RNA–Protein interactions for RNA: ENST00000594243.1

UPF1-202, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 683 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-202ENST00000594243 GLAP06280 429 aa12.24□□□□□ -0.45
UPF1-202ENST00000594243 VSIG8P0DPA2 414 aa12.24□□□□□ -0.45
UPF1-202ENST00000594243 ARSBP15848 533 aa12.24□□□□□ -0.45
UPF1-202ENST00000594243 GZMHP20718 246 aa12.24□□□□□ -0.45
UPF1-202ENST00000594243 FUT3P21217 361 aa12.24□□□□□ -0.45
UPF1-202ENST00000594243 FGF9P31371 208 aaPredicted RBP12.24□□□□□ -0.45
UPF1-202ENST00000594243 IER3P46695 156 aa12.24□□□□□ -0.45
UPF1-202ENST00000594243 RAB12Q6IQ22 244 aa12.24□□□□□ -0.45
UPF1-202ENST00000594243 C16orf87Q6PH81 154 aa12.24□□□□□ -0.45
UPF1-202ENST00000594243 BRICD5Q6PL45 260 aa12.24□□□□□ -0.45
UPF1-202ENST00000594243 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP12.24□□□□□ -0.45
UPF1-202ENST00000594243 PLPPR1Q8TBJ4 325 aa12.24□□□□□ -0.45
UPF1-202ENST00000594243 FAM46BQ96A09 425 aa12.24□□□□□ -0.45
UPF1-202ENST00000594243 ZNF581Q9P0T4 197 aa12.24□□□□□ -0.45
UPF1-202ENST00000594243 RCC2Q9P258 522 aaKnown RBP12.24□□□□□ -0.45
UPF1-202ENST00000594243 STUB1Q9UNE7 303 aa12.24□□□□□ -0.45
UPF1-202ENST00000594243 SSR3Q9UNL2 185 aa12.24□□□□□ -0.45
UPF1-202ENST00000594243 TBL2Q9Y4P3 447 aaKnown RBP12.24□□□□□ -0.45
UPF1-202ENST00000594243 PEX16Q9Y5Y5 336 aa12.24□□□□□ -0.45
UPF1-202ENST00000594243 KBTBD11-OT1A0A1B0GTJ5 212 aa12.23□□□□□ -0.45
UPF1-202ENST00000594243 TMEM30CPA0ZSE6 113 aa12.23□□□□□ -0.45
UPF1-202ENST00000594243 CGB3P0DN86 165 aa12.23□□□□□ -0.45
UPF1-202ENST00000594243 CGB7P0DN87 165 aa12.23□□□□□ -0.45
UPF1-202ENST00000594243 CDK2P24941 298 aa12.23□□□□□ -0.45
UPF1-202ENST00000594243 ACTG1P63261 375 aa12.23□□□□□ -0.45
UPF1-202ENST00000594243 DYNC1I2Q13409 638 aaKnown RBP12.23□□□□□ -0.45
UPF1-202ENST00000594243 NEDD8Q15843 81 aa12.23□□□□□ -0.45
UPF1-202ENST00000594243 RAB11BQ15907 218 aa12.23□□□□□ -0.45
UPF1-202ENST00000594243 C22orf42Q6IC83 251 aa12.23□□□□□ -0.45
UPF1-202ENST00000594243 OR2W3Q7Z3T1 314 aa12.23□□□□□ -0.45
UPF1-202ENST00000594243 RTN4RL2Q86UN3 420 aa12.23□□□□□ -0.45
UPF1-202ENST00000594243 BEND2Q8NDZ0 799 aa12.23□□□□□ -0.45
UPF1-202ENST00000594243 TSPAN14Q8NG11 270 aa12.23□□□□□ -0.45
UPF1-202ENST00000594243 GFI1Q99684 422 aa12.23□□□□□ -0.45
UPF1-202ENST00000594243 CLEC7AQ9BXN2 247 aa12.23□□□□□ -0.45
UPF1-202ENST00000594243 TMEM59Q9BXS4 323 aa12.23□□□□□ -0.45
UPF1-202ENST00000594243 MEGF9Q9H1U4 602 aa12.23□□□□□ -0.45
UPF1-202ENST00000594243 VCX3AQ9NNX9 186 aa12.23□□□□□ -0.45
UPF1-202ENST00000594243 ZNRD1Q9P1U0 126 aa12.23□□□□□ -0.45
UPF1-202ENST00000594243 IGHV2-26A0A0B4J1V2 119 aa12.22□□□□□ -0.45
UPF1-202ENST00000594243 BTBD17A6NE02 478 aa12.22□□□□□ -0.45
UPF1-202ENST00000594243 TMEM14DPA8MWL7 114 aa12.22□□□□□ -0.45
UPF1-202ENST00000594243 CA11O75493 328 aa12.22□□□□□ -0.45
UPF1-202ENST00000594243 MMP23AO75900 390 aa12.22□□□□□ -0.45
UPF1-202ENST00000594243 RAB3BP20337 219 aa12.22□□□□□ -0.45
UPF1-202ENST00000594243 GLP1RP43220 463 aa12.22□□□□□ -0.45
UPF1-202ENST00000594243 RPS27AP62979 156 aaKnown RBP12.22□□□□□ -0.45
UPF1-202ENST00000594243 C17orf58Q2M2W7 97 aa12.22□□□□□ -0.45
UPF1-202ENST00000594243 ZNF626Q68DY1 528 aa12.22□□□□□ -0.45
UPF1-202ENST00000594243 OR10K2Q6IF99 312 aa12.22□□□□□ -0.45
UPF1-202ENST00000594243 ABHD12Q8N2K0 398 aa12.22□□□□□ -0.45
UPF1-202ENST00000594243 OR10A7Q8NGE5 316 aa12.22□□□□□ -0.45
UPF1-202ENST00000594243 OR13A1Q8NGR1 328 aa12.22□□□□□ -0.45
UPF1-202ENST00000594243 MRGPRDQ8TDS7 321 aa12.22□□□□□ -0.45
UPF1-202ENST00000594243 GCDHQ92947 438 aaPredicted RBP12.22□□□□□ -0.45
UPF1-202ENST00000594243 MALSU1Q96EH3 234 aa12.22□□□□□ -0.45
UPF1-202ENST00000594243 NEDD4LQ96PU5 975 aa12.22□□□□□ -0.45
UPF1-202ENST00000594243 URM1Q9BTM9 101 aaKnown RBP12.22□□□□□ -0.45
UPF1-202ENST00000594243 TM2D1Q9BX74 207 aa12.22□□□□□ -0.45
UPF1-202ENST00000594243 TNFRSF19Q9NS68 423 aa12.22□□□□□ -0.45
UPF1-202ENST00000594243 TXNL4BQ9NX01 149 aaKnown RBP12.22□□□□□ -0.45
UPF1-202ENST00000594243 ETAA1Q9NY74 926 aa12.22□□□□□ -0.45
UPF1-202ENST00000594243 STEAP1Q9UHE8 339 aa12.22□□□□□ -0.45
UPF1-202ENST00000594243 TMEM89A2RUT3 159 aa12.21□□□□□ -0.45
UPF1-202ENST00000594243 ODF3BA8MYP8 253 aa12.21□□□□□ -0.45
UPF1-202ENST00000594243 PDCD6O75340 191 aa12.21□□□□□ -0.45
UPF1-202ENST00000594243 IGHV4-59P01825 116 aa12.21□□□□□ -0.45
UPF1-202ENST00000594243 MT-ND4P03905 459 aa12.21□□□□□ -0.45
UPF1-202ENST00000594243 OMGP23515 440 aa12.21□□□□□ -0.45
UPF1-202ENST00000594243 QRFPP83859 136 aa12.21□□□□□ -0.45
UPF1-202ENST00000594243 P2RY14Q15391 338 aa12.21□□□□□ -0.45
UPF1-202ENST00000594243 C2orf76Q3KRA6 126 aa12.21□□□□□ -0.45
UPF1-202ENST00000594243 MINOS1Q5TGZ0 78 aa12.21□□□□□ -0.45
UPF1-202ENST00000594243 PRAMEF5Q5TYX0 476 aa12.21□□□□□ -0.45
UPF1-202ENST00000594243 ZNF497Q6ZNH5 498 aa12.21□□□□□ -0.45
UPF1-202ENST00000594243 OR51D1Q8NGF3 324 aa12.21□□□□□ -0.45
UPF1-202ENST00000594243 OR5R1Q8NH85 324 aa12.21□□□□□ -0.45
UPF1-202ENST00000594243 ZNF596Q8TC21 504 aa12.21□□□□□ -0.45
UPF1-202ENST00000594243 DYRK2Q92630 601 aa12.21□□□□□ -0.45
UPF1-202ENST00000594243 LINC00574Q9H8X3 128 aa12.21□□□□□ -0.45
UPF1-202ENST00000594243 CALYQ9NYX4 217 aa12.21□□□□□ -0.45
UPF1-202ENST00000594243 IDI2-AS1Q9NZ38 188 aa12.21□□□□□ -0.45
UPF1-202ENST00000594243 MINOS1-NBL1R4GNA1 71 aa12.21□□□□□ -0.45
UPF1-202ENST00000594243 A0A087X0M5 115 aa12.2□□□□□ -0.46
UPF1-202ENST00000594243 A0A1B0GX30 115 aa12.2□□□□□ -0.46
UPF1-202ENST00000594243 NPIPB11E5RHQ5 1161 aa12.2□□□□□ -0.46
UPF1-202ENST00000594243 AIPO00170 330 aa12.2□□□□□ -0.46
UPF1-202ENST00000594243 TOR1AO14656 332 aa12.2□□□□□ -0.46
UPF1-202ENST00000594243 ORC5O43913 435 aa12.2□□□□□ -0.46
UPF1-202ENST00000594243 IL1AP01583 271 aa12.2□□□□□ -0.46
UPF1-202ENST00000594243 CRYBA1P05813 215 aa12.2□□□□□ -0.46
UPF1-202ENST00000594243 HKR1P10072 659 aa12.2□□□□□ -0.46
UPF1-202ENST00000594243 CD36P16671 472 aa12.2□□□□□ -0.46
UPF1-202ENST00000594243 CD34P28906 385 aa12.2□□□□□ -0.46
UPF1-202ENST00000594243 PRRX1P54821 245 aa12.2□□□□□ -0.46
UPF1-202ENST00000594243 RPL15P61313 204 aaKnown RBP12.2□□□□□ -0.46
UPF1-202ENST00000594243 UNC119Q13432 240 aa12.2□□□□□ -0.46
UPF1-202ENST00000594243 AANATQ16613 207 aa12.2□□□□□ -0.46
UPF1-202ENST00000594243 HES5Q5TA89 166 aa12.2□□□□□ -0.46
UPF1-202ENST00000594243 SIGIRRQ6IA17 410 aa12.2□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms