RNA–Protein interactions for RNA: ENST00000534296.5

CD44-238, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-238ENST00000534296 FOXA1P55317 472 aa1.34□□□□□ -2.19
CD44-238ENST00000534296 RHOAP61586 193 aa1.34□□□□□ -2.19
CD44-238ENST00000534296 CD164Q04900 197 aa1.34□□□□□ -2.19
CD44-238ENST00000534296 BAXQ07812 192 aa1.34□□□□□ -2.19
CD44-238ENST00000534296 SYCP1Q15431 976 aa1.34□□□□□ -2.19
CD44-238ENST00000534296 SLC9A3R2Q15599 337 aa1.34□□□□□ -2.19
CD44-238ENST00000534296 OR4D1Q15615 310 aa1.34□□□□□ -2.19
CD44-238ENST00000534296 MAPK14Q16539 360 aa1.34□□□□□ -2.19
CD44-238ENST00000534296 PSG3Q16557 428 aa1.34□□□□□ -2.19
CD44-238ENST00000534296 PYCR3Q53H96 274 aa1.34□□□□□ -2.19
CD44-238ENST00000534296 GLYATQ6IB77 296 aa1.34□□□□□ -2.19
CD44-238ENST00000534296 LAIR2Q6ISS4 152 aa1.34□□□□□ -2.19
CD44-238ENST00000534296 FAM183BPQ6ZVS7 135 aa1.34□□□□□ -2.19
CD44-238ENST00000534296 TMEM25Q86YD3 366 aa1.34□□□□□ -2.19
CD44-238ENST00000534296 SLC13A5Q86YT5 568 aaPredicted RBP1.34□□□□□ -2.19
CD44-238ENST00000534296 LINC00337Q8N6G1 96 aa1.34□□□□□ -2.19
CD44-238ENST00000534296 MFSD8Q8NHS3 518 aa1.34□□□□□ -2.19
CD44-238ENST00000534296 FAM45AQ8TCE6 357 aa1.34□□□□□ -2.19
CD44-238ENST00000534296 CCL17Q92583 94 aa1.34□□□□□ -2.19
CD44-238ENST00000534296 LRRC45Q96CN5 670 aa1.34□□□□□ -2.19
CD44-238ENST00000534296 CMBLQ96DG6 245 aa1.34□□□□□ -2.19
CD44-238ENST00000534296 EBNA1BP2Q99848 306 aaKnown RBP1.34□□□□□ -2.19
CD44-238ENST00000534296 ARL6Q9H0F7 186 aa1.34□□□□□ -2.19
CD44-238ENST00000534296 NXT1Q9UKK6 140 aaKnown RBP1.34□□□□□ -2.19
CD44-238ENST00000534296 BTRCQ9Y297 605 aa1.34□□□□□ -2.19
CD44-238ENST00000534296 SBDSQ9Y3A5 250 aaKnown RBP eCLIP1.34□□□□□ -2.19
CD44-238ENST00000534296 FADS3Q9Y5Q0 445 aa1.34□□□□□ -2.19
CD44-238ENST00000534296 MAP3K19Q56UN5 1328 aa1.34□□□□□ -2.2
CD44-238ENST00000534296 SDK2Q58EX2 2172 aa1.34□□□□□ -2.2
CD44-238ENST00000534296 HMCN1Q96RW7 5635 aa1.34□□□□□ -2.2
CD44-238ENST00000534296 TRBV24-1A0A075B6N3 115 aa1.33□□□□□ -2.2
CD44-238ENST00000534296 FAM183AA6NL82 134 aa1.33□□□□□ -2.2
CD44-238ENST00000534296 EFCAB9A8MZ26 197 aa1.33□□□□□ -2.2
CD44-238ENST00000534296 B4DEV8 164 aa1.33□□□□□ -2.2
CD44-238ENST00000534296 F5H5T6 163 aa1.33□□□□□ -2.2
CD44-238ENST00000534296 H3BMM0 161 aa1.33□□□□□ -2.2
CD44-238ENST00000534296 TCF21O43680 179 aa1.33□□□□□ -2.2
CD44-238ENST00000534296 SH2D1AO60880 128 aa1.33□□□□□ -2.2
CD44-238ENST00000534296 PDCD6O75340 191 aa1.33□□□□□ -2.2
CD44-238ENST00000534296 IGKV1D-33P01593 117 aa1.33□□□□□ -2.2
CD44-238ENST00000534296 IGKV1-33P01594 117 aa1.33□□□□□ -2.2
CD44-238ENST00000534296 CTSGP08311 255 aa1.33□□□□□ -2.2
CD44-238ENST00000534296 FBP1P09467 338 aa1.33□□□□□ -2.2
CD44-238ENST00000534296 OR12D1P0DN82 309 aa1.33□□□□□ -2.2
CD44-238ENST00000534296 PSKH1P11801 424 aa1.33□□□□□ -2.2
CD44-238ENST00000534296 ZNF3P17036 446 aa1.33□□□□□ -2.2
CD44-238ENST00000534296 M6PRP20645 277 aa1.33□□□□□ -2.2
CD44-238ENST00000534296 SYT1P21579 422 aa1.33□□□□□ -2.2
CD44-238ENST00000534296 PSMA1P25786 263 aaKnown RBP1.33□□□□□ -2.2
CD44-238ENST00000534296 GABARAPL2P60520 117 aa1.33□□□□□ -2.2
CD44-238ENST00000534296 RAB2AP61019 212 aa1.33□□□□□ -2.2
CD44-238ENST00000534296 TSPAN31Q12999 210 aa1.33□□□□□ -2.2
CD44-238ENST00000534296 PAFAH1B3Q15102 231 aaKnown RBP1.33□□□□□ -2.2
CD44-238ENST00000534296 ACSBG2Q5FVE4 666 aa1.33□□□□□ -2.2
CD44-238ENST00000534296 ELP2Q6IA86 826 aa1.33□□□□□ -2.2
CD44-238ENST00000534296 HCP5Q6MZN7 132 aa1.33□□□□□ -2.2
CD44-238ENST00000534296 TCF23Q7RTU1 214 aa1.33□□□□□ -2.2
CD44-238ENST00000534296 KRTAP13-1Q8IUC0 172 aa1.33□□□□□ -2.2
CD44-238ENST00000534296 SLC25A45Q8N413 288 aa1.33□□□□□ -2.2
CD44-238ENST00000534296 OR2M3Q8NG83 312 aa1.33□□□□□ -2.2
CD44-238ENST00000534296 TNFRSF14Q92956 283 aa1.33□□□□□ -2.2
CD44-238ENST00000534296 UBE2WQ96B02 151 aa1.33□□□□□ -2.2
CD44-238ENST00000534296 DDIT4LQ96D03 193 aa1.33□□□□□ -2.2
CD44-238ENST00000534296 REEP6Q96HR9 211 aa1.33□□□□□ -2.2
CD44-238ENST00000534296 MED10Q9BTT4 135 aa1.33□□□□□ -2.2
CD44-238ENST00000534296 NDEL1Q9GZM8 345 aa1.33□□□□□ -2.2
CD44-238ENST00000534296 FBXL15Q9H469 300 aa1.33□□□□□ -2.2
CD44-238ENST00000534296 TAS2R13Q9NYV9 303 aa1.33□□□□□ -2.2
CD44-238ENST00000534296 TAS2R9Q9NYW1 312 aa1.33□□□□□ -2.2
CD44-238ENST00000534296 RBM12B-AS1Q9P1G2 102 aa1.33□□□□□ -2.2
CD44-238ENST00000534296 FIS1Q9Y3D6 152 aa1.33□□□□□ -2.2
CD44-238ENST00000534296 MMACHCQ9Y4U1 282 aa1.33□□□□□ -2.2
CD44-238ENST00000534296 ERCC6L2Q5T890 1561 aa1.33□□□□□ -2.2
CD44-238ENST00000534296 BAZ1BQ9UIG0 1483 aaKnown RBP1.32□□□□□ -2.2
CD44-238ENST00000534296 IGKV1OR2-108A0A075B7D4 117 aa1.32□□□□□ -2.2
CD44-238ENST00000534296 A0A1B0GTI1 187 aa1.32□□□□□ -2.2
CD44-238ENST00000534296 A0A1B0GXF2 115 aa1.32□□□□□ -2.2
CD44-238ENST00000534296 F8VP50 259 aa1.32□□□□□ -2.2
CD44-238ENST00000534296 PHYHO14832 338 aa1.32□□□□□ -2.2
CD44-238ENST00000534296 FFAR1O14842 300 aa1.32□□□□□ -2.2
CD44-238ENST00000534296 FGF16O43320 207 aa1.32□□□□□ -2.2
CD44-238ENST00000534296 IGKV5-2P06315 115 aa1.32□□□□□ -2.2
CD44-238ENST00000534296 OR4A8P0C604 315 aa1.32□□□□□ -2.2
CD44-238ENST00000534296 F8A1P23610 371 aa1.32□□□□□ -2.2
CD44-238ENST00000534296 CNTFRP26992 372 aa1.32□□□□□ -2.2
CD44-238ENST00000534296 GABRA3P34903 492 aa1.32□□□□□ -2.2
CD44-238ENST00000534296 KCNJ3P48549 501 aa1.32□□□□□ -2.2
CD44-238ENST00000534296 SULT1A2P50226 295 aa1.32□□□□□ -2.2
CD44-238ENST00000534296 MP68P56378 58 aa1.32□□□□□ -2.2
CD44-238ENST00000534296 RAB8AP61006 207 aa1.32□□□□□ -2.2
CD44-238ENST00000534296 RAB31Q13636 194 aa1.32□□□□□ -2.2
CD44-238ENST00000534296 MMDQ15546 238 aa1.32□□□□□ -2.2
CD44-238ENST00000534296 ZBTB6Q15916 424 aa1.32□□□□□ -2.2
CD44-238ENST00000534296 TMEM249Q2WGJ8 235 aa1.32□□□□□ -2.2
CD44-238ENST00000534296 KRTAP25-1Q3LHN0 102 aa1.32□□□□□ -2.2
CD44-238ENST00000534296 ZCWPW2Q504Y3 356 aa1.32□□□□□ -2.2
CD44-238ENST00000534296 NIPAL1Q6NVV3 410 aa1.32□□□□□ -2.2
CD44-238ENST00000534296 NOXRED1Q6NXP6 359 aa1.32□□□□□ -2.2
CD44-238ENST00000534296 ZNF322Q6U7Q0 402 aaPredicted RBP1.32□□□□□ -2.2
CD44-238ENST00000534296 CRLF3Q8IUI8 442 aa1.32□□□□□ -2.2
Retrieved 100 of 20,778 RNA–protein pairs in 48.2 ms