RNA–Protein interactions for RNA: ENST00000635973.1

CLN3-243, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,084 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-243ENST00000635973 BPIFB3P59826 476 aa14.83□□□□□ -0.04
CLN3-243ENST00000635973 LSM3P62310 102 aaKnown RBP14.83□□□□□ -0.04
CLN3-243ENST00000635973 GUCA2AQ02747 115 aa14.83□□□□□ -0.04
CLN3-243ENST00000635973 PRB3Q04118 309 aaPredicted RBP14.83□□□□□ -0.04
CLN3-243ENST00000635973 UNC119Q13432 240 aa14.83□□□□□ -0.04
CLN3-243ENST00000635973 RBM39Q14498 530 aaKnown RBP14.83□□□□□ -0.04
CLN3-243ENST00000635973 TUSC1Q2TAM9 212 aa14.83□□□□□ -0.04
CLN3-243ENST00000635973 BRICD5Q6PL45 260 aa14.83□□□□□ -0.04
CLN3-243ENST00000635973 BRD3OSQ6XYD6 125 aa14.83□□□□□ -0.04
CLN3-243ENST00000635973 C1orf122Q6ZSJ8 110 aa14.83□□□□□ -0.04
CLN3-243ENST00000635973 Q8N7P7 452 aa14.83□□□□□ -0.04
CLN3-243ENST00000635973 OR13F1Q8NGS4 319 aa14.83□□□□□ -0.04
CLN3-243ENST00000635973 COQ2Q96H96 371 aa14.83□□□□□ -0.04
CLN3-243ENST00000635973 NEDD4LQ96PU5 975 aa14.83□□□□□ -0.04
CLN3-243ENST00000635973 GAL3ST2Q9H3Q3 398 aa14.83□□□□□ -0.04
CLN3-243ENST00000635973 OR6C3Q9NZP0 311 aa14.83□□□□□ -0.04
CLN3-243ENST00000635973 KIF25Q9UIL4 384 aa14.83□□□□□ -0.04
CLN3-243ENST00000635973 UBE2J1Q9Y385 318 aaPredicted RBP14.83□□□□□ -0.04
CLN3-243ENST00000635973 PEX16Q9Y5Y5 336 aa14.83□□□□□ -0.04
CLN3-243ENST00000635973 WIPF1O43516 503 aa14.82□□□□□ -0.04
CLN3-243ENST00000635973 PDCD6O75340 191 aa14.82□□□□□ -0.04
CLN3-243ENST00000635973 FUT3P21217 361 aa14.82□□□□□ -0.04
CLN3-243ENST00000635973 ERVFRD-1P60508 538 aa14.82□□□□□ -0.04
CLN3-243ENST00000635973 KLRD1Q13241 179 aa14.82□□□□□ -0.04
CLN3-243ENST00000635973 C2orf76Q3KRA6 126 aa14.82□□□□□ -0.04
CLN3-243ENST00000635973 RUSC1-AS1Q66K80 236 aa14.82□□□□□ -0.04
CLN3-243ENST00000635973 TCF23Q7RTU1 214 aa14.82□□□□□ -0.04
CLN3-243ENST00000635973 PLPPR1Q8TBJ4 325 aa14.82□□□□□ -0.04
CLN3-243ENST00000635973 FUNDC2Q9BWH2 189 aa14.82□□□□□ -0.04
CLN3-243ENST00000635973 LIN7BQ9HAP6 207 aa14.82□□□□□ -0.04
CLN3-243ENST00000635973 RCC2Q9P258 522 aaKnown RBP14.82□□□□□ -0.04
CLN3-243ENST00000635973 SOX21Q9Y651 276 aaPredicted RBP14.82□□□□□ -0.04
CLN3-243ENST00000635973 IGHV1-69DA0A0B4J2H0 117 aa14.81□□□□□ -0.04
CLN3-243ENST00000635973 CENPVL3A0A0U1RRI6 287 aa14.81□□□□□ -0.04
CLN3-243ENST00000635973 TMEM272A0A1B0GTI8 110 aa14.81□□□□□ -0.04
CLN3-243ENST00000635973 MDFIC2A0A1B0GVS7 189 aa14.81□□□□□ -0.04
CLN3-243ENST00000635973 TMEM30CPA0ZSE6 113 aa14.81□□□□□ -0.04
CLN3-243ENST00000635973 HOXA3O43365 443 aaPredicted RBP14.81□□□□□ -0.04
CLN3-243ENST00000635973 IGHV1-69P01742 117 aa14.81□□□□□ -0.04
CLN3-243ENST00000635973 CRYBA1P05813 215 aa14.81□□□□□ -0.04
CLN3-243ENST00000635973 QRFPP83859 136 aa14.81□□□□□ -0.04
CLN3-243ENST00000635973 DEFB112Q30KQ8 113 aa14.81□□□□□ -0.04
CLN3-243ENST00000635973 RSBN1Q5VWQ0 802 aaPredicted RBP14.81□□□□□ -0.04
CLN3-243ENST00000635973 SFXN4Q6P4A7 337 aa14.81□□□□□ -0.04
CLN3-243ENST00000635973 C16orf87Q6PH81 154 aa14.81□□□□□ -0.04
CLN3-243ENST00000635973 ZNF782Q6ZMW2 699 aaPredicted RBP14.81□□□□□ -0.04
CLN3-243ENST00000635973 GPR141Q7Z602 305 aa14.81□□□□□ -0.04
CLN3-243ENST00000635973 NR2C2APQ86WQ0 139 aa14.81□□□□□ -0.04
CLN3-243ENST00000635973 NICN1Q9BSH3 213 aa14.81□□□□□ -0.04
CLN3-243ENST00000635973 TM2D1Q9BX74 207 aa14.81□□□□□ -0.04
CLN3-243ENST00000635973 UNKLQ9H9P5 680 aaKnown RBP14.81□□□□□ -0.04
CLN3-243ENST00000635973 TNFRSF19Q9NS68 423 aa14.81□□□□□ -0.04
CLN3-243ENST00000635973 ETAA1Q9NY74 926 aa14.81□□□□□ -0.04
CLN3-243ENST00000635973 DAPK2Q9UIK4 370 aa14.81□□□□□ -0.04
CLN3-243ENST00000635973 A0A0B4J203 849 aa14.8□□□□□ -0.04
CLN3-243ENST00000635973 A0A1W2PRD5 423 aa14.8□□□□□ -0.04
CLN3-243ENST00000635973 A0A1W2PRF3 423 aa14.8□□□□□ -0.04
CLN3-243ENST00000635973 A0A1W2PRM7 423 aa14.8□□□□□ -0.04
CLN3-243ENST00000635973 POM121CA8CG34 1229 aa14.8□□□□□ -0.04
CLN3-243ENST00000635973 C17orf98A8MV24 154 aa14.8□□□□□ -0.04
CLN3-243ENST00000635973 CLPXO76031 633 aa14.8□□□□□ -0.04
CLN3-243ENST00000635973 RBP4P02753 201 aa14.8□□□□□ -0.04
CLN3-243ENST00000635973 CLEC2LP0C7M8 214 aa14.8□□□□□ -0.04
CLN3-243ENST00000635973 SLC2A2P11168 524 aaPredicted RBP14.8□□□□□ -0.04
CLN3-243ENST00000635973 COX7A1P24310 79 aa14.8□□□□□ -0.04
CLN3-243ENST00000635973 DLX6P56179 175 aa14.8□□□□□ -0.04
CLN3-243ENST00000635973 SLC35E4Q6ICL7 350 aa14.8□□□□□ -0.04
CLN3-243ENST00000635973 ZNF565Q8N9K5 539 aa14.8□□□□□ -0.04
CLN3-243ENST00000635973 LPAR5Q9H1C0 372 aa14.8□□□□□ -0.04
CLN3-243ENST00000635973 HEXA-AS1Q9H8Q6 139 aa14.8□□□□□ -0.04
CLN3-243ENST00000635973 UBE2QL1A1L167 161 aa14.79□□□□□ -0.04
CLN3-243ENST00000635973 RNASEK-C17orf49H0YIS7 233 aa14.79□□□□□ -0.04
CLN3-243ENST00000635973 BLVRBP30043 206 aaPredicted RBP14.79□□□□□ -0.04
CLN3-243ENST00000635973 TGFBR1P36897 503 aa14.79□□□□□ -0.04
CLN3-243ENST00000635973 PAX5Q02548 391 aa14.79□□□□□ -0.04
CLN3-243ENST00000635973 SIGIRRQ6IA17 410 aa14.79□□□□□ -0.04
CLN3-243ENST00000635973 OR13D1Q8NGV5 346 aa14.79□□□□□ -0.04
CLN3-243ENST00000635973 DSCAML1Q8TD84 2053 aa14.79□□□□□ -0.04
CLN3-243ENST00000635973 MRGPRDQ8TDS7 321 aa14.79□□□□□ -0.04
CLN3-243ENST00000635973 CORO2AQ92828 525 aa14.79□□□□□ -0.04
CLN3-243ENST00000635973 PLEKHJ1Q9NW61 149 aa14.79□□□□□ -0.04
CLN3-243ENST00000635973 TAS2R3Q9NYW6 316 aa14.79□□□□□ -0.04
CLN3-243ENST00000635973 FBLN5Q9UBX5 448 aa14.79□□□□□ -0.04
CLN3-243ENST00000635973 RAB22AQ9UL26 194 aa14.79□□□□□ -0.04
CLN3-243ENST00000635973 A0A0A6YYD4 124 aa14.78□□□□□ -0.04
CLN3-243ENST00000635973 ZNF729A6NN14 1252 aaPredicted RBP14.78□□□□□ -0.04
CLN3-243ENST00000635973 GLAP06280 429 aa14.78□□□□□ -0.04
CLN3-243ENST00000635973 IGHV1-8P0DP01 117 aa14.78□□□□□ -0.04
CLN3-243ENST00000635973 CHATP28329 748 aa14.78□□□□□ -0.04
CLN3-243ENST00000635973 VEGFCP49767 419 aa14.78□□□□□ -0.04
CLN3-243ENST00000635973 FAM189A2Q15884 450 aa14.78□□□□□ -0.04
CLN3-243ENST00000635973 IDNKQ5T6J7 187 aa14.78□□□□□ -0.04
CLN3-243ENST00000635973 PRAMEF5Q5TYX0 476 aa14.78□□□□□ -0.04
CLN3-243ENST00000635973 OR13A1Q8NGR1 328 aa14.78□□□□□ -0.04
CLN3-243ENST00000635973 CCDC107Q8WV48 283 aa14.78□□□□□ -0.04
CLN3-243ENST00000635973 DYRK2Q92630 601 aa14.78□□□□□ -0.04
CLN3-243ENST00000635973 TNFRSF14Q92956 283 aa14.78□□□□□ -0.04
CLN3-243ENST00000635973 NCOR1P1Q9H4R4 102 aa14.78□□□□□ -0.04
CLN3-243ENST00000635973 SESN1Q9Y6P5 492 aa14.78□□□□□ -0.04
CLN3-243ENST00000635973 KIAA2026Q5HYC2 2103 aa14.77□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms