RNA–Protein interactions for RNA: ENST00000490788.1

HMGB1-208, Transcript of high mobility group box 1, humanhuman

TSL 2

Gene HMGB1, Length 425 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-208ENST00000490788 OR10R2Q8NGX6 335 aa1.62□□□□□ -2.15
HMGB1-208ENST00000490788 OR4S2Q8NH73 311 aa1.62□□□□□ -2.15
HMGB1-208ENST00000490788 PPTC7Q8NI37 304 aa1.62□□□□□ -2.15
HMGB1-208ENST00000490788 RHEBL1Q8TAI7 183 aa1.62□□□□□ -2.15
HMGB1-208ENST00000490788 MRAPQ8TCY5 172 aa1.62□□□□□ -2.15
HMGB1-208ENST00000490788 GPX8Q8TED1 209 aa1.62□□□□□ -2.15
HMGB1-208ENST00000490788 BCL2L2Q92843 193 aaPredicted RBP1.62□□□□□ -2.15
HMGB1-208ENST00000490788 UCN3Q969E3 161 aa1.62□□□□□ -2.15
HMGB1-208ENST00000490788 RPUSD4Q96CM3 377 aaKnown RBP1.62□□□□□ -2.15
HMGB1-208ENST00000490788 RCN3Q96D15 328 aa1.62□□□□□ -2.15
HMGB1-208ENST00000490788 HAVCR1Q96D42 359 aa1.62□□□□□ -2.15
HMGB1-208ENST00000490788 ASB9Q96DX5 294 aa1.62□□□□□ -2.15
HMGB1-208ENST00000490788 CENPNQ96H22 339 aaPredicted RBP1.62□□□□□ -2.15
HMGB1-208ENST00000490788 PCED1BQ96HM7 432 aa1.62□□□□□ -2.15
HMGB1-208ENST00000490788 AKR1E2Q96JD6 320 aa1.62□□□□□ -2.15
HMGB1-208ENST00000490788 TECTBQ96PL2 329 aa1.62□□□□□ -2.15
HMGB1-208ENST00000490788 TSSK3Q96PN8 268 aa1.62□□□□□ -2.15
HMGB1-208ENST00000490788 OR52E6Q96RD3 313 aa1.62□□□□□ -2.15
HMGB1-208ENST00000490788 RAB40CQ96S21 281 aa1.62□□□□□ -2.15
HMGB1-208ENST00000490788 ARHGDIGQ99819 225 aa1.62□□□□□ -2.15
HMGB1-208ENST00000490788 SPAG8Q99932 426 aaPredicted RBP1.62□□□□□ -2.15
HMGB1-208ENST00000490788 AGPAT1Q99943 283 aa1.62□□□□□ -2.15
HMGB1-208ENST00000490788 TIMM29Q9BSF4 260 aa1.62□□□□□ -2.15
HMGB1-208ENST00000490788 NICN1Q9BSH3 213 aa1.62□□□□□ -2.15
HMGB1-208ENST00000490788 C19orf24Q9BVV8 132 aa1.62□□□□□ -2.15
HMGB1-208ENST00000490788 CHIAQ9BZP6 476 aa1.62□□□□□ -2.15
HMGB1-208ENST00000490788 CHRNA10Q9GZZ6 450 aa1.62□□□□□ -2.15
HMGB1-208ENST00000490788 OR51J1Q9H342 316 aa1.62□□□□□ -2.15
HMGB1-208ENST00000490788 CST9LQ9H4G1 147 aa1.62□□□□□ -2.15
HMGB1-208ENST00000490788 GEMIN7Q9H840 131 aaKnown RBP1.62□□□□□ -2.15
HMGB1-208ENST00000490788 TPT1P8Q9HAU6 139 aa1.62□□□□□ -2.15
HMGB1-208ENST00000490788 LRTM1Q9HBL6 345 aa1.62□□□□□ -2.15
HMGB1-208ENST00000490788 AMBNQ9NP70 447 aa1.62□□□□□ -2.15
HMGB1-208ENST00000490788 AGPAT4Q9NRZ5 378 aa1.62□□□□□ -2.15
HMGB1-208ENST00000490788 NLE1Q9NVX2 485 aaPredicted RBP1.62□□□□□ -2.15
HMGB1-208ENST00000490788 PLEKHJ1Q9NW61 149 aa1.62□□□□□ -2.15
HMGB1-208ENST00000490788 MRPL22Q9NWU5 206 aaKnown RBP1.62□□□□□ -2.15
HMGB1-208ENST00000490788 VNN3Q9NY84 501 aa1.62□□□□□ -2.15
HMGB1-208ENST00000490788 TAS2R16Q9NYV7 291 aa1.62□□□□□ -2.15
HMGB1-208ENST00000490788 STOX2Q9P2F5 926 aaPredicted RBP1.62□□□□□ -2.15
HMGB1-208ENST00000490788 ZNF629Q9UEG4 869 aaPredicted RBP1.62□□□□□ -2.15
HMGB1-208ENST00000490788 PRODH2Q9UF12 536 aa1.62□□□□□ -2.15
HMGB1-208ENST00000490788 MRM2Q9UI43 246 aaKnown RBP1.62□□□□□ -2.15
HMGB1-208ENST00000490788 UBQLN1Q9UMX0 589 aaKnown RBP1.62□□□□□ -2.15
HMGB1-208ENST00000490788 TNFSF18Q9UNG2 199 aa1.62□□□□□ -2.15
HMGB1-208ENST00000490788 SLC22A13Q9Y226 551 aa1.62□□□□□ -2.15
HMGB1-208ENST00000490788 RNF6Q9Y252 685 aa1.62□□□□□ -2.15
HMGB1-208ENST00000490788 ZNF256Q9Y2P7 627 aaPredicted RBP1.62□□□□□ -2.15
HMGB1-208ENST00000490788 CARHSP1Q9Y2V2 147 aaKnown RBP1.62□□□□□ -2.15
HMGB1-208ENST00000490788 EXOSC1Q9Y3B2 195 aaKnown RBP1.62□□□□□ -2.15
HMGB1-208ENST00000490788 OR10H1Q9Y4A9 318 aa1.62□□□□□ -2.15
HMGB1-208ENST00000490788 OR1A2Q9Y585 309 aa1.62□□□□□ -2.15
HMGB1-208ENST00000490788 TSSC4Q9Y5U2 329 aaPredicted RBP1.62□□□□□ -2.15
HMGB1-208ENST00000490788 KPTNQ9Y664 436 aa1.62□□□□□ -2.15
HMGB1-208ENST00000490788 V9GYH0 126 aa1.62□□□□□ -2.15
HMGB1-208ENST00000490788 V9GYS6 101 aa1.62□□□□□ -2.15
HMGB1-208ENST00000490788 AGRNO00468 2067 aa1.62□□□□□ -2.15
HMGB1-208ENST00000490788 CUBNO60494 3623 aa1.61□□□□□ -2.15
HMGB1-208ENST00000490788 UBR4Q5T4S7 5183 aa1.61□□□□□ -2.15
HMGB1-208ENST00000490788 PPIAL4EA0A075B759 164 aa1.61□□□□□ -2.15
HMGB1-208ENST00000490788 IGKV6D-21A0A0A0MT36 114 aa1.61□□□□□ -2.15
HMGB1-208ENST00000490788 PPIAL4CA0A0B4J2A2 164 aa1.61□□□□□ -2.15
HMGB1-208ENST00000490788 A0A1B0GVI7 797 aa1.61□□□□□ -2.15
HMGB1-208ENST00000490788 TCRBV3S1A0A5B6 114 aa1.61□□□□□ -2.15
HMGB1-208ENST00000490788 FAM168BA1KXE4 195 aa1.61□□□□□ -2.15
HMGB1-208ENST00000490788 PRSS37A4D1T9 235 aa1.61□□□□□ -2.15
HMGB1-208ENST00000490788 OR5H1A6NKK0 313 aa1.61□□□□□ -2.15
HMGB1-208ENST00000490788 CLDN24A6NM45 220 aa1.61□□□□□ -2.15
HMGB1-208ENST00000490788 YJEFN3A6XGL0 299 aa1.61□□□□□ -2.15
HMGB1-208ENST00000490788 PPIAL4DF5H284 164 aa1.61□□□□□ -2.15
HMGB1-208ENST00000490788 RPL36A-HNRNPH2H7BZ11 118 aa1.61□□□□□ -2.15
HMGB1-208ENST00000490788 H7C417 338 aa1.61□□□□□ -2.15
HMGB1-208ENST00000490788 K7ERU9 68 aa1.61□□□□□ -2.15
HMGB1-208ENST00000490788 SULT2B1O00204 365 aa1.61□□□□□ -2.15
HMGB1-208ENST00000490788 TLR4O00206 839 aa1.61□□□□□ -2.15
HMGB1-208ENST00000490788 OR7A17O14581 309 aa1.61□□□□□ -2.15
HMGB1-208ENST00000490788 GOSR2O14653 212 aa1.61□□□□□ -2.15
HMGB1-208ENST00000490788 TNFSF11O14788 317 aa1.61□□□□□ -2.15
HMGB1-208ENST00000490788 PPP1R2P9O14990 202 aa1.61□□□□□ -2.15
HMGB1-208ENST00000490788 AGPAT2O15120 278 aa1.61□□□□□ -2.15
HMGB1-208ENST00000490788 EMC8O43402 210 aa1.61□□□□□ -2.15
HMGB1-208ENST00000490788 OR7C2O60412 319 aa1.61□□□□□ -2.15
HMGB1-208ENST00000490788 SNNO75324 88 aaPredicted RBP1.61□□□□□ -2.15
HMGB1-208ENST00000490788 MMP23AO75900 390 aa1.61□□□□□ -2.15
HMGB1-208ENST00000490788 TOXO94900 526 aa1.61□□□□□ -2.15
HMGB1-208ENST00000490788 OR2F2O95006 317 aa1.61□□□□□ -2.15
HMGB1-208ENST00000490788 SCELO95171 688 aa1.61□□□□□ -2.15
HMGB1-208ENST00000490788 RCBTB2O95199 551 aa1.61□□□□□ -2.15
HMGB1-208ENST00000490788 GPR75O95800 540 aa1.61□□□□□ -2.15
HMGB1-208ENST00000490788 NUDT14O95848 222 aa1.61□□□□□ -2.15
HMGB1-208ENST00000490788 IGSF6O95976 241 aa1.61□□□□□ -2.15
HMGB1-208ENST00000490788 ACTL6AO96019 429 aa1.61□□□□□ -2.15
HMGB1-208ENST00000490788 CST4P01036 141 aa1.61□□□□□ -2.15
HMGB1-208ENST00000490788 ALDOBP05062 364 aa1.61□□□□□ -2.15
HMGB1-208ENST00000490788 LGALS2P05162 132 aa1.61□□□□□ -2.15
HMGB1-208ENST00000490788 BPGMP07738 259 aa1.61□□□□□ -2.15
HMGB1-208ENST00000490788 SOD3P08294 240 aa1.61□□□□□ -2.15
HMGB1-208ENST00000490788 UCHL1P09936 223 aa1.61□□□□□ -2.15
HMGB1-208ENST00000490788 KRTAP1-4P0C5Y4 121 aa1.61□□□□□ -2.15
HMGB1-208ENST00000490788 OR4A8P0C604 315 aa1.61□□□□□ -2.15
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms