RNA–Protein interactions for RNA: ENST00000558285.5

USP3-208, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best) BASIC

Gene USP3, Length 1,742 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-208ENST00000558285 CRYBA1P05813 215 aa7.19□□□□□ -1.26
USP3-208ENST00000558285 S100A9P06702 114 aaKnown RBP7.19□□□□□ -1.26
USP3-208ENST00000558285 CHRM2P08172 466 aa7.19□□□□□ -1.26
USP3-208ENST00000558285 CPEP16870 476 aa7.19□□□□□ -1.26
USP3-208ENST00000558285 GABRB1P18505 474 aa7.19□□□□□ -1.26
USP3-208ENST00000558285 AKR1D1P51857 326 aa7.19□□□□□ -1.26
USP3-208ENST00000558285 MTCP1P56278 107 aa7.19□□□□□ -1.26
USP3-208ENST00000558285 GMFBP60983 142 aa7.19□□□□□ -1.26
USP3-208ENST00000558285 FGF12P61328 243 aa7.19□□□□□ -1.26
USP3-208ENST00000558285 ZNF85Q03923 595 aa7.19□□□□□ -1.26
USP3-208ENST00000558285 ST3GAL4Q11206 333 aa7.19□□□□□ -1.26
USP3-208ENST00000558285 MLLT11Q13015 90 aaPredicted RBP7.19□□□□□ -1.26
USP3-208ENST00000558285 ODF4Q2M2E3 257 aa7.19□□□□□ -1.26
USP3-208ENST00000558285 ARSJQ5FYB0 599 aaPredicted RBP7.19□□□□□ -1.26
USP3-208ENST00000558285 MZT2AQ6P582 158 aa7.19□□□□□ -1.26
USP3-208ENST00000558285 LYPD2Q6UXB3 125 aa7.19□□□□□ -1.26
USP3-208ENST00000558285 C12orf54Q6X4T0 127 aa7.19□□□□□ -1.26
USP3-208ENST00000558285 ZNF788Q6ZQV5 615 aa7.19□□□□□ -1.26
USP3-208ENST00000558285 C9orf139Q6ZV77 190 aa7.19□□□□□ -1.26
USP3-208ENST00000558285 WDR86Q86TI4 376 aa7.19□□□□□ -1.26
USP3-208ENST00000558285 SERPINA12Q8IW75 414 aa7.19□□□□□ -1.26
USP3-208ENST00000558285 C11orf53Q8IXP5 236 aa7.19□□□□□ -1.26
USP3-208ENST00000558285 Q8N402 240 aa7.19□□□□□ -1.26
USP3-208ENST00000558285 RBM14Q96PK6 669 aaKnown RBP7.19□□□□□ -1.26
USP3-208ENST00000558285 SLC6A7Q99884 636 aa7.19□□□□□ -1.26
USP3-208ENST00000558285 C7orf50Q9BRJ6 194 aaKnown RBP7.19□□□□□ -1.26
USP3-208ENST00000558285 JAM3Q9BX67 310 aa7.19□□□□□ -1.26
USP3-208ENST00000558285 MIXL1Q9H2W2 232 aa7.19□□□□□ -1.26
USP3-208ENST00000558285 GHITMQ9H3K2 345 aa7.19□□□□□ -1.26
USP3-208ENST00000558285 ISYNA1Q9NPH2 558 aa7.19□□□□□ -1.26
USP3-208ENST00000558285 BABAM2Q9NXR7 383 aa7.19□□□□□ -1.26
USP3-208ENST00000558285 OPN4Q9UHM6 478 aa7.19□□□□□ -1.26
USP3-208ENST00000558285 NUBP2Q9Y5Y2 271 aa7.19□□□□□ -1.26
USP3-208ENST00000558285 YLPM1P49750 1951 aaKnown RBP7.19□□□□□ -1.26
USP3-208ENST00000558285 NIPBLQ6KC79 2804 aaeCLIP7.19□□□□□ -1.26
USP3-208ENST00000558285 TRAV40A0A0B4J280 105 aa7.18□□□□□ -1.26
USP3-208ENST00000558285 TRBV2A0A0J9YWF9 115 aa7.18□□□□□ -1.26
USP3-208ENST00000558285 A0A1B0GTI1 187 aa7.18□□□□□ -1.26
USP3-208ENST00000558285 PGA5P0DJD9 388 aa7.18□□□□□ -1.26
USP3-208ENST00000558285 LORP23490 312 aaPredicted RBP7.18□□□□□ -1.26
USP3-208ENST00000558285 MPZP25189 248 aa7.18□□□□□ -1.26
USP3-208ENST00000558285 VEGFCP49767 419 aa7.18□□□□□ -1.26
USP3-208ENST00000558285 OR12D2P58182 307 aa7.18□□□□□ -1.26
USP3-208ENST00000558285 FCN2Q15485 313 aa7.18□□□□□ -1.26
USP3-208ENST00000558285 SSX1Q16384 188 aa7.18□□□□□ -1.26
USP3-208ENST00000558285 LGALSLQ3ZCW2 172 aaPredicted RBP7.18□□□□□ -1.26
USP3-208ENST00000558285 SPIN3Q5JUX0 258 aa7.18□□□□□ -1.26
USP3-208ENST00000558285 RPL22L1Q6P5R6 122 aaKnown RBP7.18□□□□□ -1.26
USP3-208ENST00000558285 ZNF841Q6ZN19 808 aa7.18□□□□□ -1.26
USP3-208ENST00000558285 ACP7Q6ZNF0 438 aa7.18□□□□□ -1.26
USP3-208ENST00000558285 TMEM86BQ8N661 226 aa7.18□□□□□ -1.26
USP3-208ENST00000558285 TRMT10AQ8TBZ6 339 aaKnown RBP7.18□□□□□ -1.26
USP3-208ENST00000558285 GPR148Q8TDV2 347 aa7.18□□□□□ -1.26
USP3-208ENST00000558285 SCARB1Q8WTV0 552 aa7.18□□□□□ -1.26
USP3-208ENST00000558285 SDSLQ96GA7 329 aa7.18□□□□□ -1.26
USP3-208ENST00000558285 S100A13Q99584 98 aa7.18□□□□□ -1.26
USP3-208ENST00000558285 DPAGT1Q9H3H5 408 aa7.18□□□□□ -1.26
USP3-208ENST00000558285 RNF167Q9H6Y7 350 aa7.18□□□□□ -1.26
USP3-208ENST00000558285 METTL8Q9H825 291 aaKnown RBP7.18□□□□□ -1.26
USP3-208ENST00000558285 FGF20Q9NP95 211 aaPredicted RBP7.18□□□□□ -1.26
USP3-208ENST00000558285 SNTG1Q9NSN8 517 aa7.18□□□□□ -1.26
USP3-208ENST00000558285 CLDN34H7C241 214 aa7.18□□□□□ -1.26
USP3-208ENST00000558285 J3QRE1 110 aa7.18□□□□□ -1.26
USP3-208ENST00000558285 MAGEB4O15481 346 aaPredicted RBP7.18□□□□□ -1.26
USP3-208ENST00000558285 MPC2O95563 127 aa7.18□□□□□ -1.26
USP3-208ENST00000558285 FSHBP01225 129 aa7.18□□□□□ -1.26
USP3-208ENST00000558285 HCKP08631 526 aa7.18□□□□□ -1.26
USP3-208ENST00000558285 HSMCR30P0CW71 290 aa7.18□□□□□ -1.26
USP3-208ENST00000558285 EGR1P18146 543 aa7.18□□□□□ -1.26
USP3-208ENST00000558285 ATF1P18846 271 aa7.18□□□□□ -1.26
USP3-208ENST00000558285 PRDX2P32119 198 aa7.18□□□□□ -1.26
USP3-208ENST00000558285 RPL35P42766 123 aaKnown RBP7.18□□□□□ -1.26
USP3-208ENST00000558285 RPL15P61313 204 aaKnown RBP7.18□□□□□ -1.26
USP3-208ENST00000558285 FOXL1Q12952 345 aa7.18□□□□□ -1.26
USP3-208ENST00000558285 MED22Q15528 200 aa7.18□□□□□ -1.26
USP3-208ENST00000558285 PLA1AQ53H76 456 aa7.18□□□□□ -1.26
USP3-208ENST00000558285 SSX6Q7RTT6 188 aa7.18□□□□□ -1.26
USP3-208ENST00000558285 LHFPL3Q86UP9 236 aa7.18□□□□□ -1.26
USP3-208ENST00000558285 CALHM1Q8IU99 346 aa7.18□□□□□ -1.26
USP3-208ENST00000558285 OR52I1Q8NGK6 324 aa7.18□□□□□ -1.26
USP3-208ENST00000558285 C8orf46Q8TAG6 207 aa7.18□□□□□ -1.26
USP3-208ENST00000558285 ACOT12Q8WYK0 555 aa7.18□□□□□ -1.26
USP3-208ENST00000558285 ST8SIA2Q92186 375 aa7.18□□□□□ -1.26
USP3-208ENST00000558285 FGGYQ96C11 551 aa7.18□□□□□ -1.26
USP3-208ENST00000558285 PELI1Q96FA3 418 aa7.18□□□□□ -1.26
USP3-208ENST00000558285 NRIP2Q9BQI9 281 aa7.18□□□□□ -1.26
USP3-208ENST00000558285 DCTN5Q9BTE1 182 aa7.18□□□□□ -1.26
USP3-208ENST00000558285 OR51M1Q9H341 326 aa7.18□□□□□ -1.26
USP3-208ENST00000558285 ZCCHC4Q9H5U6 513 aa7.18□□□□□ -1.26
USP3-208ENST00000558285 SEBOXQ9HB31 216 aaPredicted RBP7.18□□□□□ -1.26
USP3-208ENST00000558285 FRRS1LQ9P0K9 344 aa7.18□□□□□ -1.26
USP3-208ENST00000558285 CTSZQ9UBR2 303 aa7.18□□□□□ -1.26
USP3-208ENST00000558285 SF3B6Q9Y3B4 125 aaKnown RBP7.18□□□□□ -1.26
USP3-208ENST00000558285 A0A1B0GUS0 222 aa7.17□□□□□ -1.26
USP3-208ENST00000558285 PRR32B1ATL7 298 aa7.17□□□□□ -1.26
USP3-208ENST00000558285 SULT1C2O00338 296 aa7.17□□□□□ -1.26
USP3-208ENST00000558285 TNFRSF13BO14836 293 aaPredicted RBP7.17□□□□□ -1.26
USP3-208ENST00000558285 SC5DO75845 299 aa7.17□□□□□ -1.26
USP3-208ENST00000558285 FBP1P09467 338 aa7.17□□□□□ -1.26
USP3-208ENST00000558285 SULT1A3P0DMM9 295 aa7.17□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 53.5 ms