RNA–Protein interactions for RNA: ENST00000637551.2

CLN3-259, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,083 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-259ENST00000637551 CREB3L1Q96BA8 519 aa14.91□□□□□ -0.02
CLN3-259ENST00000637551 TMEM59Q9BXS4 323 aa14.91□□□□□ -0.02
CLN3-259ENST00000637551 ZNRD1Q9P1U0 126 aa14.91□□□□□ -0.02
CLN3-259ENST00000637551 MINOS1-NBL1R4GNA1 71 aa14.91□□□□□ -0.02
CLN3-259ENST00000637551 KBTBD11-OT1A0A1B0GTJ5 212 aa14.9□□□□□ -0.02
CLN3-259ENST00000637551 TMEM30CPA0ZSE6 113 aa14.9□□□□□ -0.02
CLN3-259ENST00000637551 MCRIP1C9JLW8 97 aa14.9□□□□□ -0.02
CLN3-259ENST00000637551 PDCD6O75340 191 aa14.9□□□□□ -0.02
CLN3-259ENST00000637551 VSIG8P0DPA2 414 aa14.9□□□□□ -0.02
CLN3-259ENST00000637551 CALCBP10092 127 aa14.9□□□□□ -0.02
CLN3-259ENST00000637551 GLIPR1P48060 266 aa14.9□□□□□ -0.02
CLN3-259ENST00000637551 RPS27AP62979 156 aaKnown RBP14.9□□□□□ -0.02
CLN3-259ENST00000637551 QRFPP83859 136 aa14.9□□□□□ -0.02
CLN3-259ENST00000637551 ATXN7L3Q14CW9 347 aaPredicted RBP14.9□□□□□ -0.02
CLN3-259ENST00000637551 TAF9Q16594 264 aa14.9□□□□□ -0.02
CLN3-259ENST00000637551 Q3ZCU0 254 aa14.9□□□□□ -0.02
CLN3-259ENST00000637551 TMEM104Q8NE00 496 aa14.9□□□□□ -0.02
CLN3-259ENST00000637551 URM1Q9BTM9 101 aaKnown RBP14.9□□□□□ -0.02
CLN3-259ENST00000637551 SELENOIQ9C0D9 397 aa14.9□□□□□ -0.02
CLN3-259ENST00000637551 MEGF9Q9H1U4 602 aa14.9□□□□□ -0.02
CLN3-259ENST00000637551 TMEM133Q9H2Q1 129 aa14.9□□□□□ -0.02
CLN3-259ENST00000637551 PLGRKTQ9HBL7 147 aa14.9□□□□□ -0.02
CLN3-259ENST00000637551 ESM1Q9NQ30 184 aa14.9□□□□□ -0.02
CLN3-259ENST00000637551 IGHV3OR16-10A0A075B7F0 116 aa14.89□□□□□ -0.03
CLN3-259ENST00000637551 VGLL3A8MV65 326 aa14.89□□□□□ -0.03
CLN3-259ENST00000637551 NPIPB11E5RHQ5 1161 aa14.89□□□□□ -0.03
CLN3-259ENST00000637551 ORC5O43913 435 aa14.89□□□□□ -0.03
CLN3-259ENST00000637551 PAHP00439 452 aa14.89□□□□□ -0.03
CLN3-259ENST00000637551 MELTFP08582 738 aa14.89□□□□□ -0.03
CLN3-259ENST00000637551 ARSBP15848 533 aa14.89□□□□□ -0.03
CLN3-259ENST00000637551 COMPP49747 757 aaPredicted RBP14.89□□□□□ -0.03
CLN3-259ENST00000637551 RAB11BQ15907 218 aa14.89□□□□□ -0.03
CLN3-259ENST00000637551 RUSC1-AS1Q66K80 236 aa14.89□□□□□ -0.03
CLN3-259ENST00000637551 ZNF497Q6ZNH5 498 aa14.89□□□□□ -0.03
CLN3-259ENST00000637551 TSPAN14Q8NG11 270 aa14.89□□□□□ -0.03
CLN3-259ENST00000637551 PTX4Q96A99 478 aa14.89□□□□□ -0.03
CLN3-259ENST00000637551 CLEC7AQ9BXN2 247 aa14.89□□□□□ -0.03
CLN3-259ENST00000637551 SSR3Q9UNL2 185 aa14.89□□□□□ -0.03
CLN3-259ENST00000637551 MEIKINA0A087WXM9 373 aa14.88□□□□□ -0.03
CLN3-259ENST00000637551 A0A0U1RQK1 487 aa14.88□□□□□ -0.03
CLN3-259ENST00000637551 A0A1W2PP11 408 aa14.88□□□□□ -0.03
CLN3-259ENST00000637551 MEIOCA2RUB1 952 aa14.88□□□□□ -0.03
CLN3-259ENST00000637551 AIPO00170 330 aa14.88□□□□□ -0.03
CLN3-259ENST00000637551 IL1AP01583 271 aa14.88□□□□□ -0.03
CLN3-259ENST00000637551 JUNBP17275 347 aaPredicted RBP14.88□□□□□ -0.03
CLN3-259ENST00000637551 IER3P46695 156 aa14.88□□□□□ -0.03
CLN3-259ENST00000637551 LGALS4P56470 323 aa14.88□□□□□ -0.03
CLN3-259ENST00000637551 SCAND1P57086 179 aa14.88□□□□□ -0.03
CLN3-259ENST00000637551 SLC9A3R2Q15599 337 aa14.88□□□□□ -0.03
CLN3-259ENST00000637551 RAB12Q6IQ22 244 aa14.88□□□□□ -0.03
CLN3-259ENST00000637551 FAM89BQ8N5H3 189 aa14.88□□□□□ -0.03
CLN3-259ENST00000637551 TPRX1Q8N7U7 411 aa14.88□□□□□ -0.03
CLN3-259ENST00000637551 OR52M1Q8NGK5 317 aa14.88□□□□□ -0.03
CLN3-259ENST00000637551 ZNF596Q8TC21 504 aa14.88□□□□□ -0.03
CLN3-259ENST00000637551 MALSU1Q96EH3 234 aa14.88□□□□□ -0.03
CLN3-259ENST00000637551 GFI1Q99684 422 aa14.88□□□□□ -0.03
CLN3-259ENST00000637551 C19orf24Q9BVV8 132 aa14.88□□□□□ -0.03
CLN3-259ENST00000637551 STEAP1Q9UHE8 339 aa14.88□□□□□ -0.03
CLN3-259ENST00000637551 KIF25Q9UIL4 384 aa14.88□□□□□ -0.03
CLN3-259ENST00000637551 IGHV2-26A0A0B4J1V2 119 aa14.87□□□□□ -0.03
CLN3-259ENST00000637551 BTBD17A6NE02 478 aa14.87□□□□□ -0.03
CLN3-259ENST00000637551 IFITM5A6NNB3 132 aa14.87□□□□□ -0.03
CLN3-259ENST00000637551 RAB3BP20337 219 aa14.87□□□□□ -0.03
CLN3-259ENST00000637551 DYNLT3P51808 116 aa14.87□□□□□ -0.03
CLN3-259ENST00000637551 KLRD1Q13241 179 aa14.87□□□□□ -0.03
CLN3-259ENST00000637551 UNC119Q13432 240 aa14.87□□□□□ -0.03
CLN3-259ENST00000637551 ATAD3CQ5T2N8 411 aa14.87□□□□□ -0.03
CLN3-259ENST00000637551 C6orf183Q5T699 404 aa14.87□□□□□ -0.03
CLN3-259ENST00000637551 LIAT1Q6ZQX7 453 aa14.87□□□□□ -0.03
CLN3-259ENST00000637551 PLPPR1Q8TBJ4 325 aa14.87□□□□□ -0.03
CLN3-259ENST00000637551 DYRK2Q92630 601 aa14.87□□□□□ -0.03
CLN3-259ENST00000637551 FAM3DQ96BQ1 224 aa14.87□□□□□ -0.03
CLN3-259ENST00000637551 KCTD7Q96MP8 289 aa14.87□□□□□ -0.03
CLN3-259ENST00000637551 NKX3-1Q99801 234 aaPredicted RBP14.87□□□□□ -0.03
CLN3-259ENST00000637551 RIMS4Q9H426 269 aaPredicted RBP14.87□□□□□ -0.03
CLN3-259ENST00000637551 TXNL4BQ9NX01 149 aaKnown RBP14.87□□□□□ -0.03
CLN3-259ENST00000637551 CALYQ9NYX4 217 aa14.87□□□□□ -0.03
CLN3-259ENST00000637551 HSF4Q9ULV5 492 aa14.87□□□□□ -0.03
CLN3-259ENST00000637551 AK6Q9Y3D8 172 aaKnown RBP14.87□□□□□ -0.03
CLN3-259ENST00000637551 LDLRAD4O15165 306 aa14.86□□□□□ -0.03
CLN3-259ENST00000637551 MPIG6BO95866 241 aa14.86□□□□□ -0.03
CLN3-259ENST00000637551 RAB6AP20340 208 aa14.86□□□□□ -0.03
CLN3-259ENST00000637551 CDK2P24941 298 aa14.86□□□□□ -0.03
CLN3-259ENST00000637551 CHATP28329 748 aa14.86□□□□□ -0.03
CLN3-259ENST00000637551 SIGIRRQ6IA17 410 aa14.86□□□□□ -0.03
CLN3-259ENST00000637551 C16orf87Q6PH81 154 aa14.86□□□□□ -0.03
CLN3-259ENST00000637551 PNKDQ8N490 385 aa14.86□□□□□ -0.03
CLN3-259ENST00000637551 C8orf31Q8N9H6 132 aa14.86□□□□□ -0.03
CLN3-259ENST00000637551 NEDD4LQ96PU5 975 aa14.86□□□□□ -0.03
CLN3-259ENST00000637551 BANF2Q9H503 90 aa14.86□□□□□ -0.03
CLN3-259ENST00000637551 PEX16Q9Y5Y5 336 aa14.86□□□□□ -0.03
CLN3-259ENST00000637551 A0A1B0GUS0 222 aa14.85□□□□□ -0.03
CLN3-259ENST00000637551 TMEM89A2RUT3 159 aa14.85□□□□□ -0.03
CLN3-259ENST00000637551 NOTOA8MTQ0 251 aa14.85□□□□□ -0.03
CLN3-259ENST00000637551 OOSP1A8MZH6 123 aa14.85□□□□□ -0.03
CLN3-259ENST00000637551 HSPB6O14558 160 aa14.85□□□□□ -0.03
CLN3-259ENST00000637551 HOXA3O43365 443 aaPredicted RBP14.85□□□□□ -0.03
CLN3-259ENST00000637551 IGLV1-47P01700 117 aa14.85□□□□□ -0.03
CLN3-259ENST00000637551 MT-ND4P03905 459 aa14.85□□□□□ -0.03
CLN3-259ENST00000637551 GLP1RP43220 463 aa14.85□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms