RNA–Protein interactions for RNA: ENST00000616974.1

LINC00540-202, long intergenic non-protein coding RNA 540, humanhuman

TSL 1 (best)

Gene LINC00540, Length 2,143 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-202ENST00000616974 UNKLQ9H9P5 680 aaKnown RBP10.97□□□□□ -0.65
LINC00540-202ENST00000616974 MEIOCA2RUB1 952 aa10.97□□□□□ -0.65
LINC00540-202ENST00000616974 DNAJC9-AS1A6NH13 148 aa10.97□□□□□ -0.65
LINC00540-202ENST00000616974 IFITM5A6NNB3 132 aa10.97□□□□□ -0.65
LINC00540-202ENST00000616974 LDLRAD4O15165 306 aa10.97□□□□□ -0.65
LINC00540-202ENST00000616974 HOXA3O43365 443 aaPredicted RBP10.97□□□□□ -0.65
LINC00540-202ENST00000616974 ZNF780AO75290 641 aaPredicted RBP10.97□□□□□ -0.65
LINC00540-202ENST00000616974 ERP29P30040 261 aaKnown RBP10.97□□□□□ -0.65
LINC00540-202ENST00000616974 C11orf91Q3C1V1 193 aa10.97□□□□□ -0.65
LINC00540-202ENST00000616974 PLA1AQ53H76 456 aa10.97□□□□□ -0.65
LINC00540-202ENST00000616974 FUNDC2Q9BWH2 189 aa10.97□□□□□ -0.65
LINC00540-202ENST00000616974 SUCNR1Q9BXA5 334 aa10.97□□□□□ -0.65
LINC00540-202ENST00000616974 IFT22Q9H7X7 185 aa10.97□□□□□ -0.65
LINC00540-202ENST00000616974 LIN7BQ9HAP6 207 aa10.97□□□□□ -0.65
LINC00540-202ENST00000616974 hADV38S2A0JD32 116 aa10.96□□□□□ -0.65
LINC00540-202ENST00000616974 FOXI3A8MTJ6 420 aaPredicted RBP10.96□□□□□ -0.65
LINC00540-202ENST00000616974 IGHV4-59P01825 116 aa10.96□□□□□ -0.65
LINC00540-202ENST00000616974 TFAP2AP05549 437 aa10.96□□□□□ -0.65
LINC00540-202ENST00000616974 SNRPBP14678 240 aaKnown RBP10.96□□□□□ -0.65
LINC00540-202ENST00000616974 CHATP28329 748 aa10.96□□□□□ -0.65
LINC00540-202ENST00000616974 HILS1P60008 231 aa10.96□□□□□ -0.65
LINC00540-202ENST00000616974 NCS1P62166 190 aa10.96□□□□□ -0.65
LINC00540-202ENST00000616974 PLAC9Q5JTB6 97 aa10.96□□□□□ -0.65
LINC00540-202ENST00000616974 SLC16A12Q6ZSM3 486 aa10.96□□□□□ -0.65
LINC00540-202ENST00000616974 C9orf139Q6ZV77 190 aa10.96□□□□□ -0.65
LINC00540-202ENST00000616974 CMTM4Q8IZR5 234 aa10.96□□□□□ -0.65
LINC00540-202ENST00000616974 NEK7Q8TDX7 302 aa10.96□□□□□ -0.65
LINC00540-202ENST00000616974 ZMAT3Q9HA38 289 aaKnown RBP10.96□□□□□ -0.65
LINC00540-202ENST00000616974 DAPK2Q9UIK4 370 aa10.96□□□□□ -0.65
LINC00540-202ENST00000616974 SSR3Q9UNL2 185 aa10.96□□□□□ -0.65
LINC00540-202ENST00000616974 IGHV3-43A0A0B4J1X8 118 aa10.96□□□□□ -0.66
LINC00540-202ENST00000616974 A0A1W2PPE3 182 aa10.96□□□□□ -0.66
LINC00540-202ENST00000616974 NPFFO15130 113 aa10.96□□□□□ -0.66
LINC00540-202ENST00000616974 TCF21O43680 179 aa10.96□□□□□ -0.66
LINC00540-202ENST00000616974 BPNT1O95861 308 aa10.96□□□□□ -0.66
LINC00540-202ENST00000616974 IGHV3-43DP0DP04 118 aa10.96□□□□□ -0.66
LINC00540-202ENST00000616974 MYL9P24844 172 aa10.96□□□□□ -0.66
LINC00540-202ENST00000616974 VEGFCP49767 419 aa10.96□□□□□ -0.66
LINC00540-202ENST00000616974 RAB13P51153 203 aa10.96□□□□□ -0.66
LINC00540-202ENST00000616974 MEF2CQ06413 473 aaPredicted RBP10.96□□□□□ -0.66
LINC00540-202ENST00000616974 MPV17LQ2QL34 196 aa10.96□□□□□ -0.66
LINC00540-202ENST00000616974 ZNF497Q6ZNH5 498 aa10.96□□□□□ -0.66
LINC00540-202ENST00000616974 C1orf122Q6ZSJ8 110 aa10.96□□□□□ -0.66
LINC00540-202ENST00000616974 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP10.96□□□□□ -0.66
LINC00540-202ENST00000616974 OR13F1Q8NGS4 319 aa10.96□□□□□ -0.66
LINC00540-202ENST00000616974 OR5H6Q8NGV6 325 aa10.96□□□□□ -0.66
LINC00540-202ENST00000616974 ZNF286AQ9HBT8 521 aa10.96□□□□□ -0.66
LINC00540-202ENST00000616974 FBLN5Q9UBX5 448 aa10.96□□□□□ -0.66
LINC00540-202ENST00000616974 STEAP1Q9UHE8 339 aa10.96□□□□□ -0.66
LINC00540-202ENST00000616974 CMYA5Q8N3K9 4069 aa10.95□□□□□ -0.66
LINC00540-202ENST00000616974 TRGV10A0A0A0MS01 117 aa10.95□□□□□ -0.66
LINC00540-202ENST00000616974 CLPXO76031 633 aa10.95□□□□□ -0.66
LINC00540-202ENST00000616974 MT-ND4P03905 459 aa10.95□□□□□ -0.66
LINC00540-202ENST00000616974 UBE2E1P51965 193 aa10.95□□□□□ -0.66
LINC00540-202ENST00000616974 VBP1P61758 197 aa10.95□□□□□ -0.66
LINC00540-202ENST00000616974 SLC9A3R2Q15599 337 aa10.95□□□□□ -0.66
LINC00540-202ENST00000616974 KIRREL1Q96J84 757 aa10.95□□□□□ -0.66
LINC00540-202ENST00000616974 CST11Q9H112 138 aa10.95□□□□□ -0.66
LINC00540-202ENST00000616974 CALYQ9NYX4 217 aa10.95□□□□□ -0.66
LINC00540-202ENST00000616974 KCNK7Q9Y2U2 307 aa10.95□□□□□ -0.66
LINC00540-202ENST00000616974 MGAM2Q2M2H8 2515 aa10.95□□□□□ -0.66
LINC00540-202ENST00000616974 AIREO43918 545 aa10.94□□□□□ -0.66
LINC00540-202ENST00000616974 MELTFP08582 738 aa10.94□□□□□ -0.66
LINC00540-202ENST00000616974 NFYBP25208 207 aa10.94□□□□□ -0.66
LINC00540-202ENST00000616974 BLVRBP30043 206 aaPredicted RBP10.94□□□□□ -0.66
LINC00540-202ENST00000616974 RPS19P39019 145 aaKnown RBP10.94□□□□□ -0.66
LINC00540-202ENST00000616974 GPR176Q14439 515 aa10.94□□□□□ -0.66
LINC00540-202ENST00000616974 SFXN4Q6P4A7 337 aa10.94□□□□□ -0.66
LINC00540-202ENST00000616974 PRR18Q8N4B5 295 aa10.94□□□□□ -0.66
LINC00540-202ENST00000616974 KCNG3Q8TAE7 436 aa10.94□□□□□ -0.66
LINC00540-202ENST00000616974 ARHGAP5-AS1Q96IT6 56 aa10.94□□□□□ -0.66
LINC00540-202ENST00000616974 KCTD7Q96MP8 289 aa10.94□□□□□ -0.66
LINC00540-202ENST00000616974 TM2D1Q9BX74 207 aa10.94□□□□□ -0.66
LINC00540-202ENST00000616974 IGHV2-26A0A0B4J1V2 119 aa10.94□□□□□ -0.66
LINC00540-202ENST00000616974 ODF3BA8MYP8 253 aa10.94□□□□□ -0.66
LINC00540-202ENST00000616974 C15orf65H3BRN8 121 aa10.94□□□□□ -0.66
LINC00540-202ENST00000616974 AIPO00170 330 aa10.94□□□□□ -0.66
LINC00540-202ENST00000616974 PDCD6O75340 191 aa10.94□□□□□ -0.66
LINC00540-202ENST00000616974 IFNA2P01563 188 aa10.94□□□□□ -0.66
LINC00540-202ENST00000616974 FUT3P21217 361 aa10.94□□□□□ -0.66
LINC00540-202ENST00000616974 GALP22466 123 aa10.94□□□□□ -0.66
LINC00540-202ENST00000616974 DIAPH2-AS1Q14236 149 aa10.94□□□□□ -0.66
LINC00540-202ENST00000616974 PPP1R35Q8TAP8 253 aa10.94□□□□□ -0.66
LINC00540-202ENST00000616974 MRPL30Q8TCC3 161 aaKnown RBP10.94□□□□□ -0.66
LINC00540-202ENST00000616974 CORO2AQ92828 525 aa10.94□□□□□ -0.66
LINC00540-202ENST00000616974 BARHL1Q9BZE3 327 aa10.94□□□□□ -0.66
LINC00540-202ENST00000616974 CHIAQ9BZP6 476 aa10.94□□□□□ -0.66
LINC00540-202ENST00000616974 ETAA1Q9NY74 926 aa10.94□□□□□ -0.66
LINC00540-202ENST00000616974 A0A075B6Q4 140 aa10.93□□□□□ -0.66
LINC00540-202ENST00000616974 KBTBD11-OT1A0A1B0GTJ5 212 aa10.93□□□□□ -0.66
LINC00540-202ENST00000616974 C12orf77C9JDV5 145 aa10.93□□□□□ -0.66
LINC00540-202ENST00000616974 ARG1P05089 322 aa10.93□□□□□ -0.66
LINC00540-202ENST00000616974 FPR2P25090 351 aa10.93□□□□□ -0.66
LINC00540-202ENST00000616974 BAMBIQ13145 260 aa10.93□□□□□ -0.66
LINC00540-202ENST00000616974 DYNC1I2Q13409 638 aaKnown RBP10.93□□□□□ -0.66
LINC00540-202ENST00000616974 HEPN1Q6WQI6 88 aa10.93□□□□□ -0.66
LINC00540-202ENST00000616974 FAM89BQ8N5H3 189 aa10.93□□□□□ -0.66
LINC00540-202ENST00000616974 DTX3Q8N9I9 347 aa10.93□□□□□ -0.66
LINC00540-202ENST00000616974 OR1L1Q8NH94 360 aa10.93□□□□□ -0.66
LINC00540-202ENST00000616974 LGALS14Q8TCE9 139 aa10.93□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 49.6 ms