RNA–Protein interactions for RNA: ENST00000556767.1

CCDC88C-212, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 676 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-212ENST00000556767 NOTOA8MTQ0 251 aa9.36□□□□□ -0.91
CCDC88C-212ENST00000556767 AIPO00170 330 aa9.36□□□□□ -0.91
CCDC88C-212ENST00000556767 PDCD6O75340 191 aa9.36□□□□□ -0.91
CCDC88C-212ENST00000556767 CLPXO76031 633 aa9.36□□□□□ -0.91
CCDC88C-212ENST00000556767 PAHP00439 452 aa9.36□□□□□ -0.91
CCDC88C-212ENST00000556767 CLEC2LP0C7M8 214 aa9.36□□□□□ -0.91
CCDC88C-212ENST00000556767 SLC2A2P11168 524 aaPredicted RBP9.36□□□□□ -0.91
CCDC88C-212ENST00000556767 OMGP23515 440 aa9.36□□□□□ -0.91
CCDC88C-212ENST00000556767 CDK2P24941 298 aa9.36□□□□□ -0.91
CCDC88C-212ENST00000556767 BLVRBP30043 206 aaPredicted RBP9.36□□□□□ -0.91
CCDC88C-212ENST00000556767 UBE2E1P51965 193 aa9.36□□□□□ -0.91
CCDC88C-212ENST00000556767 LGALS4P56470 323 aa9.36□□□□□ -0.91
CCDC88C-212ENST00000556767 QRFPP83859 136 aa9.36□□□□□ -0.91
CCDC88C-212ENST00000556767 BAMBIQ13145 260 aa9.36□□□□□ -0.91
CCDC88C-212ENST00000556767 DYNC1I2Q13409 638 aaKnown RBP9.36□□□□□ -0.91
CCDC88C-212ENST00000556767 LTC4SQ16873 150 aa9.36□□□□□ -0.91
CCDC88C-212ENST00000556767 SIGIRRQ6IA17 410 aa9.36□□□□□ -0.91
CCDC88C-212ENST00000556767 GDPGP1Q6ZNW5 385 aa9.36□□□□□ -0.91
CCDC88C-212ENST00000556767 C9orf139Q6ZV77 190 aa9.36□□□□□ -0.91
CCDC88C-212ENST00000556767 PIP4P2Q8N4L2 257 aa9.36□□□□□ -0.91
CCDC88C-212ENST00000556767 OR13A1Q8NGR1 328 aa9.36□□□□□ -0.91
CCDC88C-212ENST00000556767 OR13D1Q8NGV5 346 aa9.36□□□□□ -0.91
CCDC88C-212ENST00000556767 DYRK2Q92630 601 aa9.36□□□□□ -0.91
CCDC88C-212ENST00000556767 CORO2AQ92828 525 aa9.36□□□□□ -0.91
CCDC88C-212ENST00000556767 ZNF48Q96MX3 618 aaPredicted RBP9.36□□□□□ -0.91
CCDC88C-212ENST00000556767 TM2D1Q9BX74 207 aa9.36□□□□□ -0.91
CCDC88C-212ENST00000556767 UNKLQ9H9P5 680 aaKnown RBP9.36□□□□□ -0.91
CCDC88C-212ENST00000556767 LIN7BQ9HAP6 207 aa9.36□□□□□ -0.91
CCDC88C-212ENST00000556767 TAS2R3Q9NYW6 316 aa9.36□□□□□ -0.91
CCDC88C-212ENST00000556767 RCC2Q9P258 522 aaKnown RBP9.36□□□□□ -0.91
CCDC88C-212ENST00000556767 DAPK2Q9UIK4 370 aa9.36□□□□□ -0.91
CCDC88C-212ENST00000556767 TRAPPC2LQ9UL33 140 aa9.36□□□□□ -0.91
CCDC88C-212ENST00000556767 SESN1Q9Y6P5 492 aa9.36□□□□□ -0.91
CCDC88C-212ENST00000556767 DSCAML1Q8TD84 2053 aa9.36□□□□□ -0.91
CCDC88C-212ENST00000556767 ANK3Q12955 4377 aaKnown RBP9.36□□□□□ -0.91
CCDC88C-212ENST00000556767 KIAA2026Q5HYC2 2103 aa9.35□□□□□ -0.91
CCDC88C-212ENST00000556767 A0A0A6YYJ9 748 aa9.35□□□□□ -0.91
CCDC88C-212ENST00000556767 FAM172BPA6NC97 362 aa9.35□□□□□ -0.91
CCDC88C-212ENST00000556767 MMP23AO75900 390 aa9.35□□□□□ -0.91
CCDC88C-212ENST00000556767 VENTXO95231 258 aa9.35□□□□□ -0.91
CCDC88C-212ENST00000556767 RBP4P02753 201 aa9.35□□□□□ -0.91
CCDC88C-212ENST00000556767 ARG1P05089 322 aa9.35□□□□□ -0.91
CCDC88C-212ENST00000556767 NFYBP25208 207 aa9.35□□□□□ -0.91
CCDC88C-212ENST00000556767 SAA4P35542 130 aa9.35□□□□□ -0.91
CCDC88C-212ENST00000556767 VEGFCP49767 419 aa9.35□□□□□ -0.91
CCDC88C-212ENST00000556767 HILS1P60008 231 aa9.35□□□□□ -0.91
CCDC88C-212ENST00000556767 OR52W1Q6IF63 320 aa9.35□□□□□ -0.91
CCDC88C-212ENST00000556767 HCP5Q6MZN7 132 aa9.35□□□□□ -0.91
CCDC88C-212ENST00000556767 C6orf201Q7Z4U5 140 aa9.35□□□□□ -0.91
CCDC88C-212ENST00000556767 NR2C2APQ86WQ0 139 aa9.35□□□□□ -0.91
CCDC88C-212ENST00000556767 OR4K15Q8NH41 348 aa9.35□□□□□ -0.91
CCDC88C-212ENST00000556767 RFESDQ8TAC1 157 aa9.35□□□□□ -0.91
CCDC88C-212ENST00000556767 DUX5Q96PT3 197 aa9.35□□□□□ -0.91
CCDC88C-212ENST00000556767 FAAP24Q9BTP7 215 aa9.35□□□□□ -0.91
CCDC88C-212ENST00000556767 FUNDC2Q9BWH2 189 aa9.35□□□□□ -0.91
CCDC88C-212ENST00000556767 LPAR5Q9H1C0 372 aa9.35□□□□□ -0.91
CCDC88C-212ENST00000556767 TMEM133Q9H2Q1 129 aa9.35□□□□□ -0.91
CCDC88C-212ENST00000556767 NCOR1P1Q9H4R4 102 aa9.35□□□□□ -0.91
CCDC88C-212ENST00000556767 TNFRSF19Q9NS68 423 aa9.35□□□□□ -0.91
CCDC88C-212ENST00000556767 PLEKHJ1Q9NW61 149 aa9.35□□□□□ -0.91
CCDC88C-212ENST00000556767 CALYQ9NYX4 217 aa9.35□□□□□ -0.91
CCDC88C-212ENST00000556767 RAB22AQ9UL26 194 aa9.35□□□□□ -0.91
CCDC88C-212ENST00000556767 JMJD1CQ15652 2540 aa9.34□□□□□ -0.91
CCDC88C-212ENST00000556767 A0A0A6YYD4 124 aa9.34□□□□□ -0.91
CCDC88C-212ENST00000556767 KBTBD11-OT1A0A1B0GTJ5 212 aa9.34□□□□□ -0.91
CCDC88C-212ENST00000556767 TRIM77I1YAP6 450 aa9.34□□□□□ -0.91
CCDC88C-212ENST00000556767 SOCS1O15524 211 aa9.34□□□□□ -0.91
CCDC88C-212ENST00000556767 MT-ND4P03905 459 aa9.34□□□□□ -0.91
CCDC88C-212ENST00000556767 GLAP06280 429 aa9.34□□□□□ -0.91
CCDC88C-212ENST00000556767 CHATP28329 748 aa9.34□□□□□ -0.91
CCDC88C-212ENST00000556767 SSTR5P35346 364 aa9.34□□□□□ -0.91
CCDC88C-212ENST00000556767 TGFBR1P36897 503 aa9.34□□□□□ -0.91
CCDC88C-212ENST00000556767 GDNFP39905 211 aa9.34□□□□□ -0.91
CCDC88C-212ENST00000556767 PLA2G7Q13093 441 aa9.34□□□□□ -0.91
CCDC88C-212ENST00000556767 C17orf58Q2M2W7 97 aa9.34□□□□□ -0.91
CCDC88C-212ENST00000556767 IDNKQ5T6J7 187 aa9.34□□□□□ -0.91
CCDC88C-212ENST00000556767 SFXN4Q6P4A7 337 aa9.34□□□□□ -0.91
CCDC88C-212ENST00000556767 HEPN1Q6WQI6 88 aa9.34□□□□□ -0.91
CCDC88C-212ENST00000556767 ZNF497Q6ZNH5 498 aa9.34□□□□□ -0.91
CCDC88C-212ENST00000556767 USP43Q70EL4 1123 aa9.34□□□□□ -0.91
CCDC88C-212ENST00000556767 GPR141Q7Z602 305 aa9.34□□□□□ -0.91
CCDC88C-212ENST00000556767 OR56B1Q8NGI3 324 aa9.34□□□□□ -0.91
CCDC88C-212ENST00000556767 OR13F1Q8NGS4 319 aa9.34□□□□□ -0.91
CCDC88C-212ENST00000556767 UBALD1Q8TB05 177 aa9.34□□□□□ -0.91
CCDC88C-212ENST00000556767 SETD6Q8TBK2 473 aa9.34□□□□□ -0.91
CCDC88C-212ENST00000556767 CYYR1Q96J86 154 aa9.34□□□□□ -0.91
CCDC88C-212ENST00000556767 SULT4A1Q9BR01 284 aa9.34□□□□□ -0.91
CCDC88C-212ENST00000556767 CLEC7AQ9BXN2 247 aa9.34□□□□□ -0.91
CCDC88C-212ENST00000556767 CHMP1AQ9HD42 196 aaPredicted RBP9.34□□□□□ -0.91
CCDC88C-212ENST00000556767 IGHV2-26A0A0B4J1V2 119 aa9.33□□□□□ -0.92
CCDC88C-212ENST00000556767 METTL21EPA6NDL7 271 aa9.33□□□□□ -0.92
CCDC88C-212ENST00000556767 DNAJC9-AS1A6NH13 148 aa9.33□□□□□ -0.92
CCDC88C-212ENST00000556767 RNF212BA8MTL3 300 aa9.33□□□□□ -0.92
CCDC88C-212ENST00000556767 TOR1AO14656 332 aa9.33□□□□□ -0.92
CCDC88C-212ENST00000556767 LDLRAD4O15165 306 aa9.33□□□□□ -0.92
CCDC88C-212ENST00000556767 HOXA3O43365 443 aaPredicted RBP9.33□□□□□ -0.92
CCDC88C-212ENST00000556767 CA11O75493 328 aa9.33□□□□□ -0.92
CCDC88C-212ENST00000556767 IL1AP01583 271 aa9.33□□□□□ -0.92
CCDC88C-212ENST00000556767 FBP1P09467 338 aa9.33□□□□□ -0.92
CCDC88C-212ENST00000556767 SNRPBP14678 240 aaKnown RBP9.33□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms