RNA–Protein interactions for RNA: ENST00000565228.1

VPS35-206, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 487 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-206ENST00000565228 CSTBP04080 98 aaKnown RBP7.47□□□□□ -1.21
VPS35-206ENST00000565228 CD36P16671 472 aa7.47□□□□□ -1.21
VPS35-206ENST00000565228 CFPP27918 469 aa7.47□□□□□ -1.21
VPS35-206ENST00000565228 SDC2P34741 201 aa7.47□□□□□ -1.21
VPS35-206ENST00000565228 UBE2E1P51965 193 aa7.47□□□□□ -1.21
VPS35-206ENST00000565228 RELBQ01201 579 aa7.47□□□□□ -1.21
VPS35-206ENST00000565228 MEF2CQ06413 473 aaPredicted RBP7.47□□□□□ -1.21
VPS35-206ENST00000565228 DIAPH2-AS1Q14236 149 aa7.47□□□□□ -1.21
VPS35-206ENST00000565228 MPV17LQ2QL34 196 aa7.47□□□□□ -1.21
VPS35-206ENST00000565228 C2orf76Q3KRA6 126 aa7.47□□□□□ -1.21
VPS35-206ENST00000565228 PLAC9Q5JTB6 97 aa7.47□□□□□ -1.21
VPS35-206ENST00000565228 ATAD3CQ5T2N8 411 aa7.47□□□□□ -1.21
VPS35-206ENST00000565228 GPR157Q5UAW9 335 aa7.47□□□□□ -1.21
VPS35-206ENST00000565228 GLT8D1Q68CQ7 371 aa7.47□□□□□ -1.21
VPS35-206ENST00000565228 RAB12Q6IQ22 244 aa7.47□□□□□ -1.21
VPS35-206ENST00000565228 ZNF497Q6ZNH5 498 aa7.47□□□□□ -1.21
VPS35-206ENST00000565228 SLC16A12Q6ZSM3 486 aa7.47□□□□□ -1.21
VPS35-206ENST00000565228 USP43Q70EL4 1123 aa7.47□□□□□ -1.21
VPS35-206ENST00000565228 C6orf201Q7Z4U5 140 aa7.47□□□□□ -1.21
VPS35-206ENST00000565228 FAM89BQ8N5H3 189 aa7.47□□□□□ -1.21
VPS35-206ENST00000565228 OR6M1Q8NGM8 313 aa7.47□□□□□ -1.21
VPS35-206ENST00000565228 RFESDQ8TAC1 157 aa7.47□□□□□ -1.21
VPS35-206ENST00000565228 MRPL30Q8TCC3 161 aaKnown RBP7.47□□□□□ -1.21
VPS35-206ENST00000565228 MRGPRDQ8TDS7 321 aa7.47□□□□□ -1.21
VPS35-206ENST00000565228 CCDC107Q8WV48 283 aa7.47□□□□□ -1.21
VPS35-206ENST00000565228 ZNF714Q96N38 554 aa7.47□□□□□ -1.21
VPS35-206ENST00000565228 HDHD3Q9BSH5 251 aaPredicted RBP7.47□□□□□ -1.21
VPS35-206ENST00000565228 C19orf24Q9BVV8 132 aa7.47□□□□□ -1.21
VPS35-206ENST00000565228 SUCNR1Q9BXA5 334 aa7.47□□□□□ -1.21
VPS35-206ENST00000565228 LINC00574Q9H8X3 128 aa7.47□□□□□ -1.21
VPS35-206ENST00000565228 TNFRSF19Q9NS68 423 aa7.47□□□□□ -1.21
VPS35-206ENST00000565228 ELF5Q9UKW6 265 aaPredicted RBP7.47□□□□□ -1.21
VPS35-206ENST00000565228 A0A087WXM4 84 aa7.46□□□□□ -1.22
VPS35-206ENST00000565228 MEIKINA0A087WXM9 373 aa7.46□□□□□ -1.22
VPS35-206ENST00000565228 IGHV2-26A0A0B4J1V2 119 aa7.46□□□□□ -1.22
VPS35-206ENST00000565228 hADV38S2A0JD32 116 aa7.46□□□□□ -1.22
VPS35-206ENST00000565228 IFITM5A6NNB3 132 aa7.46□□□□□ -1.22
VPS35-206ENST00000565228 ARL6IP5O75915 188 aa7.46□□□□□ -1.22
VPS35-206ENST00000565228 BPNT1O95861 308 aa7.46□□□□□ -1.22
VPS35-206ENST00000565228 PAHP00439 452 aa7.46□□□□□ -1.22
VPS35-206ENST00000565228 TFAP2AP05549 437 aa7.46□□□□□ -1.22
VPS35-206ENST00000565228 RCC1P18754 421 aaPredicted RBP7.46□□□□□ -1.22
VPS35-206ENST00000565228 GALP22466 123 aa7.46□□□□□ -1.22
VPS35-206ENST00000565228 CDK2P24941 298 aa7.46□□□□□ -1.22
VPS35-206ENST00000565228 IER3P46695 156 aa7.46□□□□□ -1.22
VPS35-206ENST00000565228 RAB13P51153 203 aa7.46□□□□□ -1.22
VPS35-206ENST00000565228 LSM3P62310 102 aaKnown RBP7.46□□□□□ -1.22
VPS35-206ENST00000565228 RAB11BQ15907 218 aa7.46□□□□□ -1.22
VPS35-206ENST00000565228 ZNF626Q68DY1 528 aa7.46□□□□□ -1.22
VPS35-206ENST00000565228 SLC35E4Q6ICL7 350 aa7.46□□□□□ -1.22
VPS35-206ENST00000565228 FIP1L1Q6UN15 594 aaKnown RBP7.46□□□□□ -1.22
VPS35-206ENST00000565228 CCBE1Q6UXH8 406 aaPredicted RBP7.46□□□□□ -1.22
VPS35-206ENST00000565228 OR11H6Q8NGC7 330 aa7.46□□□□□ -1.22
VPS35-206ENST00000565228 OR4P4Q8NGL7 312 aa7.46□□□□□ -1.22
VPS35-206ENST00000565228 OR13F1Q8NGS4 319 aa7.46□□□□□ -1.22
VPS35-206ENST00000565228 OR5H6Q8NGV6 325 aa7.46□□□□□ -1.22
VPS35-206ENST00000565228 OR4K15Q8NH41 348 aa7.46□□□□□ -1.22
VPS35-206ENST00000565228 FAM3DQ96BQ1 224 aa7.46□□□□□ -1.22
VPS35-206ENST00000565228 CPNE2Q96FN4 548 aaPredicted RBP7.46□□□□□ -1.22
VPS35-206ENST00000565228 KIRREL1Q96J84 757 aa7.46□□□□□ -1.22
VPS35-206ENST00000565228 FAAP24Q9BTP7 215 aa7.46□□□□□ -1.22
VPS35-206ENST00000565228 CHIAQ9BZP6 476 aa7.46□□□□□ -1.22
VPS35-206ENST00000565228 UBE2J1Q9Y385 318 aaPredicted RBP7.46□□□□□ -1.22
VPS35-206ENST00000565228 PEX16Q9Y5Y5 336 aa7.46□□□□□ -1.22
VPS35-206ENST00000565228 SESN1Q9Y6P5 492 aa7.46□□□□□ -1.22
VPS35-206ENST00000565228 A0A087X0M5 115 aa7.45□□□□□ -1.22
VPS35-206ENST00000565228 IGHV3-43A0A0B4J1X8 118 aa7.45□□□□□ -1.22
VPS35-206ENST00000565228 LOC100506127A0A0U1RQW1 187 aa7.45□□□□□ -1.22
VPS35-206ENST00000565228 KBTBD11-OT1A0A1B0GTJ5 212 aa7.45□□□□□ -1.22
VPS35-206ENST00000565228 A0A1B0GX30 115 aa7.45□□□□□ -1.22
VPS35-206ENST00000565228 A0A1W2PPE3 182 aa7.45□□□□□ -1.22
VPS35-206ENST00000565228 MEIOCA2RUB1 952 aa7.45□□□□□ -1.22
VPS35-206ENST00000565228 C12orf77C9JDV5 145 aa7.45□□□□□ -1.22
VPS35-206ENST00000565228 LY6LH3BQJ8 138 aa7.45□□□□□ -1.22
VPS35-206ENST00000565228 SLC31A2O15432 143 aa7.45□□□□□ -1.22
VPS35-206ENST00000565228 ZNF780AO75290 641 aaPredicted RBP7.45□□□□□ -1.22
VPS35-206ENST00000565228 PDCD6O75340 191 aa7.45□□□□□ -1.22
VPS35-206ENST00000565228 CLPXO76031 633 aa7.45□□□□□ -1.22
VPS35-206ENST00000565228 IFNA2P01563 188 aa7.45□□□□□ -1.22
VPS35-206ENST00000565228 IGLV1-47P01700 117 aa7.45□□□□□ -1.22
VPS35-206ENST00000565228 IGHV3-43DP0DP04 118 aa7.45□□□□□ -1.22
VPS35-206ENST00000565228 SNRPBP14678 240 aaKnown RBP7.45□□□□□ -1.22
VPS35-206ENST00000565228 RAB3BP20337 219 aa7.45□□□□□ -1.22
VPS35-206ENST00000565228 FPR2P25090 351 aa7.45□□□□□ -1.22
VPS35-206ENST00000565228 GLP1RP43220 463 aa7.45□□□□□ -1.22
VPS35-206ENST00000565228 ALDH3B2P48448 385 aa7.45□□□□□ -1.22
VPS35-206ENST00000565228 LOXL3P58215 753 aa7.45□□□□□ -1.22
VPS35-206ENST00000565228 NCS1P62166 190 aa7.45□□□□□ -1.22
VPS35-206ENST00000565228 MXD1Q05195 221 aa7.45□□□□□ -1.22
VPS35-206ENST00000565228 BAMBIQ13145 260 aa7.45□□□□□ -1.22
VPS35-206ENST00000565228 LTC4SQ16873 150 aa7.45□□□□□ -1.22
VPS35-206ENST00000565228 HEPN1Q6WQI6 88 aa7.45□□□□□ -1.22
VPS35-206ENST00000565228 LINC00596Q86U02 117 aa7.45□□□□□ -1.22
VPS35-206ENST00000565228 LDLRAD3Q86YD5 345 aa7.45□□□□□ -1.22
VPS35-206ENST00000565228 CMTM4Q8IZR5 234 aa7.45□□□□□ -1.22
VPS35-206ENST00000565228 OR1L1Q8NH94 360 aa7.45□□□□□ -1.22
VPS35-206ENST00000565228 THRSPQ92748 146 aa7.45□□□□□ -1.22
VPS35-206ENST00000565228 MRPS24Q96EL2 167 aaKnown RBP7.45□□□□□ -1.22
VPS35-206ENST00000565228 FUNDC2Q9BWH2 189 aa7.45□□□□□ -1.22
VPS35-206ENST00000565228 TMEM59Q9BXS4 323 aa7.45□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms