RNA–Protein interactions for RNA: ENST00000617339.4

SHROOM1-208, Transcript of shroom family member 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SHROOM1, Length 3,638 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-208ENST00000617339 PHLDA2Q53GA4 152 aa12.51□□□□□ -0.41
SHROOM1-208ENST00000617339 SLC25A26Q70HW3 274 aa12.51□□□□□ -0.41
SHROOM1-208ENST00000617339 CPT1CQ8TCG5 803 aa12.51□□□□□ -0.41
SHROOM1-208ENST00000617339 MISP3Q96FF7 219 aa12.51□□□□□ -0.41
SHROOM1-208ENST00000617339 TTTY12Q9BZ98 90 aa12.51□□□□□ -0.41
SHROOM1-208ENST00000617339 RAB18Q9NP72 206 aa12.51□□□□□ -0.41
SHROOM1-208ENST00000617339 FAM212BQ9NTI7 297 aaPredicted RBP12.51□□□□□ -0.41
SHROOM1-208ENST00000617339 TRGV5A0A0B4J1U4 118 aa12.51□□□□□ -0.41
SHROOM1-208ENST00000617339 TERTO14746 1132 aaKnown RBP12.51□□□□□ -0.41
SHROOM1-208ENST00000617339 CYB5BO43169 146 aa12.51□□□□□ -0.41
SHROOM1-208ENST00000617339 NXPH3O95157 252 aa12.51□□□□□ -0.41
SHROOM1-208ENST00000617339 SNRPCP09234 159 aaKnown RBP12.51□□□□□ -0.41
SHROOM1-208ENST00000617339 DDTP30046 118 aa12.51□□□□□ -0.41
SHROOM1-208ENST00000617339 TAGLN2P37802 199 aaKnown RBP12.51□□□□□ -0.41
SHROOM1-208ENST00000617339 HOXA4Q00056 320 aaPredicted RBP12.51□□□□□ -0.41
SHROOM1-208ENST00000617339 CPEB3Q8NE35 698 aaKnown RBP12.51□□□□□ -0.41
SHROOM1-208ENST00000617339 SLC7A11Q9UPY5 501 aa12.51□□□□□ -0.41
SHROOM1-208ENST00000617339 SPENQ96T58 3664 aaKnown RBP12.51□□□□□ -0.41
SHROOM1-208ENST00000617339 ACACBO00763 2458 aa12.51□□□□□ -0.41
SHROOM1-208ENST00000617339 TGIF2-C20orf24A0A0A6YYL0 155 aa12.51□□□□□ -0.41
SHROOM1-208ENST00000617339 NKX6-1P78426 367 aaPredicted RBP12.51□□□□□ -0.41
SHROOM1-208ENST00000617339 HAGHQ16775 308 aa12.51□□□□□ -0.41
SHROOM1-208ENST00000617339 TGIF2LXQ8IUE1 241 aa12.51□□□□□ -0.41
SHROOM1-208ENST00000617339 ZNF611Q8N823 705 aa12.51□□□□□ -0.41
SHROOM1-208ENST00000617339 ATG101Q9BSB4 218 aa12.51□□□□□ -0.41
SHROOM1-208ENST00000617339 TMEM38BQ9NVV0 291 aa12.51□□□□□ -0.41
SHROOM1-208ENST00000617339 GPR132Q9UNW8 380 aa12.51□□□□□ -0.41
SHROOM1-208ENST00000617339 PPP1R2P9O14990 202 aa12.5□□□□□ -0.41
SHROOM1-208ENST00000617339 GALR2O43603 387 aaPredicted RBP12.5□□□□□ -0.41
SHROOM1-208ENST00000617339 LYZL6O75951 148 aa12.5□□□□□ -0.41
SHROOM1-208ENST00000617339 NRASP01111 189 aa12.5□□□□□ -0.41
SHROOM1-208ENST00000617339 SOD3P08294 240 aa12.5□□□□□ -0.41
SHROOM1-208ENST00000617339 CXCL1P09341 107 aa12.5□□□□□ -0.41
SHROOM1-208ENST00000617339 NPBWR2P48146 333 aa12.5□□□□□ -0.41
SHROOM1-208ENST00000617339 FAHD2BQ6P2I3 314 aaPredicted RBP12.5□□□□□ -0.41
SHROOM1-208ENST00000617339 POC1AQ8NBT0 407 aa12.5□□□□□ -0.41
SHROOM1-208ENST00000617339 FAHD2AQ96GK7 314 aa12.5□□□□□ -0.41
SHROOM1-208ENST00000617339 GPR35Q9HC97 309 aa12.5□□□□□ -0.41
SHROOM1-208ENST00000617339 MEMO1Q9Y316 297 aa12.5□□□□□ -0.41
SHROOM1-208ENST00000617339 RELNP78509 3460 aa12.5□□□□□ -0.41
SHROOM1-208ENST00000617339 SMG1Q96Q15 3661 aaKnown RBP12.5□□□□□ -0.41
SHROOM1-208ENST00000617339 NCKAP5O14513 1909 aa12.5□□□□□ -0.41
SHROOM1-208ENST00000617339 LDLRAD4O15165 306 aa12.5□□□□□ -0.41
SHROOM1-208ENST00000617339 TRGC2P03986 189 aa12.5□□□□□ -0.41
SHROOM1-208ENST00000617339 PAX6P26367 422 aa12.5□□□□□ -0.41
SHROOM1-208ENST00000617339 KHDC3LQ587J8 217 aa12.5□□□□□ -0.41
SHROOM1-208ENST00000617339 C17orf78Q8N4C9 275 aa12.5□□□□□ -0.41
SHROOM1-208ENST00000617339 ZNF610Q8N9Z0 462 aa12.5□□□□□ -0.41
SHROOM1-208ENST00000617339 C19orf12Q9NSK7 152 aa12.5□□□□□ -0.41
SHROOM1-208ENST00000617339 PRSS50Q9UI38 385 aa12.5□□□□□ -0.41
SHROOM1-208ENST00000617339 WASF3Q9UPY6 502 aa12.5□□□□□ -0.41
SHROOM1-208ENST00000617339 TSTD3H0UI37 97 aa12.5□□□□□ -0.41
SHROOM1-208ENST00000617339 CHATP28329 748 aa12.5□□□□□ -0.41
SHROOM1-208ENST00000617339 GPM6AP51674 278 aa12.5□□□□□ -0.41
SHROOM1-208ENST00000617339 TMEM268Q5VZI3 342 aa12.5□□□□□ -0.41
SHROOM1-208ENST00000617339 PLCE1Q9P212 2302 aa12.5□□□□□ -0.41
SHROOM1-208ENST00000617339 IL36RNQ9UBH0 155 aa12.5□□□□□ -0.41
SHROOM1-208ENST00000617339 ZNF716A6NP11 495 aa12.49□□□□□ -0.41
SHROOM1-208ENST00000617339 JTBO76095 146 aa12.49□□□□□ -0.41
SHROOM1-208ENST00000617339 UBE2KP61086 200 aa12.49□□□□□ -0.41
SHROOM1-208ENST00000617339 RAB1AP62820 205 aa12.49□□□□□ -0.41
SHROOM1-208ENST00000617339 OR2T2Q6IF00 324 aa12.49□□□□□ -0.41
SHROOM1-208ENST00000617339 NUFIP2Q7Z417 695 aaKnown RBP12.49□□□□□ -0.41
SHROOM1-208ENST00000617339 OR13G1Q8NGZ3 307 aa12.49□□□□□ -0.41
SHROOM1-208ENST00000617339 RTBDNQ9BSG5 229 aaPredicted RBP12.49□□□□□ -0.41
SHROOM1-208ENST00000617339 SLC35B3Q9H1N7 401 aa12.49□□□□□ -0.41
SHROOM1-208ENST00000617339 PARD6AQ9NPB6 346 aa12.49□□□□□ -0.41
SHROOM1-208ENST00000617339 DUSP13Q9UII6 198 aa12.49□□□□□ -0.41
SHROOM1-208ENST00000617339 TMEM14DPA8MWL7 114 aa12.49□□□□□ -0.41
SHROOM1-208ENST00000617339 HPNP05981 417 aa12.49□□□□□ -0.41
SHROOM1-208ENST00000617339 APLNRP35414 380 aa12.49□□□□□ -0.41
SHROOM1-208ENST00000617339 FOXO1Q12778 655 aa12.49□□□□□ -0.41
SHROOM1-208ENST00000617339 FAM27BQ5VT28 67 aa12.49□□□□□ -0.41
SHROOM1-208ENST00000617339 HEPN1Q6WQI6 88 aa12.49□□□□□ -0.41
SHROOM1-208ENST00000617339 REC114Q7Z4M0 266 aa12.49□□□□□ -0.41
SHROOM1-208ENST00000617339 OR56B2PQ8NGI1 322 aa12.49□□□□□ -0.41
SHROOM1-208ENST00000617339 ZNF2Q9BSG1 426 aaPredicted RBP12.49□□□□□ -0.41
SHROOM1-208ENST00000617339 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP12.49□□□□□ -0.41
SHROOM1-208ENST00000617339 CRIM1Q9NZV1 1036 aa12.49□□□□□ -0.41
SHROOM1-208ENST00000617339 GTF3C1Q12789 2109 aa12.49□□□□□ -0.41
SHROOM1-208ENST00000617339 IGKV1-27A0A075B6S5 117 aa12.49□□□□□ -0.41
SHROOM1-208ENST00000617339 DHRS7CA6NNS2 312 aa12.49□□□□□ -0.41
SHROOM1-208ENST00000617339 CDRT15L2A8MXV6 281 aa12.49□□□□□ -0.41
SHROOM1-208ENST00000617339 H0YL77 283 aa12.49□□□□□ -0.41
SHROOM1-208ENST00000617339 LSM6P62312 80 aaKnown RBP12.49□□□□□ -0.41
SHROOM1-208ENST00000617339 HIST3H3Q16695 136 aa12.49□□□□□ -0.41
SHROOM1-208ENST00000617339 FDCSPQ8NFU4 85 aa12.49□□□□□ -0.41
SHROOM1-208ENST00000617339 MRPL24Q96A35 216 aaKnown RBP12.49□□□□□ -0.41
SHROOM1-208ENST00000617339 PRRX2Q99811 253 aa12.49□□□□□ -0.41
SHROOM1-208ENST00000617339 GPR87Q9BY21 358 aa12.49□□□□□ -0.41
SHROOM1-208ENST00000617339 CDH20Q9HBT6 801 aa12.49□□□□□ -0.41
SHROOM1-208ENST00000617339 FZR1Q9UM11 496 aa12.49□□□□□ -0.41
SHROOM1-208ENST00000617339 ST3GAL6Q9Y274 331 aa12.49□□□□□ -0.41
SHROOM1-208ENST00000617339 TCAPO15273 167 aa12.48□□□□□ -0.41
SHROOM1-208ENST00000617339 MALLQ13021 153 aa12.48□□□□□ -0.41
SHROOM1-208ENST00000617339 SPIN3Q5JUX0 258 aa12.48□□□□□ -0.41
SHROOM1-208ENST00000617339 CALHM1Q8IU99 346 aa12.48□□□□□ -0.41
SHROOM1-208ENST00000617339 Q8WTZ3 238 aa12.48□□□□□ -0.41
SHROOM1-208ENST00000617339 NTNG2Q96CW9 530 aa12.48□□□□□ -0.41
SHROOM1-208ENST00000617339 OR2H1Q9GZK4 316 aa12.48□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms