RNA–Protein interactions for RNA: ENST00000301897.5

CCDC88B-201, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 870 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-201ENST00000301897 OR10AC1Q8NH08 325 aa11.56□□□□□ -0.56
CCDC88B-201ENST00000301897 S1PR3Q99500 378 aa11.56□□□□□ -0.56
CCDC88B-201ENST00000301897 RIBC2Q9H4K1 309 aa11.56□□□□□ -0.56
CCDC88B-201ENST00000301897 IMPAD1Q9NX62 359 aa11.56□□□□□ -0.56
CCDC88B-201ENST00000301897 SNTNA6NMZ2 147 aa11.55□□□□□ -0.56
CCDC88B-201ENST00000301897 LY86O95711 162 aa11.55□□□□□ -0.56
CCDC88B-201ENST00000301897 SOX6P35712 828 aa11.55□□□□□ -0.56
CCDC88B-201ENST00000301897 CFHR3Q02985 330 aa11.55□□□□□ -0.56
CCDC88B-201ENST00000301897 AMIGO2Q86SJ2 522 aa11.55□□□□□ -0.56
CCDC88B-201ENST00000301897 ZNF429Q86V71 674 aa11.55□□□□□ -0.56
CCDC88B-201ENST00000301897 ACBD7Q8N6N7 88 aa11.55□□□□□ -0.56
CCDC88B-201ENST00000301897 RTN4IP1Q8WWV3 396 aaPredicted RBP11.55□□□□□ -0.56
CCDC88B-201ENST00000301897 PELI1Q96FA3 418 aa11.55□□□□□ -0.56
CCDC88B-201ENST00000301897 RCHY1Q96PM5 261 aa11.55□□□□□ -0.56
CCDC88B-201ENST00000301897 GPER1Q99527 375 aa11.55□□□□□ -0.56
CCDC88B-201ENST00000301897 IFT22Q9H7X7 185 aa11.55□□□□□ -0.56
CCDC88B-201ENST00000301897 RAB9BQ9NP90 201 aa11.55□□□□□ -0.56
CCDC88B-201ENST00000301897 IGHV3-72A0A0B4J1Y9 119 aa11.54□□□□□ -0.56
CCDC88B-201ENST00000301897 TMEM212A6NML5 194 aa11.54□□□□□ -0.56
CCDC88B-201ENST00000301897 J3QLW9 94 aa11.54□□□□□ -0.56
CCDC88B-201ENST00000301897 J3QRE1 110 aa11.54□□□□□ -0.56
CCDC88B-201ENST00000301897 IGF1P05019 195 aa11.54□□□□□ -0.56
CCDC88B-201ENST00000301897 LYL1P12980 280 aa11.54□□□□□ -0.56
CCDC88B-201ENST00000301897 ZNF19P17023 458 aa11.54□□□□□ -0.56
CCDC88B-201ENST00000301897 PSMB8P28062 276 aa11.54□□□□□ -0.56
CCDC88B-201ENST00000301897 REG1BP48304 166 aa11.54□□□□□ -0.56
CCDC88B-201ENST00000301897 RUNX1Q01196 453 aa11.54□□□□□ -0.56
CCDC88B-201ENST00000301897 MRPL28Q13084 256 aaKnown RBP11.54□□□□□ -0.56
CCDC88B-201ENST00000301897 SLC25A30Q5SVS4 291 aa11.54□□□□□ -0.56
CCDC88B-201ENST00000301897 MEDAGQ5VYS4 303 aa11.54□□□□□ -0.56
CCDC88B-201ENST00000301897 TMEM65Q6PI78 240 aa11.54□□□□□ -0.56
CCDC88B-201ENST00000301897 LINC00596Q86U02 117 aa11.54□□□□□ -0.56
CCDC88B-201ENST00000301897 TMEM104Q8NE00 496 aa11.54□□□□□ -0.56
CCDC88B-201ENST00000301897 OR11H1Q8NG94 326 aa11.54□□□□□ -0.56
CCDC88B-201ENST00000301897 PLPPR1Q8TBJ4 325 aa11.54□□□□□ -0.56
CCDC88B-201ENST00000301897 TNFAIP8L1Q8WVP5 186 aa11.54□□□□□ -0.56
CCDC88B-201ENST00000301897 RNFT2Q96EX2 444 aa11.54□□□□□ -0.56
CCDC88B-201ENST00000301897 C4orf36Q96KX1 117 aa11.54□□□□□ -0.56
CCDC88B-201ENST00000301897 UBE2E2Q96LR5 201 aa11.54□□□□□ -0.56
CCDC88B-201ENST00000301897 DPCDQ9BVM2 203 aaPredicted RBP11.54□□□□□ -0.56
CCDC88B-201ENST00000301897 ZMAT4Q9H898 229 aa11.54□□□□□ -0.56
CCDC88B-201ENST00000301897 PLSCR3Q9NRY6 295 aa11.54□□□□□ -0.56
CCDC88B-201ENST00000301897 DHDHQ9UQ10 334 aa11.54□□□□□ -0.56
CCDC88B-201ENST00000301897 AP4S1Q9Y587 144 aa11.54□□□□□ -0.56
CCDC88B-201ENST00000301897 DYNC2H1Q8NCM8 4307 aaKnown RBP11.53□□□□□ -0.56
CCDC88B-201ENST00000301897 A0A1W2PPE3 182 aa11.53□□□□□ -0.56
CCDC88B-201ENST00000301897 TMEM30CPA0ZSE6 113 aa11.53□□□□□ -0.56
CCDC88B-201ENST00000301897 SDCBPO00560 298 aaPredicted RBP11.53□□□□□ -0.56
CCDC88B-201ENST00000301897 RAB3AP20336 220 aa11.53□□□□□ -0.56
CCDC88B-201ENST00000301897 ZNF616Q08AN1 781 aa11.53□□□□□ -0.56
CCDC88B-201ENST00000301897 ZSCAN26Q16670 478 aa11.53□□□□□ -0.56
CCDC88B-201ENST00000301897 TMEM30BQ3MIR4 351 aa11.53□□□□□ -0.56
CCDC88B-201ENST00000301897 NHLRC3Q5JS37 347 aa11.53□□□□□ -0.56
CCDC88B-201ENST00000301897 FAM71E2Q8N5Q1 922 aa11.53□□□□□ -0.56
CCDC88B-201ENST00000301897 SUMF2Q8NBJ7 301 aa11.53□□□□□ -0.56
CCDC88B-201ENST00000301897 MYOZ3Q8TDC0 251 aa11.53□□□□□ -0.56
CCDC88B-201ENST00000301897 ARL11Q969Q4 196 aa11.53□□□□□ -0.56
CCDC88B-201ENST00000301897 ST6GALNAC6Q969X2 333 aa11.53□□□□□ -0.56
CCDC88B-201ENST00000301897 KCTD7Q96MP8 289 aa11.53□□□□□ -0.56
CCDC88B-201ENST00000301897 PALMDQ9NP74 551 aa11.53□□□□□ -0.56
CCDC88B-201ENST00000301897 GFOD1Q9NXC2 390 aa11.53□□□□□ -0.56
CCDC88B-201ENST00000301897 VSIG4Q9Y279 399 aa11.53□□□□□ -0.56
CCDC88B-201ENST00000301897 ORC5O43913 435 aa11.52□□□□□ -0.57
CCDC88B-201ENST00000301897 OR7C1O76099 320 aaPredicted RBP11.52□□□□□ -0.57
CCDC88B-201ENST00000301897 SNRPGP62308 76 aaKnown RBP11.52□□□□□ -0.57
CCDC88B-201ENST00000301897 GALEQ14376 348 aa11.52□□□□□ -0.57
CCDC88B-201ENST00000301897 PIGYQ3MUY2 71 aa11.52□□□□□ -0.57
CCDC88B-201ENST00000301897 ASCL4Q6XD76 172 aa11.52□□□□□ -0.57
CCDC88B-201ENST00000301897 SATL1Q86VE3 508 aa11.52□□□□□ -0.57
CCDC88B-201ENST00000301897 SYS1Q8N2H4 156 aa11.52□□□□□ -0.57
CCDC88B-201ENST00000301897 OR5AK2Q8NH90 309 aa11.52□□□□□ -0.57
CCDC88B-201ENST00000301897 TSEN15Q8WW01 171 aaKnown RBP11.52□□□□□ -0.57
CCDC88B-201ENST00000301897 FAM192AQ9GZU8 254 aa11.52□□□□□ -0.57
CCDC88B-201ENST00000301897 PAK1IP1Q9NWT1 392 aaPredicted RBP11.52□□□□□ -0.57
CCDC88B-201ENST00000301897 IL36GQ9NZH8 169 aa11.52□□□□□ -0.57
CCDC88B-201ENST00000301897 ST3GAL6Q9Y274 331 aa11.52□□□□□ -0.57
CCDC88B-201ENST00000301897 C15orf65H3BRN8 121 aa11.51□□□□□ -0.57
CCDC88B-201ENST00000301897 I3L521 148 aa11.51□□□□□ -0.57
CCDC88B-201ENST00000301897 GABRPO00591 440 aa11.51□□□□□ -0.57
CCDC88B-201ENST00000301897 HTR3BO95264 441 aa11.51□□□□□ -0.57
CCDC88B-201ENST00000301897 CSTBP04080 98 aaKnown RBP11.51□□□□□ -0.57
CCDC88B-201ENST00000301897 ZNF137PP52743 207 aa11.51□□□□□ -0.57
CCDC88B-201ENST00000301897 RBM11P57052 281 aaKnown RBP11.51□□□□□ -0.57
CCDC88B-201ENST00000301897 LPCAT4Q643R3 524 aa11.51□□□□□ -0.57
CCDC88B-201ENST00000301897 ZNF529Q6P280 563 aa11.51□□□□□ -0.57
CCDC88B-201ENST00000301897 SBSPONQ8IVN8 264 aa11.51□□□□□ -0.57
CCDC88B-201ENST00000301897 STX19Q8N4C7 294 aa11.51□□□□□ -0.57
CCDC88B-201ENST00000301897 OR1N2Q8NGR9 330 aa11.51□□□□□ -0.57
CCDC88B-201ENST00000301897 CENPNQ96H22 339 aaPredicted RBP11.51□□□□□ -0.57
CCDC88B-201ENST00000301897 HSPB9Q9BQS6 159 aa11.51□□□□□ -0.57
CCDC88B-201ENST00000301897 JAM3Q9BX67 310 aa11.51□□□□□ -0.57
CCDC88B-201ENST00000301897 METTL9Q9H1A3 318 aa11.51□□□□□ -0.57
CCDC88B-201ENST00000301897 ZNF107Q9UII5 783 aaPredicted RBP11.51□□□□□ -0.57
CCDC88B-201ENST00000301897 OAZ3Q9UMX2 235 aa11.51□□□□□ -0.57
CCDC88B-201ENST00000301897 EXOGQ9Y2C4 368 aaKnown RBP11.51□□□□□ -0.57
CCDC88B-201ENST00000301897 ORC6Q9Y5N6 252 aa11.51□□□□□ -0.57
CCDC88B-201ENST00000301897 TRAV39A0A0B4J263 110 aa11.5□□□□□ -0.57
CCDC88B-201ENST00000301897 SPINT2O43291 252 aa11.5□□□□□ -0.57
CCDC88B-201ENST00000301897 CD2P06729 351 aa11.5□□□□□ -0.57
CCDC88B-201ENST00000301897 MPV17LQ2QL34 196 aa11.5□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms