RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 FAM240AA0A1B0GVK7 77 aa1.88□□□□□ -2.11
HMGB1-201ENST00000326004 SLC5A10A0PJK1 596 aa1.88□□□□□ -2.11
HMGB1-201ENST00000326004 FABP12A6NFH5 140 aa1.88□□□□□ -2.11
HMGB1-201ENST00000326004 COLCA2A8K830 154 aa1.88□□□□□ -2.11
HMGB1-201ENST00000326004 GOLGA8KD6RF30 607 aa1.88□□□□□ -2.11
HMGB1-201ENST00000326004 CLDN34H7C241 214 aa1.88□□□□□ -2.11
HMGB1-201ENST00000326004 DNASE2O00115 360 aaPredicted RBP1.88□□□□□ -2.11
HMGB1-201ENST00000326004 ZNF593O00488 134 aaPredicted RBP1.88□□□□□ -2.11
HMGB1-201ENST00000326004 RAD1O60671 282 aa1.88□□□□□ -2.11
HMGB1-201ENST00000326004 FOXH1O75593 365 aa1.88□□□□□ -2.11
HMGB1-201ENST00000326004 UPK1BO75841 260 aa1.88□□□□□ -2.11
HMGB1-201ENST00000326004 MPZL1O95297 269 aa1.88□□□□□ -2.11
HMGB1-201ENST00000326004 PTHP01270 115 aa1.88□□□□□ -2.11
HMGB1-201ENST00000326004 HLA-DQA1P01909 254 aa1.88□□□□□ -2.11
HMGB1-201ENST00000326004 SNRPAP09012 282 aaKnown RBP1.88□□□□□ -2.11
HMGB1-201ENST00000326004 GIMD1P0DJR0 217 aa1.88□□□□□ -2.11
HMGB1-201ENST00000326004 HTR1DP28221 377 aa1.88□□□□□ -2.11
HMGB1-201ENST00000326004 OPRK1P41145 380 aa1.88□□□□□ -2.11
HMGB1-201ENST00000326004 CXCL12P48061 93 aa1.88□□□□□ -2.11
HMGB1-201ENST00000326004 ERFP50548 548 aa1.88□□□□□ -2.11
HMGB1-201ENST00000326004 CDKN2DP55273 166 aa1.88□□□□□ -2.11
HMGB1-201ENST00000326004 MTPNP58546 118 aa1.88□□□□□ -2.11
HMGB1-201ENST00000326004 TAS2R46P59540 309 aa1.88□□□□□ -2.11
HMGB1-201ENST00000326004 VBP1P61758 197 aa1.88□□□□□ -2.11
HMGB1-201ENST00000326004 RELAQ04206 551 aa1.88□□□□□ -2.11
HMGB1-201ENST00000326004 STX4Q12846 297 aa1.88□□□□□ -2.11
HMGB1-201ENST00000326004 CASP8Q14790 479 aa1.88□□□□□ -2.11
HMGB1-201ENST00000326004 MAPRE2Q15555 327 aa1.88□□□□□ -2.11
HMGB1-201ENST00000326004 PRSS8Q16651 343 aa1.88□□□□□ -2.11
HMGB1-201ENST00000326004 BSXQ3C1V8 233 aa1.88□□□□□ -2.11
HMGB1-201ENST00000326004 STEAP4Q687X5 459 aa1.88□□□□□ -2.11
HMGB1-201ENST00000326004 NEGR1Q7Z3B1 354 aa1.88□□□□□ -2.11
HMGB1-201ENST00000326004 HMGN2P46Q86SG4 172 aa1.88□□□□□ -2.11
HMGB1-201ENST00000326004 LRRC6Q86X45 466 aa1.88□□□□□ -2.11
HMGB1-201ENST00000326004 CRLF3Q8IUI8 442 aa1.88□□□□□ -2.11
HMGB1-201ENST00000326004 NKAIN4Q8IVV8 208 aa1.88□□□□□ -2.11
HMGB1-201ENST00000326004 LRRC34Q8IZ02 419 aa1.88□□□□□ -2.11
HMGB1-201ENST00000326004 LYPD1Q8N2G4 141 aa1.88□□□□□ -2.11
HMGB1-201ENST00000326004 CCNYL1Q8N7R7 359 aa1.88□□□□□ -2.11
HMGB1-201ENST00000326004 UBAC2Q8NBM4 344 aa1.88□□□□□ -2.11
HMGB1-201ENST00000326004 ZNF738Q8NE65 137 aa1.88□□□□□ -2.11
HMGB1-201ENST00000326004 OR4K5Q8NGD3 323 aa1.88□□□□□ -2.11
HMGB1-201ENST00000326004 ZFAND1Q8TCF1 268 aa1.88□□□□□ -2.11
HMGB1-201ENST00000326004 DOK4Q8TEW6 326 aa1.88□□□□□ -2.11
HMGB1-201ENST00000326004 ING5Q8WYH8 240 aa1.88□□□□□ -2.11
HMGB1-201ENST00000326004 ESR2Q92731 530 aa1.88□□□□□ -2.11
HMGB1-201ENST00000326004 RORBQ92753 470 aa1.88□□□□□ -2.11
HMGB1-201ENST00000326004 L3HYPDHQ96EM0 354 aa1.88□□□□□ -2.11
HMGB1-201ENST00000326004 PPP1R36Q96LQ0 422 aa1.88□□□□□ -2.11
HMGB1-201ENST00000326004 ZNF488Q96MN9 340 aa1.88□□□□□ -2.11
HMGB1-201ENST00000326004 DOK1Q99704 481 aa1.88□□□□□ -2.11
