RNA–Protein interactions for RNA: ENST00000514901.5

NUP54-216, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 500 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-216ENST00000514901 C22orf15Q8WYQ4 148 aa11.67□□□□□ -0.54
NUP54-216ENST00000514901 PTX4Q96A99 478 aa11.67□□□□□ -0.54
NUP54-216ENST00000514901 SLC6A7Q99884 636 aa11.67□□□□□ -0.54
NUP54-216ENST00000514901 ING3Q9NXR8 418 aa11.67□□□□□ -0.54
NUP54-216ENST00000514901 ETAA1Q9NY74 926 aa11.67□□□□□ -0.54
NUP54-216ENST00000514901 ZNF581Q9P0T4 197 aa11.67□□□□□ -0.54
NUP54-216ENST00000514901 SESN1Q9Y6P5 492 aa11.67□□□□□ -0.54
NUP54-216ENST00000514901 KBTBD11-OT1A0A1B0GTJ5 212 aa11.66□□□□□ -0.54
NUP54-216ENST00000514901 NPFFO15130 113 aa11.66□□□□□ -0.54
NUP54-216ENST00000514901 CLPXO76031 633 aa11.66□□□□□ -0.54
NUP54-216ENST00000514901 MT-ND4P03905 459 aa11.66□□□□□ -0.54
NUP54-216ENST00000514901 RAB6AP20340 208 aa11.66□□□□□ -0.54
NUP54-216ENST00000514901 MIDNQ504T8 468 aa11.66□□□□□ -0.54
NUP54-216ENST00000514901 BRICD5Q6PL45 260 aa11.66□□□□□ -0.54
NUP54-216ENST00000514901 ZNF497Q6ZNH5 498 aa11.66□□□□□ -0.54
NUP54-216ENST00000514901 CROCCP3Q8IVE0 287 aa11.66□□□□□ -0.54
NUP54-216ENST00000514901 PDZD9Q8IXQ8 264 aa11.66□□□□□ -0.54
NUP54-216ENST00000514901 BCL6BQ8N143 479 aaPredicted RBP11.66□□□□□ -0.54
NUP54-216ENST00000514901 LPAR5Q9H1C0 372 aa11.66□□□□□ -0.54
NUP54-216ENST00000514901 PRDM13Q9H4Q3 707 aa11.66□□□□□ -0.54
NUP54-216ENST00000514901 LINC00574Q9H8X3 128 aa11.66□□□□□ -0.54
NUP54-216ENST00000514901 LIN7BQ9HAP6 207 aa11.66□□□□□ -0.54
NUP54-216ENST00000514901 RAB9BQ9NP90 201 aa11.66□□□□□ -0.54
NUP54-216ENST00000514901 PLEKHJ1Q9NW61 149 aa11.66□□□□□ -0.54
NUP54-216ENST00000514901 FAM96BQ9Y3D0 163 aa11.66□□□□□ -0.54
NUP54-216ENST00000514901 TMEM272A0A1B0GTI8 110 aa11.65□□□□□ -0.54
NUP54-216ENST00000514901 MEX3AA1L020 520 aaKnown RBP11.65□□□□□ -0.54
NUP54-216ENST00000514901 METTL21EPA6NDL7 271 aa11.65□□□□□ -0.54
NUP54-216ENST00000514901 CGB3P0DN86 165 aa11.65□□□□□ -0.54
NUP54-216ENST00000514901 CGB7P0DN87 165 aa11.65□□□□□ -0.54
NUP54-216ENST00000514901 CHATP28329 748 aa11.65□□□□□ -0.54
NUP54-216ENST00000514901 BLVRBP30043 206 aaPredicted RBP11.65□□□□□ -0.54
NUP54-216ENST00000514901 GLP1RP43220 463 aa11.65□□□□□ -0.54
NUP54-216ENST00000514901 SCAND1P57086 179 aa11.65□□□□□ -0.54
NUP54-216ENST00000514901 HILS1P60008 231 aa11.65□□□□□ -0.54
NUP54-216ENST00000514901 NKAPLQ5M9Q1 402 aa11.65□□□□□ -0.54
NUP54-216ENST00000514901 RUSC1-AS1Q66K80 236 aa11.65□□□□□ -0.54
NUP54-216ENST00000514901 HCP5Q6MZN7 132 aa11.65□□□□□ -0.54
NUP54-216ENST00000514901 SFXN4Q6P4A7 337 aa11.65□□□□□ -0.54
NUP54-216ENST00000514901 NR2C2APQ86WQ0 139 aa11.65□□□□□ -0.54
NUP54-216ENST00000514901 GAPTQ8N292 157 aa11.65□□□□□ -0.54
NUP54-216ENST00000514901 PIP4P2Q8N4L2 257 aa11.65□□□□□ -0.54
NUP54-216ENST00000514901 SIGLECL1Q8N7X8 197 aa11.65□□□□□ -0.54
NUP54-216ENST00000514901 OR10A7Q8NGE5 316 aa11.65□□□□□ -0.54
NUP54-216ENST00000514901 OR56B1Q8NGI3 324 aa11.65□□□□□ -0.54
NUP54-216ENST00000514901 ZDHHC16Q969W1 377 aa11.65□□□□□ -0.54
NUP54-216ENST00000514901 FUNDC2Q9BWH2 189 aa11.65□□□□□ -0.54
NUP54-216ENST00000514901 KCNK15Q9H427 330 aa11.65□□□□□ -0.54
NUP54-216ENST00000514901 RNF167Q9H6Y7 350 aa11.65□□□□□ -0.54
NUP54-216ENST00000514901 HSF4Q9ULV5 492 aa11.65□□□□□ -0.54
NUP54-216ENST00000514901 ORC5O43913 435 aa11.64□□□□□ -0.55
NUP54-216ENST00000514901 IL1AP01583 271 aa11.64□□□□□ -0.55
NUP54-216ENST00000514901 CDK2P24941 298 aa11.64□□□□□ -0.55
NUP54-216ENST00000514901 ALDH3B2P48448 385 aa11.64□□□□□ -0.55
NUP54-216ENST00000514901 DLX1P56177 255 aa11.64□□□□□ -0.55
NUP54-216ENST00000514901 LGALS4P56470 323 aa11.64□□□□□ -0.55
NUP54-216ENST00000514901 MXD1Q05195 221 aa11.64□□□□□ -0.55
NUP54-216ENST00000514901 KLRD1Q13241 179 aa11.64□□□□□ -0.55
NUP54-216ENST00000514901 C17orf58Q2M2W7 97 aa11.64□□□□□ -0.55
NUP54-216ENST00000514901 C6orf183Q5T699 404 aa11.64□□□□□ -0.55
NUP54-216ENST00000514901 TRAT1Q6PIZ9 186 aa11.64□□□□□ -0.55
NUP54-216ENST00000514901 ZNF782Q6ZMW2 699 aaPredicted RBP11.64□□□□□ -0.55
NUP54-216ENST00000514901 Q6ZTK2 550 aa11.64□□□□□ -0.55
NUP54-216ENST00000514901 RTN4RL2Q86UN3 420 aa11.64□□□□□ -0.55
NUP54-216ENST00000514901 ANKRD13BQ86YJ7 626 aa11.64□□□□□ -0.55
NUP54-216ENST00000514901 PNKDQ8N490 385 aa11.64□□□□□ -0.55
NUP54-216ENST00000514901 OR11H6Q8NGC7 330 aa11.64□□□□□ -0.55
NUP54-216ENST00000514901 OR13A1Q8NGR1 328 aa11.64□□□□□ -0.55
NUP54-216ENST00000514901 MRGPRDQ8TDS7 321 aa11.64□□□□□ -0.55
NUP54-216ENST00000514901 NICN1Q9BSH3 213 aa11.64□□□□□ -0.55
NUP54-216ENST00000514901 TMEM133Q9H2Q1 129 aa11.64□□□□□ -0.55
NUP54-216ENST00000514901 RIMS4Q9H426 269 aaPredicted RBP11.64□□□□□ -0.55
NUP54-216ENST00000514901 ZMAT3Q9HA38 289 aaKnown RBP11.64□□□□□ -0.55
NUP54-216ENST00000514901 CALYQ9NYX4 217 aa11.64□□□□□ -0.55
NUP54-216ENST00000514901 DAPK2Q9UIK4 370 aa11.64□□□□□ -0.55
NUP54-216ENST00000514901 TRAPPC2LQ9UL33 140 aa11.64□□□□□ -0.55
NUP54-216ENST00000514901 CUBNO60494 3623 aa11.63□□□□□ -0.55
NUP54-216ENST00000514901 A0A0A6YYD4 124 aa11.63□□□□□ -0.55
NUP54-216ENST00000514901 UBE2QL1A1L167 161 aa11.63□□□□□ -0.55
NUP54-216ENST00000514901 MEIOCA2RUB1 952 aa11.63□□□□□ -0.55
NUP54-216ENST00000514901 POM121CA8CG34 1229 aa11.63□□□□□ -0.55
NUP54-216ENST00000514901 NPIPB11E5RHQ5 1161 aa11.63□□□□□ -0.55
NUP54-216ENST00000514901 SOCS1O15524 211 aa11.63□□□□□ -0.55
NUP54-216ENST00000514901 TFAP2AP05549 437 aa11.63□□□□□ -0.55
NUP54-216ENST00000514901 FBP1P09467 338 aa11.63□□□□□ -0.55
NUP54-216ENST00000514901 SLC2A2P11168 524 aaPredicted RBP11.63□□□□□ -0.55
NUP54-216ENST00000514901 COX7A1P24310 79 aa11.63□□□□□ -0.55
NUP54-216ENST00000514901 VEGFCP49767 419 aa11.63□□□□□ -0.55
NUP54-216ENST00000514901 PRB3Q04118 309 aaPredicted RBP11.63□□□□□ -0.55
NUP54-216ENST00000514901 DEFB112Q30KQ8 113 aa11.63□□□□□ -0.55
NUP54-216ENST00000514901 PRAMEF5Q5TYX0 476 aa11.63□□□□□ -0.55
NUP54-216ENST00000514901 SLC16A12Q6ZSM3 486 aa11.63□□□□□ -0.55
NUP54-216ENST00000514901 GPR141Q7Z602 305 aa11.63□□□□□ -0.55
NUP54-216ENST00000514901 ZNF554Q86TJ5 538 aa11.63□□□□□ -0.55
NUP54-216ENST00000514901 ZFAND2BQ8WV99 257 aa11.63□□□□□ -0.55
NUP54-216ENST00000514901 ZNF48Q96MX3 618 aaPredicted RBP11.63□□□□□ -0.55
NUP54-216ENST00000514901 FAAP24Q9BTP7 215 aa11.63□□□□□ -0.55
NUP54-216ENST00000514901 CLEC7AQ9BXN2 247 aa11.63□□□□□ -0.55
NUP54-216ENST00000514901 IDI2-AS1Q9NZ38 188 aa11.63□□□□□ -0.55
NUP54-216ENST00000514901 A0A087X0M5 115 aa11.62□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms