RNA–Protein interactions for RNA: ENST00000231656.12

CDX1-201, Transcript of caudal type homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CDX1, Length 1,758 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-201ENST00000231656 OR2H2O95918 312 aa19.04■□□□□ 0.64
CDX1-201ENST00000231656 ABCA11PQ4W5N1 156 aa19.04■□□□□ 0.64
CDX1-201ENST00000231656 SHEQ5VZ18 495 aa19.04■□□□□ 0.64
CDX1-201ENST00000231656 SPERTQ8NA61 448 aa19.04■□□□□ 0.64
CDX1-201ENST00000231656 NEUROG1Q92886 237 aa19.04■□□□□ 0.64
CDX1-201ENST00000231656 SLC2A9Q9NRM0 540 aa19.04■□□□□ 0.64
CDX1-201ENST00000231656 UBQLN2Q9UHD9 624 aa19.04■□□□□ 0.64
CDX1-201ENST00000231656 RNF115Q9Y4L5 304 aa19.04■□□□□ 0.64
CDX1-201ENST00000231656 SPTAN1Q13813 2472 aaKnown RBP19.04■□□□□ 0.64
CDX1-201ENST00000231656 PLAUP00749 431 aa19.04■□□□□ 0.64
CDX1-201ENST00000231656 OR4A8P0C604 315 aa19.04■□□□□ 0.64
CDX1-201ENST00000231656 PSMB6P28072 239 aa19.04■□□□□ 0.64
CDX1-201ENST00000231656 LOXP28300 417 aaPredicted RBP19.04■□□□□ 0.64
CDX1-201ENST00000231656 MDH2P40926 338 aaKnown RBP19.04■□□□□ 0.64
CDX1-201ENST00000231656 SPIN3Q5JUX0 258 aa19.04■□□□□ 0.64
CDX1-201ENST00000231656 RTN4IP1Q8WWV3 396 aaPredicted RBP19.04■□□□□ 0.64
CDX1-201ENST00000231656 GALNT14Q96FL9 552 aa19.04■□□□□ 0.64
CDX1-201ENST00000231656 OR10C1Q96KK4 312 aa19.04■□□□□ 0.64
CDX1-201ENST00000231656 METTL8Q9H825 291 aaKnown RBP19.04■□□□□ 0.64
CDX1-201ENST00000231656 RASL12Q9NYN1 266 aa19.04■□□□□ 0.64
CDX1-201ENST00000231656 TREM2Q9NZC2 230 aa19.04■□□□□ 0.64
CDX1-201ENST00000231656 TAAR3PQ9P1P4 343 aa19.04■□□□□ 0.64
CDX1-201ENST00000231656 E7EQL1 145 aa19.03■□□□□ 0.64
CDX1-201ENST00000231656 SIRPB1O00241 398 aa19.03■□□□□ 0.64
CDX1-201ENST00000231656 RP2O75695 350 aa19.03■□□□□ 0.64
CDX1-201ENST00000231656 TK1P04183 234 aa19.03■□□□□ 0.64
CDX1-201ENST00000231656 CTXN2P0C2S0 81 aa19.03■□□□□ 0.64
CDX1-201ENST00000231656 RNF224P0DH78 156 aa19.03■□□□□ 0.64
CDX1-201ENST00000231656 ZNF345Q14585 488 aa19.03■□□□□ 0.64
CDX1-201ENST00000231656 PHLDA2Q53GA4 152 aa19.03■□□□□ 0.64
CDX1-201ENST00000231656 PAN3Q58A45 887 aaKnown RBP19.03■□□□□ 0.64
CDX1-201ENST00000231656 ZNF826PQ6ZT77 177 aa19.03■□□□□ 0.64
CDX1-201ENST00000231656 OR5T2Q8NGG2 359 aa19.03■□□□□ 0.64
CDX1-201ENST00000231656 TMEM165Q9HC07 324 aa19.03■□□□□ 0.64
CDX1-201ENST00000231656 MAB21L2Q9Y586 359 aa19.03■□□□□ 0.64
CDX1-201ENST00000231656 A0A0D9SG52 128 aa19.02■□□□□ 0.64
CDX1-201ENST00000231656 POM121CA8CG34 1229 aa19.02■□□□□ 0.64
CDX1-201ENST00000231656 TUSC2O75896 110 aa19.02■□□□□ 0.64
CDX1-201ENST00000231656 IGFBP2P18065 325 aa19.02■□□□□ 0.64
CDX1-201ENST00000231656 IL15RAQ13261 267 aa19.02■□□□□ 0.64
CDX1-201ENST00000231656 PRAMEF6Q5VXH4 476 aa19.02■□□□□ 0.64
CDX1-201ENST00000231656 GAPTQ8N292 157 aa19.02■□□□□ 0.64
CDX1-201ENST00000231656 KCNRGQ8N5I3 272 aa19.02■□□□□ 0.64
CDX1-201ENST00000231656 THAP6Q8TBB0 222 aa19.02■□□□□ 0.64
CDX1-201ENST00000231656 PLPPR1Q8TBJ4 325 aa19.02■□□□□ 0.64
CDX1-201ENST00000231656 C2orf50Q96LR7 162 aa19.02■□□□□ 0.64
CDX1-201ENST00000231656 MBD2Q9UBB5 411 aa19.02■□□□□ 0.64
CDX1-201ENST00000231656 TRBV6-7A0A0A0MS04 114 aa19.01■□□□□ 0.63
CDX1-201ENST00000231656 RNF222A6NCQ9 220 aa19.01■□□□□ 0.63
CDX1-201ENST00000231656 ZSCAN5BA6NJL1 495 aa19.01■□□□□ 0.63
CDX1-201ENST00000231656 SH2D1BO14796 132 aa19.01■□□□□ 0.63
CDX1-201ENST00000231656 BET1O15155 118 aa19.01■□□□□ 0.63
CDX1-201ENST00000231656 OR2F2O95006 317 aa19.01■□□□□ 0.63
CDX1-201ENST00000231656 DIRAS3O95661 229 aa19.01■□□□□ 0.63
CDX1-201ENST00000231656 HOXB5P09067 269 aa19.01■□□□□ 0.63
CDX1-201ENST00000231656 KCNJ3P48549 501 aa19.01■□□□□ 0.63
CDX1-201ENST00000231656 AP2S1P53680 142 aaPredicted RBP19.01■□□□□ 0.63
CDX1-201ENST00000231656 HLA-DRB3P79483 266 aa19.01■□□□□ 0.63
CDX1-201ENST00000231656 OR2F1Q13607 317 aa19.01■□□□□ 0.63
CDX1-201ENST00000231656 TMEM187Q14656 261 aa19.01■□□□□ 0.63
CDX1-201ENST00000231656 WDR82Q6UXN9 313 aa19.01■□□□□ 0.63
CDX1-201ENST00000231656 ZNF497Q6ZNH5 498 aa19.01■□□□□ 0.63
CDX1-201ENST00000231656 OR8H3Q8N146 312 aa19.01■□□□□ 0.63
CDX1-201ENST00000231656 OR11L1Q8NGX0 322 aa19.01■□□□□ 0.63
CDX1-201ENST00000231656 TMEM204Q9BSN7 226 aa19.01■□□□□ 0.63
CDX1-201ENST00000231656 KCNIP3Q9Y2W7 256 aa19.01■□□□□ 0.63
CDX1-201ENST00000231656 RPS10-NUDT3A0A1W2PQS6 291 aa19.01■□□□□ 0.63
CDX1-201ENST00000231656 VSTM5A8MXK1 200 aa19.01■□□□□ 0.63
CDX1-201ENST00000231656 RCC1P18754 421 aaPredicted RBP19.01■□□□□ 0.63
CDX1-201ENST00000231656 ATXN7L3Q14CW9 347 aaPredicted RBP19.01■□□□□ 0.63
CDX1-201ENST00000231656 OR2Z1Q8NG97 314 aa19.01■□□□□ 0.63
CDX1-201ENST00000231656 OR4A4PQ8NGN8 299 aa19.01■□□□□ 0.63
CDX1-201ENST00000231656 LILRB1Q8NHL6 650 aaPredicted RBP19.01■□□□□ 0.63
CDX1-201ENST00000231656 RNF126Q9BV68 326 aa19.01■□□□□ 0.63
CDX1-201ENST00000231656 CHD3Q12873 2000 aaKnown RBP19■□□□□ 0.63
CDX1-201ENST00000231656 WNT9BO14905 357 aa19■□□□□ 0.63
CDX1-201ENST00000231656 HAND1O96004 215 aa19■□□□□ 0.63
CDX1-201ENST00000231656 OR5AC1P0C628 307 aa19■□□□□ 0.63
CDX1-201ENST00000231656 FIP1L1Q6UN15 594 aaKnown RBP19■□□□□ 0.63
CDX1-201ENST00000231656 ACOT7LQ6ZUV0 252 aa19■□□□□ 0.63
CDX1-201ENST00000231656 CCDC71LQ8N9Z2 235 aa19■□□□□ 0.63
CDX1-201ENST00000231656 CABLES2Q9BTV7 478 aa19■□□□□ 0.63
CDX1-201ENST00000231656 SUCNR1Q9BXA5 334 aa19■□□□□ 0.63
CDX1-201ENST00000231656 HRNRQ86YZ3 2850 aaPredicted RBP18.99■□□□□ 0.63
CDX1-201ENST00000231656 H0YIZ8 118 aa18.99■□□□□ 0.63
CDX1-201ENST00000231656 GNRHRP30968 328 aa18.99■□□□□ 0.63
CDX1-201ENST00000231656 SRSF1Q07955 248 aaKnown RBP eCLIP18.99■□□□□ 0.63
CDX1-201ENST00000231656 SP6Q3SY56 376 aa18.99■□□□□ 0.63
CDX1-201ENST00000231656 CLLU1Q5K131 121 aa18.99■□□□□ 0.63
CDX1-201ENST00000231656 MOB1BQ7L9L4 216 aa18.99■□□□□ 0.63
CDX1-201ENST00000231656 LRTM2Q8N967 370 aa18.99■□□□□ 0.63
CDX1-201ENST00000231656 FAM222BQ8WU58 562 aa18.99■□□□□ 0.63
CDX1-201ENST00000231656 CISD1Q9NZ45 108 aaKnown RBP18.99■□□□□ 0.63
CDX1-201ENST00000231656 A6NLC8 198 aa18.98■□□□□ 0.63
CDX1-201ENST00000231656 H7C1Q1 480 aa18.98■□□□□ 0.63
CDX1-201ENST00000231656 B3GALNT1O75752 331 aa18.98■□□□□ 0.63
CDX1-201ENST00000231656 LYL1P12980 280 aa18.98■□□□□ 0.63
CDX1-201ENST00000231656 ACP7Q6ZNF0 438 aa18.98■□□□□ 0.63
CDX1-201ENST00000231656 VRK1Q99986 396 aaPredicted RBP18.98■□□□□ 0.63
CDX1-201ENST00000231656 PCDHB10Q9UN67 800 aa18.98■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 49.9 ms