RNA–Protein interactions for RNA: ENST00000527797.6

VPS28-208, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,609 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-208ENST00000527797 ATPAF1Q5TC12 328 aaPredicted RBP17.56■□□□□ 0.4
VPS28-208ENST00000527797 DHRS11Q6UWP2 260 aa17.56■□□□□ 0.4
VPS28-208ENST00000527797 ZNF788Q6ZQV5 615 aa17.56■□□□□ 0.4
VPS28-208ENST00000527797 ZDHHC22Q8N966 263 aa17.56■□□□□ 0.4
VPS28-208ENST00000527797 OR5D13Q8NGL4 314 aa17.56■□□□□ 0.4
VPS28-208ENST00000527797 GAFA1Q96PS6 74 aa17.56■□□□□ 0.4
VPS28-208ENST00000527797 CCL13Q99616 98 aa17.56■□□□□ 0.4
VPS28-208ENST00000527797 ZNF2Q9BSG1 426 aaPredicted RBP17.56■□□□□ 0.4
VPS28-208ENST00000527797 BEX2Q9BXY8 128 aa17.56■□□□□ 0.4
VPS28-208ENST00000527797 BEX1Q9HBH7 125 aa17.56■□□□□ 0.4
VPS28-208ENST00000527797 MYOZ1Q9NP98 299 aaPredicted RBP17.56■□□□□ 0.4
VPS28-208ENST00000527797 MBNL3Q9NUK0 354 aaKnown RBP17.56■□□□□ 0.4
VPS28-208ENST00000527797 KIF25Q9UIL4 384 aa17.56■□□□□ 0.4
VPS28-208ENST00000527797 MEIKINA0A087WXM9 373 aa17.55■□□□□ 0.4
VPS28-208ENST00000527797 TRAV39A0A0B4J263 110 aa17.55■□□□□ 0.4
VPS28-208ENST00000527797 NKX6-3A6NJ46 265 aa17.55■□□□□ 0.4
VPS28-208ENST00000527797 PRAF2O60831 178 aa17.55■□□□□ 0.4
VPS28-208ENST00000527797 COL8A2P25067 703 aa17.55■□□□□ 0.4
VPS28-208ENST00000527797 SEC61A1P61619 476 aaKnown RBP17.55■□□□□ 0.4
VPS28-208ENST00000527797 HLA-DRB3P79483 266 aa17.55■□□□□ 0.4
VPS28-208ENST00000527797 LHFPL1Q86WI0 220 aa17.55■□□□□ 0.4
VPS28-208ENST00000527797 GIMAP1Q8WWP7 306 aa17.55■□□□□ 0.4
VPS28-208ENST00000527797 MRGPRFQ96AM1 343 aa17.55■□□□□ 0.4
VPS28-208ENST00000527797 DLL4Q9NR61 685 aa17.55■□□□□ 0.4
VPS28-208ENST00000527797 KCNIP1Q9NZI2 227 aa17.55■□□□□ 0.4
VPS28-208ENST00000527797 DYSFO75923 2080 aa17.54■□□□□ 0.4
VPS28-208ENST00000527797 TK1P04183 234 aa17.54■□□□□ 0.4
VPS28-208ENST00000527797 ANXA7P20073 488 aaKnown RBP17.54■□□□□ 0.4
VPS28-208ENST00000527797 TLE4Q04727 773 aa17.54■□□□□ 0.4
VPS28-208ENST00000527797 IGSF11Q5DX21 431 aa17.54■□□□□ 0.4
VPS28-208ENST00000527797 OR4A4PQ8NGN8 299 aa17.54■□□□□ 0.4
VPS28-208ENST00000527797 SCGB3A2Q96PL1 93 aa17.54■□□□□ 0.4
VPS28-208ENST00000527797 FAM234AQ9H0X4 552 aa17.54■□□□□ 0.4
VPS28-208ENST00000527797 DNTTIP1Q9H147 329 aa17.54■□□□□ 0.4
VPS28-208ENST00000527797 CACNA1DQ01668 2161 aa17.54■□□□□ 0.4
VPS28-208ENST00000527797 SIGLEC5O15389 551 aa17.54■□□□□ 0.4
VPS28-208ENST00000527797 GLIPR1P48060 266 aa17.54■□□□□ 0.4
VPS28-208ENST00000527797 NPY4RP50391 375 aa17.54■□□□□ 0.4
VPS28-208ENST00000527797 EDDM3AQ14507 147 aa17.54■□□□□ 0.4
VPS28-208ENST00000527797 ZNF660Q6AZW8 331 aaPredicted RBP17.54■□□□□ 0.4
VPS28-208ENST00000527797 MARCH1Q8TCQ1 289 aa17.54■□□□□ 0.4
VPS28-208ENST00000527797 DACT3Q96B18 629 aaPredicted RBP17.54■□□□□ 0.4
VPS28-208ENST00000527797 MED30Q96HR3 178 aa17.54■□□□□ 0.4
VPS28-208ENST00000527797 VSIG4Q9Y279 399 aa17.54■□□□□ 0.4
VPS28-208ENST00000527797 KMT2BQ9UMN6 2715 aaPredicted RBP17.53■□□□□ 0.4
VPS28-208ENST00000527797 A0A0A6YYJ9 748 aa17.53■□□□□ 0.4
VPS28-208ENST00000527797 C7orf66A4D0T2 115 aa17.53■□□□□ 0.4
VPS28-208ENST00000527797 OR5H14A6NHG9 310 aa17.53■□□□□ 0.4
VPS28-208ENST00000527797 BET1O15155 118 aa17.53■□□□□ 0.4
VPS28-208ENST00000527797 FCGR2CP31995 323 aa17.53■□□□□ 0.4
VPS28-208ENST00000527797 ECI1P42126 302 aa17.53■□□□□ 0.4
VPS28-208ENST00000527797 IL13RA1P78552 427 aa17.53■□□□□ 0.4
VPS28-208ENST00000527797 MRPS11P82912 194 aaKnown RBP17.53■□□□□ 0.4
VPS28-208ENST00000527797 KCNJ8Q15842 424 aa17.53■□□□□ 0.4
VPS28-208ENST00000527797 AADACL3Q5VUY0 350 aa17.53■□□□□ 0.4
VPS28-208ENST00000527797 C5orf24Q7Z6I8 188 aa17.53■□□□□ 0.4
VPS28-208ENST00000527797 TMED4Q7Z7H5 227 aa17.53■□□□□ 0.4
VPS28-208ENST00000527797 TMEM185AQ8NFB2 350 aa17.53■□□□□ 0.4
VPS28-208ENST00000527797 ALX4Q9H161 411 aaPredicted RBP17.53■□□□□ 0.4
VPS28-208ENST00000527797 PCDHB10Q9UN67 800 aa17.53■□□□□ 0.4
VPS28-208ENST00000527797 CEACAM18A8MTB9 384 aa17.52■□□□□ 0.4
VPS28-208ENST00000527797 LYNX1G3V0Z9 82 aa17.52■□□□□ 0.4
VPS28-208ENST00000527797 IL5P05113 134 aa17.52■□□□□ 0.4
VPS28-208ENST00000527797 LYNX1P0DP58 116 aa17.52■□□□□ 0.4
VPS28-208ENST00000527797 FPR2P25090 351 aa17.52■□□□□ 0.4
VPS28-208ENST00000527797 HERPUD1Q15011 391 aa17.52■□□□□ 0.4
VPS28-208ENST00000527797 SURF2Q15527 256 aaPredicted RBP17.52■□□□□ 0.4
VPS28-208ENST00000527797 HMGN3Q15651 99 aa17.52■□□□□ 0.4
VPS28-208ENST00000527797 C6orf183Q5T699 404 aa17.52■□□□□ 0.4
VPS28-208ENST00000527797 METTL11BQ5VVY1 283 aa17.52■□□□□ 0.4
VPS28-208ENST00000527797 GLDNQ6ZMI3 551 aaPredicted RBP17.52■□□□□ 0.4
VPS28-208ENST00000527797 SLC36A1Q7Z2H8 476 aa17.52■□□□□ 0.4
VPS28-208ENST00000527797 PEG10Q86TG7 708 aaKnown RBP17.52■□□□□ 0.4
VPS28-208ENST00000527797 FAM216BQ8N7L0 139 aa17.52■□□□□ 0.4
VPS28-208ENST00000527797 TPRX1Q8N7U7 411 aa17.52■□□□□ 0.4
VPS28-208ENST00000527797 TMPRSS13Q9BYE2 586 aa17.52■□□□□ 0.4
VPS28-208ENST00000527797 CLEC4MQ9H2X3 399 aaPredicted RBP17.52■□□□□ 0.4
VPS28-208ENST00000527797 TAF9BQ9HBM6 251 aa17.52■□□□□ 0.4
VPS28-208ENST00000527797 GPN1Q9HCN4 374 aaPredicted RBP17.52■□□□□ 0.4
VPS28-208ENST00000527797 PKDREJQ9NTG1 2253 aa17.52■□□□□ 0.4
VPS28-208ENST00000527797 ARFGEF3Q5TH69 2177 aa17.51■□□□□ 0.39
VPS28-208ENST00000527797 IGKV1-6A0A0C4DH72 117 aa17.51■□□□□ 0.39
VPS28-208ENST00000527797 A0A1B0GW55 424 aa17.51■□□□□ 0.39
VPS28-208ENST00000527797 TMPRSS2O15393 492 aa17.51■□□□□ 0.39
VPS28-208ENST00000527797 NDUFA2O43678 99 aa17.51■□□□□ 0.39
VPS28-208ENST00000527797 CLDN1O95832 211 aa17.51■□□□□ 0.39
VPS28-208ENST00000527797 DUX4L2P0CJ85 424 aa17.51■□□□□ 0.39
VPS28-208ENST00000527797 DUX4L3P0CJ86 424 aa17.51■□□□□ 0.39
VPS28-208ENST00000527797 DUX4L4P0CJ87 422 aa17.51■□□□□ 0.39
VPS28-208ENST00000527797 DUX4L5P0CJ88 424 aa17.51■□□□□ 0.39
VPS28-208ENST00000527797 DUX4L6P0CJ89 424 aa17.51■□□□□ 0.39
VPS28-208ENST00000527797 DUX4L7P0CJ90 424 aa17.51■□□□□ 0.39
VPS28-208ENST00000527797 P2RX3P56373 397 aa17.51■□□□□ 0.39
VPS28-208ENST00000527797 CBX3Q13185 183 aa17.51■□□□□ 0.39
VPS28-208ENST00000527797 SP5Q6BEB4 398 aaPredicted RBP17.51■□□□□ 0.39
VPS28-208ENST00000527797 DUX4L9Q6RFH8 374 aaPredicted RBP17.51■□□□□ 0.39
VPS28-208ENST00000527797 CHAC2Q8WUX2 184 aa17.51■□□□□ 0.39
VPS28-208ENST00000527797 CABLES2Q9BTV7 478 aa17.51■□□□□ 0.39
VPS28-208ENST00000527797 GHITMQ9H3K2 345 aa17.51■□□□□ 0.39
VPS28-208ENST00000527797 LIME1Q9H400 295 aa17.51■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 44.7 ms