 ZNF75AQ96N20 296 aa7.17□□□□□ -1.26
HMGB1-203ENST00000341423 EBF4Q9BQW3 602 aa7.17□□□□□ -1.26
HMGB1-203ENST00000341423 BABAM2Q9NXR7 383 aa7.17□□□□□ -1.26
HMGB1-203ENST00000341423 FN1P02751 2386 aaKnown RBP7.17□□□□□ -1.26
HMGB1-203ENST00000341423 SELENOFO60613 162 aa7.17□□□□□ -1.26
HMGB1-203ENST00000341423 HIST1H1CP16403 213 aaKnown RBP7.17□□□□□ -1.26
HMGB1-203ENST00000341423 HNRNPFP52597 415 aaKnown RBP7.17□□□□□ -1.26
HMGB1-203ENST00000341423 CLDN18P56856 261 aa7.17□□□□□ -1.26
HMGB1-203ENST00000341423 DAD1P61803 113 aa7.17□□□□□ -1.26
HMGB1-203ENST00000341423 LINC00303Q3SY05 128 aa7.17□□□□□ -1.26
HMGB1-203ENST00000341423 SLC29A1Q99808 456 aa7.17□□□□□ -1.26
HMGB1-203ENST00000341423 ASCL2Q99929 193 aa7.17□□□□□ -1.26
HMGB1-203ENST00000341423 RNF122Q9H9V4 155 aa7.17□□□□□ -1.26
HMGB1-203ENST00000341423 FAM206AQ9NX38 181 aa7.17□□□□□ -1.26
HMGB1-203ENST00000341423 STRAPQ9Y3F4 350 aaKnown RBP7.17□□□□□ -1.26
HMGB1-203ENST00000341423 LOXHD1Q8IVV2 1947 aa7.17□□□□□ -1.26
HMGB1-203ENST00000341423 A0A087WX48 190 aa7.17□□□□□ -1.26
HMGB1-203ENST00000341423 TRGV4A0A0C4DH28 118 aa7.17□□□□□ -1.26
HMGB1-203ENST00000341423 ORC5O43913 435 aa7.17□□□□□ -1.26
HMGB1-203ENST00000341423 TSPAN2O60636 221 aa7.17□□□□□ -1.26
HMGB1-203ENST00000341423 TOXO94900 526 aa7.17□□□□□ -1.26
HMGB1-203ENST00000341423 GK2Q14410 553 aaPredicted RBP7.17□□□□□ -1.26
HMGB1-203ENST00000341423 PHLDA2Q53GA4 152 aa7.17□□□□□ -1.26
HMGB1-203ENST00000341423 VMO1Q7Z5L0 202 aa7.17□□□□□ -1.26
HMGB1-203ENST00000341423 ADGRE4PQ86SQ3 457 aa7.17□□□□□ -1.26
HMGB1-203ENST00000341423 SLC25A46Q96AG3 418 aa7.17□□□□□ -1.26
HMGB1-203ENST00000341423 EAF1Q96JC9 268 aaPredicted RBP7.17□□□□□ -1.26
HMGB1-203ENST00000341423 HYLS1Q96M11 299 aa7.17□□□□□ -1.26
HMGB1-203ENST00000341423 DPCDQ9BVM2 203 aaPredicted RBP7.17□□□□□ -1.26
HMGB1-203ENST00000341423 GSX2Q9BZM3 304 aa7.17□□□□□ -1.26
HMGB1-203ENST00000341423 MED20Q9H944 212 aa7.17□□□□□ -1.26
HMGB1-203ENST00000341423 FOXA2Q9Y261 457 aaPredicted RBP7.17□□□□□ -1.26
HMGB1-203ENST00000341423 ASPDHA6ND91 283 aa7.16□□□□□ -1.26
HMGB1-203ENST00000341423 ACSM4P0C7M7 580 aa7.16□□□□□ -1.26
HMGB1-203ENST00000341423 PTBP1P26599 531 aaKnown RBP eCLIP7.16□□□□□ -1.26
HMGB1-203ENST00000341423 SLC17A1Q14916 467 aa7.16□□□□□ -1.26
HMGB1-203ENST00000341423 C1orf122Q6ZSJ8 110 aa7.16□□□□□ -1.26
HMGB1-203ENST00000341423 ZNF826PQ6ZT77 177 aa7.16□□□□□ -1.26
HMGB1-203ENST00000341423 OR10A7Q8NGE5 316 aa7.16□□□□□ -1.26
HMGB1-203ENST00000341423 NUBP2Q9Y5Y2 271 aa7.16□□□□□ -1.26
HMGB1-203ENST00000341423 GREM1O60565 184 aa7.16□□□□□ -1.26
HMGB1-203ENST00000341423 LY6G6CO95867 125 aa7.16□□□□□ -1.26
HMGB1-203ENST00000341423 SOD1P00441 154 aa7.16□□□□□ -1.26
HMGB1-203ENST00000341423 CRYBB2P43320 205 aa7.16□□□□□ -1.26
HMGB1-203ENST00000341423 PSG4Q00888 419 aa7.16□□□□□ -1.26
HMGB1-203ENST00000341423 C20orf196Q8IYI0 205 aa7.16□□□□□ -1.26
HMGB1-203ENST00000341423 CRIPAKQ8N1N5 446 aa7.16□□□□□ -1.26
HMGB1-203ENST00000341423 APCDD1LQ8NCL9 501 aa7.16□□□□□ -1.26
HMGB1-203ENST00000341423 C17orf50Q8WW18 174 aa7.16□□□□□ -1.26
HMGB1-203ENST00000341423 MALSU1Q96EH3 234 aa7.16□□□□□ -1.26
HMGB1-203ENST00000341423 OR2M2Q96R28 347 aa7.16□□□□□ -1.26
HMGB1-203ENST00000341423 EXOGQ9Y2C4 368 aaKnown RBP7.16□□□□□ -1.26
HMGB1-203ENST00000341423 ANKRD31Q8N7Z5 1873 aa7.16□□□□□ -1.26
HMGB1-203ENST00000341423 IGHV1-69DA0A0B4J2H0 117 aa7.16□□□□□ -1.26
HMGB1-203ENST00000341423 IGHV1-69P01742 117 aa7.16□□□□□ -1.26
HMGB1-203ENST00000341423 MMP7P09237 267 aaPredicted RBP7.16□□□□□ -1.26
HMGB1-203ENST00000341423 MGMTP16455 207 aa7.16□□□□□ -1.26
HMGB1-203ENST00000341423 EVX1P49640 407 aa7.16□□□□□ -1.26
HMGB1-203ENST00000341423 DHRS2Q13268 280 aa7.16□□□□□ -1.26
HMGB1-203ENST00000341423 HERPUD1Q15011 391 aa7.16□□□□□ -1.26
HMGB1-203ENST00000341423 PRR31Q5SQ13 230 aa7.16□□□□□ -1.26
HMGB1-203ENST00000341423 NANOGP1Q8N7R0 232 aa7.16□□□□□ -1.26
HMGB1-203ENST00000341423 ORAI1Q96D31 301 aa7.16□□□□□ -1.26
HMGB1-203ENST00000341423 ARV1Q9H2C2 271 aa7.16□□□□□ -1.26
HMGB1-203ENST00000341423 BIN3Q9NQY0 253 aa7.16□□□□□ -1.26
HMGB1-203ENST00000341423 OR1A1Q9P1Q5 309 aa7.16□□□□□ -1.26
HMGB1-203ENST00000341423 HRKO00198 91 aa7.16□□□□□ -1.26
HMGB1-203ENST00000341423 FABP7O15540 132 aa7.16□□□□□ -1.26
HMGB1-203ENST00000341423 S100PP25815 95 aa7.16□□□□□ -1.26
HMGB1-203ENST00000341423 GDNFP39905 211 aa7.16□□□□□ -1.26
HMGB1-203ENST00000341423 DBX2Q6ZNG2 339 aa7.16□□□□□ -1.26
HMGB1-203ENST00000341423 C16orf82Q7Z2V1 217 aa7.16□□□□□ -1.26
HMGB1-203ENST00000341423 ZNF683Q8IZ20 524 aa7.16□□□□□ -1.26
HMGB1-203ENST00000341423 GBGT1Q8N5D6 347 aa7.16□□□□□ -1.26
HMGB1-203ENST00000341423 TMED6Q8WW62 240 aa7.16□□□□□ -1.26
HMGB1-203ENST00000341423 SMCO4Q9NRQ5 59 aa7.16□□□□□ -1.26
HMGB1-203ENST00000341423 VAPAQ9P0L0 249 aa7.16□□□□□ -1.26
HMGB1-203ENST00000341423 SULT1A2P50226 295 aa7.15□□□□□ -1.26
HMGB1-203ENST00000341423 ODF1Q14990 250 aa7.15□□□□□ -1.26
HMGB1-203ENST00000341423 TMEM78Q5T7P6 136 aa7.15□□□□□ -1.26
HMGB1-203ENST00000341423 RHOXF1Q8NHV9 184 aa7.15□□□□□ -1.26
HMGB1-203ENST00000341423 TMEM167AQ8TBQ9 72 aa7.15□□□□□ -1.26
HMGB1-203ENST00000341423 SCARB1Q8WTV0 552 aa7.15□□□□□ -1.26
HMGB1-203ENST00000341423 WDR34Q96EX3 536 aa7.15□□□□□ -1.26
HMGB1-203ENST00000341423 SPACA5Q96QH8 159 aa7.15□□□□□ -1.26
HMGB1-203ENST00000341423 TBL2Q9Y4P3 447 aaKnown RBP7.15□□□□□ -1.26
HMGB1-203ENST00000341423 A0A1W2PPE3 182 aa7.15□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 75.7 ms