HMGB1-201ENST00000326004 HSD17B10Q99714 261 aaKnown RBP1.88□□□□□ -2.11
HMGB1-201ENST00000326004 PDCD1LG2Q9BQ51 273 aa1.88□□□□□ -2.11
HMGB1-201ENST00000326004 SULT4A1Q9BR01 284 aa1.88□□□□□ -2.11
HMGB1-201ENST00000326004 ZNF251Q9BRH9 671 aa1.88□□□□□ -2.11
HMGB1-201ENST00000326004 C7orf50Q9BRJ6 194 aaKnown RBP1.88□□□□□ -2.11
HMGB1-201ENST00000326004 SAMD10Q9BYL1 202 aa1.88□□□□□ -2.11
HMGB1-201ENST00000326004 COA1Q9GZY4 146 aa1.88□□□□□ -2.11
HMGB1-201ENST00000326004 SLC38A1Q9H2H9 487 aa1.88□□□□□ -2.11
HMGB1-201ENST00000326004 OR52D1Q9H346 318 aa1.88□□□□□ -2.11
HMGB1-201ENST00000326004 PRORYQ9H606 182 aa1.88□□□□□ -2.11
HMGB1-201ENST00000326004 WDR55Q9H6Y2 383 aaPredicted RBP1.88□□□□□ -2.11
HMGB1-201ENST00000326004 ZNF442Q9H7R0 627 aa1.88□□□□□ -2.11
HMGB1-201ENST00000326004 TMEM27Q9HBJ8 222 aa1.88□□□□□ -2.11
HMGB1-201ENST00000326004 FAIMQ9NVQ4 179 aa1.88□□□□□ -2.11
HMGB1-201ENST00000326004 NLE1Q9NVX2 485 aaPredicted RBP1.88□□□□□ -2.11
HMGB1-201ENST00000326004 DDIT4Q9NX09 232 aa1.88□□□□□ -2.11
HMGB1-201ENST00000326004 PSMD13Q9UNM6 376 aa1.88□□□□□ -2.11
HMGB1-201ENST00000326004 AP3M1Q9Y2T2 418 aa1.88□□□□□ -2.11
HMGB1-201ENST00000326004 SNX24Q9Y343 169 aa1.88□□□□□ -2.11
HMGB1-201ENST00000326004 TRIOO75962 3097 aa1.87□□□□□ -2.11
HMGB1-201ENST00000326004 LOC400499M0QZD8 3231 aa1.87□□□□□ -2.11
HMGB1-201ENST00000326004 SVILO95425 2214 aa1.87□□□□□ -2.11
HMGB1-201ENST00000326004 SHROOM3Q8TF72 1996 aa1.87□□□□□ -2.11
HMGB1-201ENST00000326004 A0A1B0GTI1 187 aa1.87□□□□□ -2.11
HMGB1-201ENST00000326004 TMEM213A2RRL7 107 aa1.87□□□□□ -2.11
HMGB1-201ENST00000326004 TMEM114B3SHH9 223 aa1.87□□□□□ -2.11
HMGB1-201ENST00000326004 ATP6V1G2-DDX39BF2Z307 99 aa1.87□□□□□ -2.11
HMGB1-201ENST00000326004 J3QT63 122 aa1.87□□□□□ -2.11
HMGB1-201ENST00000326004 SULT1C2O00338 296 aa1.87□□□□□ -2.11
HMGB1-201ENST00000326004 AQP9O43315 295 aa1.87□□□□□ -2.11
HMGB1-201ENST00000326004 SULT1B1O43704 296 aa1.87□□□□□ -2.11
HMGB1-201ENST00000326004 REM1O75628 298 aa1.87□□□□□ -2.11
HMGB1-201ENST00000326004 CCNKO75909 580 aa1.87□□□□□ -2.11
HMGB1-201ENST00000326004 SLC22A5O76082 557 aa1.87□□□□□ -2.11
HMGB1-201ENST00000326004 CCNE2O96020 404 aa1.87□□□□□ -2.11
HMGB1-201ENST00000326004 IFNA14P01570 189 aa1.87□□□□□ -2.11
HMGB1-201ENST00000326004 IGKV1D-16P01601 117 aa1.87□□□□□ -2.11
HMGB1-201ENST00000326004 CD74P04233 296 aa1.87□□□□□ -2.11
HMGB1-201ENST00000326004 ZNF688P0C7X2 276 aa1.87□□□□□ -2.11
HMGB1-201ENST00000326004 HLA-GP17693 338 aa1.87□□□□□ -2.11
HMGB1-201ENST00000326004 CXCR1P25024 350 aa1.87□□□□□ -2.11
HMGB1-201ENST00000326004 CRABP2P29373 138 aa1.87□□□□□ -2.11
HMGB1-201ENST00000326004 EIF2B2P49770 351 aaKnown RBP1.87□□□□□ -2.11
HMGB1-201ENST00000326004 NKX2-5P52952 324 aaPredicted RBP1.87□□□□□ -2.11
HMGB1-201ENST00000326004 OR12D2P58182 307 aa1.87□□□□□ -2.11
HMGB1-201ENST00000326004 UBE2IP63279 158 aaKnown RBP1.87□□□□□ -2.11
HMGB1-201ENST00000326004 IL5RAQ01344 420 aa1.87□□□□□ -2.11
HMGB1-201ENST00000326004 ZNF816Q0VGE8 651 aaPredicted RBP1.87□□□□□ -2.11
HMGB1-201ENST00000326004 SPCS2Q15005 226 aa1.87□□□□□ -2.11
Retrieved 100 of 20,778 RNA–protein pairs in 87.5 ms