RNA–Protein interactions for RNA: ENST00000523511.1

LSM1-205, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 3

Gene LSM1, Length 700 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-205ENST00000523511 NKX3-1Q99801 234 aaPredicted RBP13.18□□□□□ -0.3
LSM1-205ENST00000523511 CCDC90BQ9GZT6 254 aa13.18□□□□□ -0.3
LSM1-205ENST00000523511 KIF25Q9UIL4 384 aa13.18□□□□□ -0.3
LSM1-205ENST00000523511 TCF19Q9Y242 345 aa13.18□□□□□ -0.3
LSM1-205ENST00000523511 AMMECR1Q9Y4X0 333 aaPredicted RBP13.18□□□□□ -0.3
LSM1-205ENST00000523511 TRAV8-7A0A075B6U6 113 aa13.17□□□□□ -0.3
LSM1-205ENST00000523511 TMEM30CPA0ZSE6 113 aa13.17□□□□□ -0.3
LSM1-205ENST00000523511 OOSP1A8MZH6 123 aa13.17□□□□□ -0.3
LSM1-205ENST00000523511 GEMIN2O14893 280 aaKnown RBP13.17□□□□□ -0.3
LSM1-205ENST00000523511 UBBP0CG47 229 aa13.17□□□□□ -0.3
LSM1-205ENST00000523511 NFYBP25208 207 aa13.17□□□□□ -0.3
LSM1-205ENST00000523511 CD34P28906 385 aa13.17□□□□□ -0.3
LSM1-205ENST00000523511 PROK1P58294 105 aa13.17□□□□□ -0.3
LSM1-205ENST00000523511 SLC35A2P78381 396 aa13.17□□□□□ -0.3
LSM1-205ENST00000523511 PLA1AQ53H76 456 aa13.17□□□□□ -0.3
LSM1-205ENST00000523511 OR9G1Q8NH87 305 aa13.17□□□□□ -0.3
LSM1-205ENST00000523511 ORAI1Q96D31 301 aa13.17□□□□□ -0.3
LSM1-205ENST00000523511 CITED1Q99966 193 aa13.17□□□□□ -0.3
LSM1-205ENST00000523511 CST11Q9H112 138 aa13.17□□□□□ -0.3
LSM1-205ENST00000523511 ISYNA1Q9NPH2 558 aa13.17□□□□□ -0.3
LSM1-205ENST00000523511 CALYQ9NYX4 217 aa13.17□□□□□ -0.3
LSM1-205ENST00000523511 IDI2-AS1Q9NZ38 188 aa13.17□□□□□ -0.3
LSM1-205ENST00000523511 ANK2Q01484 3957 aa13.17□□□□□ -0.3
LSM1-205ENST00000523511 A0A087X0M5 115 aa13.16□□□□□ -0.3
LSM1-205ENST00000523511 A0A1B0GX30 115 aa13.16□□□□□ -0.3
LSM1-205ENST00000523511 FAM90A10PA6NDY2 464 aa13.16□□□□□ -0.3
LSM1-205ENST00000523511 FAM90A18PA6NE21 464 aa13.16□□□□□ -0.3
LSM1-205ENST00000523511 FAM90A16PA6NEW6 464 aa13.16□□□□□ -0.3
LSM1-205ENST00000523511 FAM90A20PA6NIJ5 464 aa13.16□□□□□ -0.3
LSM1-205ENST00000523511 FAM90A7PA6NKC0 464 aa13.16□□□□□ -0.3
LSM1-205ENST00000523511 FAM90A22PA8MWA6 464 aa13.16□□□□□ -0.3
LSM1-205ENST00000523511 FAM90A12PA8MX19 464 aa13.16□□□□□ -0.3
LSM1-205ENST00000523511 FAM90A5PA8MXJ8 464 aa13.16□□□□□ -0.3
LSM1-205ENST00000523511 FAM90A23PA8MXZ1 464 aa13.16□□□□□ -0.3
LSM1-205ENST00000523511 PEX14O75381 377 aa13.16□□□□□ -0.3
LSM1-205ENST00000523511 MMP23AO75900 390 aa13.16□□□□□ -0.3
LSM1-205ENST00000523511 GLAP06280 429 aa13.16□□□□□ -0.3
LSM1-205ENST00000523511 FAM90A15PP0C7V4 464 aa13.16□□□□□ -0.3
LSM1-205ENST00000523511 FAM90A13PP0C7W8 464 aa13.16□□□□□ -0.3
LSM1-205ENST00000523511 FAM90A14PP0C7W9 464 aa13.16□□□□□ -0.3
LSM1-205ENST00000523511 FAM90A24PP0C7X0 464 aa13.16□□□□□ -0.3
LSM1-205ENST00000523511 PSMA1P25786 263 aaKnown RBP13.16□□□□□ -0.3
LSM1-205ENST00000523511 RAB13P51153 203 aa13.16□□□□□ -0.3
LSM1-205ENST00000523511 ARSJQ5FYB0 599 aaPredicted RBP13.16□□□□□ -0.3
LSM1-205ENST00000523511 RBM48Q5RL73 367 aaKnown RBP13.16□□□□□ -0.3
LSM1-205ENST00000523511 UNQ9370/PRO34162Q6UXP9 181 aa13.16□□□□□ -0.3
LSM1-205ENST00000523511 Q6ZTK2 550 aa13.16□□□□□ -0.3
LSM1-205ENST00000523511 C16orf82Q7Z2V1 217 aa13.16□□□□□ -0.3
LSM1-205ENST00000523511 CEACAM19Q7Z692 300 aa13.16□□□□□ -0.3
LSM1-205ENST00000523511 PIFOQ8TCI5 191 aa13.16□□□□□ -0.3
LSM1-205ENST00000523511 PHYHIPQ92561 330 aa13.16□□□□□ -0.3
LSM1-205ENST00000523511 TMED9Q9BVK6 235 aa13.16□□□□□ -0.3
LSM1-205ENST00000523511 PRSS22Q9GZN4 317 aa13.16□□□□□ -0.3
LSM1-205ENST00000523511 PPIL3Q9H2H8 161 aaKnown RBP13.16□□□□□ -0.3
LSM1-205ENST00000523511 DUSP21Q9H596 190 aa13.16□□□□□ -0.3
LSM1-205ENST00000523511 BUB1B-PAK6H3BSN5 160 aa13.15□□□□□ -0.3
LSM1-205ENST00000523511 CA11O75493 328 aa13.15□□□□□ -0.3
LSM1-205ENST00000523511 CRTAPO75718 401 aaPredicted RBP13.15□□□□□ -0.3
LSM1-205ENST00000523511 IL1AP01583 271 aa13.15□□□□□ -0.3
LSM1-205ENST00000523511 HSMCR30P0CW71 290 aa13.15□□□□□ -0.3
LSM1-205ENST00000523511 PAX6P26367 422 aa13.15□□□□□ -0.3
LSM1-205ENST00000523511 C17orf58Q2M2W7 97 aa13.15□□□□□ -0.3
LSM1-205ENST00000523511 HSD17B12Q53GQ0 312 aa13.15□□□□□ -0.3
LSM1-205ENST00000523511 RSBN1Q5VWQ0 802 aaPredicted RBP13.15□□□□□ -0.3
LSM1-205ENST00000523511 TREML4Q6UXN2 200 aa13.15□□□□□ -0.3
LSM1-205ENST00000523511 IZUMO2Q6UXV1 221 aa13.15□□□□□ -0.3
LSM1-205ENST00000523511 OR4P4Q8NGL7 312 aa13.15□□□□□ -0.3
LSM1-205ENST00000523511 MRGPRDQ8TDS7 321 aa13.15□□□□□ -0.3
LSM1-205ENST00000523511 Q9H521 79 aa13.15□□□□□ -0.3
LSM1-205ENST00000523511 LINC00574Q9H8X3 128 aa13.15□□□□□ -0.3
LSM1-205ENST00000523511 RAB26Q9ULW5 256 aa13.15□□□□□ -0.3
LSM1-205ENST00000523511 A6NDX4 124 aa13.14□□□□□ -0.31
LSM1-205ENST00000523511 ARL6IP5O75915 188 aa13.14□□□□□ -0.31
LSM1-205ENST00000523511 IGLV1-47P01700 117 aa13.14□□□□□ -0.31
LSM1-205ENST00000523511 FAM106CPP0CH98 169 aa13.14□□□□□ -0.31
LSM1-205ENST00000523511 CGB3P0DN86 165 aa13.14□□□□□ -0.31
LSM1-205ENST00000523511 CGB7P0DN87 165 aa13.14□□□□□ -0.31
LSM1-205ENST00000523511 SRMP19623 302 aa13.14□□□□□ -0.31
LSM1-205ENST00000523511 HLA-DRB5Q30154 266 aa13.14□□□□□ -0.31
LSM1-205ENST00000523511 TRAT1Q6PIZ9 186 aa13.14□□□□□ -0.31
LSM1-205ENST00000523511 PRSS48Q7RTY5 328 aa13.14□□□□□ -0.31
LSM1-205ENST00000523511 DYNAPQ8N1N2 210 aa13.14□□□□□ -0.31
LSM1-205ENST00000523511 OR13A1Q8NGR1 328 aa13.14□□□□□ -0.31
LSM1-205ENST00000523511 RPEQ96AT9 228 aa13.14□□□□□ -0.31
LSM1-205ENST00000523511 KIRREL1Q96J84 757 aa13.14□□□□□ -0.31
LSM1-205ENST00000523511 OR5M11Q96RB7 305 aa13.14□□□□□ -0.31
LSM1-205ENST00000523511 SELENOIQ9C0D9 397 aa13.14□□□□□ -0.31
LSM1-205ENST00000523511 MMP28Q9H239 520 aa13.14□□□□□ -0.31
LSM1-205ENST00000523511 PEX16Q9Y5Y5 336 aa13.14□□□□□ -0.31
LSM1-205ENST00000523511 NPIPB11E5RHQ5 1161 aa13.13□□□□□ -0.31
LSM1-205ENST00000523511 J3QR06 171 aa13.13□□□□□ -0.31
LSM1-205ENST00000523511 PIN1P1O15428 100 aa13.13□□□□□ -0.31
LSM1-205ENST00000523511 SPINT2O43291 252 aa13.13□□□□□ -0.31
LSM1-205ENST00000523511 ORC5O43913 435 aa13.13□□□□□ -0.31
LSM1-205ENST00000523511 MGMTP16455 207 aa13.13□□□□□ -0.31
LSM1-205ENST00000523511 FUT3P21217 361 aa13.13□□□□□ -0.31
LSM1-205ENST00000523511 CRHBPP24387 322 aa13.13□□□□□ -0.31
LSM1-205ENST00000523511 PSMD7P51665 324 aa13.13□□□□□ -0.31
LSM1-205ENST00000523511 TPBGQ13641 420 aa13.13□□□□□ -0.31
LSM1-205ENST00000523511 TMEM30BQ3MIR4 351 aa13.13□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms