RNA–Protein interactions for RNA: ENST00000526734.5

VPS28-206, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 570 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-206ENST00000526734 C17orf58Q2M2W7 97 aa16.63■□□□□ 0.25
VPS28-206ENST00000526734 SLC22A6Q4U2R8 563 aa16.63■□□□□ 0.25
VPS28-206ENST00000526734 TREML4Q6UXN2 200 aa16.63■□□□□ 0.25
VPS28-206ENST00000526734 SLC16A12Q6ZSM3 486 aa16.63■□□□□ 0.25
VPS28-206ENST00000526734 SUMF2Q8NBJ7 301 aa16.63■□□□□ 0.25
VPS28-206ENST00000526734 KIRREL1Q96J84 757 aa16.63■□□□□ 0.25
VPS28-206ENST00000526734 UQCC2Q9BRT2 126 aa16.63■□□□□ 0.25
VPS28-206ENST00000526734 HILPDAQ9Y5L2 63 aa16.63■□□□□ 0.25
VPS28-206ENST00000526734 FAM90A10PA6NDY2 464 aa16.62■□□□□ 0.25
VPS28-206ENST00000526734 FAM90A18PA6NE21 464 aa16.62■□□□□ 0.25
VPS28-206ENST00000526734 FAM90A16PA6NEW6 464 aa16.62■□□□□ 0.25
VPS28-206ENST00000526734 FAM90A20PA6NIJ5 464 aa16.62■□□□□ 0.25
VPS28-206ENST00000526734 FAM90A7PA6NKC0 464 aa16.62■□□□□ 0.25
VPS28-206ENST00000526734 FAM90A22PA8MWA6 464 aa16.62■□□□□ 0.25
VPS28-206ENST00000526734 FAM90A12PA8MX19 464 aa16.62■□□□□ 0.25
VPS28-206ENST00000526734 FAM90A5PA8MXJ8 464 aa16.62■□□□□ 0.25
VPS28-206ENST00000526734 FAM90A23PA8MXZ1 464 aa16.62■□□□□ 0.25
VPS28-206ENST00000526734 CHST1O43916 411 aa16.62■□□□□ 0.25
VPS28-206ENST00000526734 FAM90A15PP0C7V4 464 aa16.62■□□□□ 0.25
VPS28-206ENST00000526734 FAM90A13PP0C7W8 464 aa16.62■□□□□ 0.25
VPS28-206ENST00000526734 FAM90A14PP0C7W9 464 aa16.62■□□□□ 0.25
VPS28-206ENST00000526734 FAM90A24PP0C7X0 464 aa16.62■□□□□ 0.25
VPS28-206ENST00000526734 EFNB2P52799 333 aa16.62■□□□□ 0.25
VPS28-206ENST00000526734 SLC35A2P78381 396 aa16.62■□□□□ 0.25
VPS28-206ENST00000526734 HLA-DRB5Q30154 266 aa16.62■□□□□ 0.25
VPS28-206ENST00000526734 PLA1AQ53H76 456 aa16.62■□□□□ 0.25
VPS28-206ENST00000526734 CCDC144NLQ6NUI1 221 aa16.62■□□□□ 0.25
VPS28-206ENST00000526734 C16orf82Q7Z2V1 217 aa16.62■□□□□ 0.25
VPS28-206ENST00000526734 OR13A1Q8NGR1 328 aa16.62■□□□□ 0.25
VPS28-206ENST00000526734 OR9G1Q8NH87 305 aa16.62■□□□□ 0.25
VPS28-206ENST00000526734 MUL1Q969V5 352 aa16.62■□□□□ 0.25
VPS28-206ENST00000526734 ZNF286AQ9HBT8 521 aa16.62■□□□□ 0.25
VPS28-206ENST00000526734 GHRLQ9UBU3 117 aa16.62■□□□□ 0.25
VPS28-206ENST00000526734 AMMECR1Q9Y4X0 333 aaPredicted RBP16.62■□□□□ 0.25
VPS28-206ENST00000526734 TMEM30CPA0ZSE6 113 aa16.61■□□□□ 0.25
VPS28-206ENST00000526734 MAGEA13PA6NCF6 341 aa16.61■□□□□ 0.25
VPS28-206ENST00000526734 NPIPB11E5RHQ5 1161 aa16.61■□□□□ 0.25
VPS28-206ENST00000526734 GEMIN2O14893 280 aaKnown RBP16.61■□□□□ 0.25
VPS28-206ENST00000526734 MAS1P04201 325 aa16.61■□□□□ 0.25
VPS28-206ENST00000526734 GZMHP20718 246 aa16.61■□□□□ 0.25
VPS28-206ENST00000526734 AWAT2Q6E213 333 aa16.61■□□□□ 0.25
VPS28-206ENST00000526734 GLIPR1L1Q6UWM5 242 aa16.61■□□□□ 0.25
VPS28-206ENST00000526734 Q8N2B8 174 aa16.61■□□□□ 0.25
VPS28-206ENST00000526734 PLPPR1Q8TBJ4 325 aa16.61■□□□□ 0.25
VPS28-206ENST00000526734 PHYHIPQ92561 330 aa16.61■□□□□ 0.25
VPS28-206ENST00000526734 AKR1E2Q96JD6 320 aa16.61■□□□□ 0.25
VPS28-206ENST00000526734 NKX3-1Q99801 234 aaPredicted RBP16.61■□□□□ 0.25
VPS28-206ENST00000526734 IDI2-AS1Q9NZ38 188 aa16.61■□□□□ 0.25
VPS28-206ENST00000526734 LSM2Q9Y333 95 aaKnown RBP16.61■□□□□ 0.25
VPS28-206ENST00000526734 A0A1W2PPK0 400 aa16.6■□□□□ 0.25
VPS28-206ENST00000526734 PIN1P1O15428 100 aa16.6■□□□□ 0.25
VPS28-206ENST00000526734 GDNFP39905 211 aa16.6■□□□□ 0.25
VPS28-206ENST00000526734 KRTAP10-3P60369 221 aa16.6■□□□□ 0.25
VPS28-206ENST00000526734 SRSF4Q08170 494 aaKnown RBP16.6■□□□□ 0.25
VPS28-206ENST00000526734 RBM39Q14498 530 aaKnown RBP16.6■□□□□ 0.25
VPS28-206ENST00000526734 IRF3Q14653 427 aa16.6■□□□□ 0.25
VPS28-206ENST00000526734 ACSM3Q53FZ2 586 aa16.6■□□□□ 0.25
VPS28-206ENST00000526734 ATAD3CQ5T2N8 411 aa16.6■□□□□ 0.25
VPS28-206ENST00000526734 UNQ9370/PRO34162Q6UXP9 181 aa16.6■□□□□ 0.25
VPS28-206ENST00000526734 LYPD6Q86Y78 171 aa16.6■□□□□ 0.25
VPS28-206ENST00000526734 PRSS22Q9GZN4 317 aa16.6■□□□□ 0.25
VPS28-206ENST00000526734 DUSP21Q9H596 190 aa16.6■□□□□ 0.25
VPS28-206ENST00000526734 RAB9BQ9NP90 201 aa16.6■□□□□ 0.25
VPS28-206ENST00000526734 RCC2Q9P258 522 aaKnown RBP16.6■□□□□ 0.25
VPS28-206ENST00000526734 ERICH4A6NGS2 130 aa16.59■□□□□ 0.25
VPS28-206ENST00000526734 BUB1B-PAK6H3BSN5 160 aa16.59■□□□□ 0.25
VPS28-206ENST00000526734 GLAP06280 429 aa16.59■□□□□ 0.25
VPS28-206ENST00000526734 UBBP0CG47 229 aa16.59■□□□□ 0.25
VPS28-206ENST00000526734 NFYBP25208 207 aa16.59■□□□□ 0.25
VPS28-206ENST00000526734 MNDAP41218 407 aa16.59■□□□□ 0.25
VPS28-206ENST00000526734 RAB13P51153 203 aa16.59■□□□□ 0.25
VPS28-206ENST00000526734 HERPUD1Q15011 391 aa16.59■□□□□ 0.25
VPS28-206ENST00000526734 MED22Q15528 200 aa16.59■□□□□ 0.25
VPS28-206ENST00000526734 TPTE2P1Q5T6R2 138 aa16.59■□□□□ 0.25
VPS28-206ENST00000526734 CCBE1Q6UXH8 406 aaPredicted RBP16.59■□□□□ 0.25
VPS28-206ENST00000526734 BAIAP2L2Q6UXY1 529 aa16.59■□□□□ 0.25
VPS28-206ENST00000526734 Q6ZTK2 550 aa16.59■□□□□ 0.25
VPS28-206ENST00000526734 MRGPRDQ8TDS7 321 aa16.59■□□□□ 0.25
VPS28-206ENST00000526734 NEK7Q8TDX7 302 aa16.59■□□□□ 0.25
VPS28-206ENST00000526734 UFD1Q92890 307 aa16.59■□□□□ 0.25
VPS28-206ENST00000526734 MMP28Q9H239 520 aa16.59■□□□□ 0.25
VPS28-206ENST00000526734 ISYNA1Q9NPH2 558 aa16.59■□□□□ 0.25
VPS28-206ENST00000526734 MCRIP1C9JLW8 97 aa16.58■□□□□ 0.24
VPS28-206ENST00000526734 RGS10O43665 173 aa16.58■□□□□ 0.24
VPS28-206ENST00000526734 CA11O75493 328 aa16.58■□□□□ 0.24
VPS28-206ENST00000526734 TMEM30BQ3MIR4 351 aa16.58■□□□□ 0.24
VPS28-206ENST00000526734 IZUMO2Q6UXV1 221 aa16.58■□□□□ 0.24
VPS28-206ENST00000526734 CAPSLQ8WWF8 208 aa16.58■□□□□ 0.24
VPS28-206ENST00000526734 OR5M11Q96RB7 305 aa16.58■□□□□ 0.24
VPS28-206ENST00000526734 CST11Q9H112 138 aa16.58■□□□□ 0.24
VPS28-206ENST00000526734 MMP27Q9H306 513 aa16.58■□□□□ 0.24
VPS28-206ENST00000526734 ZNF702PQ9H963 129 aa16.58■□□□□ 0.24
VPS28-206ENST00000526734 LIN7BQ9HAP6 207 aa16.58■□□□□ 0.24
VPS28-206ENST00000526734 BLOC1S6Q9UL45 172 aa16.58■□□□□ 0.24
VPS28-206ENST00000526734 A0A1W2PP11 408 aa16.57■□□□□ 0.24
VPS28-206ENST00000526734 FAM172BPA6NC97 362 aa16.57■□□□□ 0.24
VPS28-206ENST00000526734 ORC5O43913 435 aa16.57■□□□□ 0.24
VPS28-206ENST00000526734 MGMTP16455 207 aa16.57■□□□□ 0.24
VPS28-206ENST00000526734 PSMA1P25786 263 aaKnown RBP16.57■□□□□ 0.24
VPS28-206ENST00000526734 TRAM1Q15629 374 aa16.57■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms