RNA–Protein interactions for RNA: ENST00000489180.6

NPHP4-209, Transcript of nephrocystin 4, humanhuman

TSL 2

Gene NPHP4, Length 5,548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-209ENST00000489180 OR6C3Q9NZP0 311 aa15.44■□□□□ 0.06
NPHP4-209ENST00000489180 IL11P20809 199 aa15.44■□□□□ 0.06
NPHP4-209ENST00000489180 ACAA2P42765 397 aaKnown RBP15.44■□□□□ 0.06
NPHP4-209ENST00000489180 DPPA3Q6W0C5 159 aa15.44■□□□□ 0.06
NPHP4-209ENST00000489180 FLYWCH2Q96CP2 140 aaKnown RBP15.44■□□□□ 0.06
NPHP4-209ENST00000489180 TECRQ9NZ01 308 aaKnown RBP15.44■□□□□ 0.06
NPHP4-209ENST00000489180 PTP4A3O75365 173 aa15.43■□□□□ 0.06
NPHP4-209ENST00000489180 MOGAT3Q86VF5 341 aa15.43■□□□□ 0.06
NPHP4-209ENST00000489180 TNFSF18Q9UNG2 199 aa15.43■□□□□ 0.06
NPHP4-209ENST00000489180 UFC1Q9Y3C8 167 aa15.43■□□□□ 0.06
NPHP4-209ENST00000489180 CES1P1Q9UKY3 287 aa15.43■□□□□ 0.06
NPHP4-209ENST00000489180 TMEM265A0A087WTH1 108 aa15.43■□□□□ 0.06
NPHP4-209ENST00000489180 FAM87AP0C7U9 286 aa15.43■□□□□ 0.06
NPHP4-209ENST00000489180 MDKP21741 143 aaPredicted RBP15.43■□□□□ 0.06
NPHP4-209ENST00000489180 MIOXQ9UGB7 285 aa15.43■□□□□ 0.06
NPHP4-209ENST00000489180 FAM209AQ5JX71 171 aa15.43■□□□□ 0.06
NPHP4-209ENST00000489180 TMEM108Q6UXF1 575 aa15.43■□□□□ 0.06
NPHP4-209ENST00000489180 GPR35Q9HC97 309 aa15.43■□□□□ 0.06
NPHP4-209ENST00000489180 ADAMTSL1Q8N6G6 1762 aa15.43■□□□□ 0.06
NPHP4-209ENST00000489180 M0R143 59 aa15.42■□□□□ 0.06
NPHP4-209ENST00000489180 TNFSF14O43557 240 aa15.42■□□□□ 0.06
NPHP4-209ENST00000489180 PRRX1P54821 245 aa15.42■□□□□ 0.06
NPHP4-209ENST00000489180 TFF2Q03403 129 aa15.42■□□□□ 0.06
NPHP4-209ENST00000489180 PPP1R3EQ9H7J1 279 aa15.42■□□□□ 0.06
NPHP4-209ENST00000489180 FAM157CP0CG43 387 aa15.42■□□□□ 0.06
NPHP4-209ENST00000489180 HES3Q5TGS1 186 aa15.42■□□□□ 0.06
NPHP4-209ENST00000489180 ZNF488Q96MN9 340 aa15.42■□□□□ 0.06
NPHP4-209ENST00000489180 TMEM167BQ9NRX6 74 aa15.42■□□□□ 0.06
NPHP4-209ENST00000489180 BET1LQ9NYM9 111 aa15.42■□□□□ 0.06
NPHP4-209ENST00000489180 WNT16Q9UBV4 365 aa15.42■□□□□ 0.06
NPHP4-209ENST00000489180 NPTNQ9Y639 398 aa15.42■□□□□ 0.06
NPHP4-209ENST00000489180 IGHV3OR15-7A0A075B7D8 119 aa15.42■□□□□ 0.06
NPHP4-209ENST00000489180 J3KRW8 73 aa15.42■□□□□ 0.06
NPHP4-209ENST00000489180 RNF224P0DH78 156 aa15.42■□□□□ 0.06
NPHP4-209ENST00000489180 BHLHA15Q7RTS1 189 aaPredicted RBP15.42■□□□□ 0.06
NPHP4-209ENST00000489180 OR10C1Q96KK4 312 aa15.42■□□□□ 0.06
NPHP4-209ENST00000489180 SF3B5Q9BWJ5 86 aaKnown RBP15.42■□□□□ 0.06
NPHP4-209ENST00000489180 PARP11Q9NR21 331 aa15.42■□□□□ 0.06
NPHP4-209ENST00000489180 ELF5Q9UKW6 265 aaPredicted RBP15.42■□□□□ 0.06
NPHP4-209ENST00000489180 ZFP36L2P47974 494 aaKnown RBP15.42■□□□□ 0.06
NPHP4-209ENST00000489180 MRPS18AQ9NVS2 196 aaKnown RBP15.42■□□□□ 0.06
NPHP4-209ENST00000489180 SIPA1L3O60292 1781 aaPredicted RBP15.42■□□□□ 0.06
NPHP4-209ENST00000489180 PAPPA2Q9BXP8 1791 aa15.42■□□□□ 0.06
NPHP4-209ENST00000489180 NPIPB8E9PQR5 432 aa15.42■□□□□ 0.06
NPHP4-209ENST00000489180 MFNGO00587 321 aa15.42■□□□□ 0.06
NPHP4-209ENST00000489180 TCFL5Q9UL49 500 aa15.42■□□□□ 0.06
NPHP4-209ENST00000489180 SRSF10O75494 262 aaKnown RBP15.41■□□□□ 0.06
NPHP4-209ENST00000489180 HIST3H3Q16695 136 aa15.41■□□□□ 0.06
NPHP4-209ENST00000489180 TUSC1Q2TAM9 212 aa15.41■□□□□ 0.06
NPHP4-209ENST00000489180 GAB4Q2WGN9 574 aa15.41■□□□□ 0.06
NPHP4-209ENST00000489180 TNFRSF19Q9NS68 423 aa15.41■□□□□ 0.06
NPHP4-209ENST00000489180 ATP6V0CP27449 155 aa15.41■□□□□ 0.06
NPHP4-209ENST00000489180 PRSS27Q9BQR3 290 aa15.41■□□□□ 0.06
NPHP4-209ENST00000489180 WFDC6Q9BQY6 131 aa15.41■□□□□ 0.06
NPHP4-209ENST00000489180 ZNF71Q9NQZ8 489 aaPredicted RBP15.41■□□□□ 0.06
NPHP4-209ENST00000489180 IER3P46695 156 aa15.41■□□□□ 0.06
NPHP4-209ENST00000489180 ELOBQ15370 118 aa15.41■□□□□ 0.06
NPHP4-209ENST00000489180 D2HGDHQ8N465 521 aa15.41■□□□□ 0.06
NPHP4-209ENST00000489180 OR2Y1Q8NGV0 311 aa15.41■□□□□ 0.06
NPHP4-209ENST00000489180 OR2W1Q9Y3N9 320 aa15.41■□□□□ 0.06
NPHP4-209ENST00000489180 NHSL1Q5SYE7 1610 aa15.41■□□□□ 0.06
NPHP4-209ENST00000489180 PRSS1P07477 247 aa15.41■□□□□ 0.06
NPHP4-209ENST00000489180 PRSS53Q2L4Q9 553 aa15.41■□□□□ 0.06
NPHP4-209ENST00000489180 SLC35E3Q7Z769 313 aa15.41■□□□□ 0.06
NPHP4-209ENST00000489180 TGIF2LYQ8IUE0 185 aa15.41■□□□□ 0.06
NPHP4-209ENST00000489180 OR2M3Q8NG83 312 aa15.41■□□□□ 0.06
NPHP4-209ENST00000489180 B2MP61769 119 aa15.4■□□□□ 0.06
NPHP4-209ENST00000489180 DHRS11Q6UWP2 260 aa15.4■□□□□ 0.06
NPHP4-209ENST00000489180 CARFQ8N187 725 aa15.4■□□□□ 0.06
NPHP4-209ENST00000489180 OIT3Q8WWZ8 545 aa15.4■□□□□ 0.06
NPHP4-209ENST00000489180 ZNF385AQ96PM9 386 aaKnown RBP15.4■□□□□ 0.06
NPHP4-209ENST00000489180 CLN8Q9UBY8 286 aa15.4■□□□□ 0.06
NPHP4-209ENST00000489180 ZNF107Q9UII5 783 aaPredicted RBP15.4■□□□□ 0.06
NPHP4-209ENST00000489180 ACAA1P09110 424 aaPredicted RBP15.4■□□□□ 0.06
NPHP4-209ENST00000489180 PPOXP50336 477 aa15.4■□□□□ 0.06
NPHP4-209ENST00000489180 EIF3IQ13347 325 aaKnown RBP15.4■□□□□ 0.06
NPHP4-209ENST00000489180 TMEM211Q6ICI0 200 aa15.4■□□□□ 0.06
NPHP4-209ENST00000489180 C5orf17Q8NAS9 161 aa15.4■□□□□ 0.06
NPHP4-209ENST00000489180 CA5BP1Q8WTZ4 195 aa15.4■□□□□ 0.06
NPHP4-209ENST00000489180 C10orf35Q96D05 121 aa15.4■□□□□ 0.06
NPHP4-209ENST00000489180 MEGF10Q96KG7 1140 aa15.4■□□□□ 0.06
NPHP4-209ENST00000489180 CHST5Q9GZS9 411 aa15.4■□□□□ 0.06
NPHP4-209ENST00000489180 TMEM38BQ9NVV0 291 aa15.4■□□□□ 0.06
NPHP4-209ENST00000489180 OR5AC2Q9NZP5 309 aa15.4■□□□□ 0.06
NPHP4-209ENST00000489180 BRWD1Q9NSI6 2320 aa15.4■□□□□ 0.06
NPHP4-209ENST00000489180 A0A1W2PPE3 182 aa15.4■□□□□ 0.06
NPHP4-209ENST00000489180 SH2D7A6NKC9 451 aaPredicted RBP15.4■□□□□ 0.06
NPHP4-209ENST00000489180 AESQ08117 197 aa15.4■□□□□ 0.06
NPHP4-209ENST00000489180 HOGA1Q86XE5 327 aa15.4■□□□□ 0.06
NPHP4-209ENST00000489180 ZNF721Q8TF20 911 aa15.4■□□□□ 0.06
NPHP4-209ENST00000489180 RNF24Q9Y225 148 aa15.4■□□□□ 0.06
NPHP4-209ENST00000489180 ABCA3Q99758 1704 aa15.4■□□□□ 0.06
NPHP4-209ENST00000489180 RPL36A-HNRNPH2H7BZ11 118 aa15.4■□□□□ 0.06
NPHP4-209ENST00000489180 FOXS1O43638 330 aa15.4■□□□□ 0.06
NPHP4-209ENST00000489180 GUCA2BQ16661 112 aa15.4■□□□□ 0.06
NPHP4-209ENST00000489180 FOCADQ5VW36 1801 aa15.4■□□□□ 0.06
NPHP4-209ENST00000489180 RPL7P18124 248 aaKnown RBP15.39■□□□□ 0.05
NPHP4-209ENST00000489180 RUNX1Q01196 453 aa15.39■□□□□ 0.05
NPHP4-209ENST00000489180 ISXQ2M1V0 245 aa15.39■□□□□ 0.05
NPHP4-209ENST00000489180 TMEM255AQ5JRV8 349 aa15.39■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms