RNA–Protein interactions for RNA: ENST00000471567.1

SDC3-203, Transcript of syndecan 3, humanhuman

TSL 3

Gene SDC3, Length 589 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-203ENST00000471567 SHISA3A0PJX4 238 aa12.46□□□□□ -0.41
SDC3-203ENST00000471567 TMEM30CPA0ZSE6 113 aa12.46□□□□□ -0.41
SDC3-203ENST00000471567 MEIOCA2RUB1 952 aa12.46□□□□□ -0.41
SDC3-203ENST00000471567 DNAJC9-AS1A6NH13 148 aa12.46□□□□□ -0.41
SDC3-203ENST00000471567 TRIM64CA6NLI5 447 aa12.46□□□□□ -0.41
SDC3-203ENST00000471567 PDCD6O75340 191 aa12.46□□□□□ -0.41
SDC3-203ENST00000471567 CA11O75493 328 aa12.46□□□□□ -0.41
SDC3-203ENST00000471567 FBP1P09467 338 aa12.46□□□□□ -0.41
SDC3-203ENST00000471567 CD36P16671 472 aa12.46□□□□□ -0.41
SDC3-203ENST00000471567 JUNBP17275 347 aaPredicted RBP12.46□□□□□ -0.41
SDC3-203ENST00000471567 RAB3BP20337 219 aa12.46□□□□□ -0.41
SDC3-203ENST00000471567 SAA4P35542 130 aa12.46□□□□□ -0.41
SDC3-203ENST00000471567 UBA52P62987 128 aaKnown RBP12.46□□□□□ -0.41
SDC3-203ENST00000471567 UNC119Q13432 240 aa12.46□□□□□ -0.41
SDC3-203ENST00000471567 OR10K2Q6IF99 312 aa12.46□□□□□ -0.41
SDC3-203ENST00000471567 RAB12Q6IQ22 244 aa12.46□□□□□ -0.41
SDC3-203ENST00000471567 TPRA1Q86W33 373 aa12.46□□□□□ -0.41
SDC3-203ENST00000471567 LDLRAD3Q86YD5 345 aa12.46□□□□□ -0.41
SDC3-203ENST00000471567 TMEM86BQ8N661 226 aa12.46□□□□□ -0.41
SDC3-203ENST00000471567 OR11H6Q8NGC7 330 aa12.46□□□□□ -0.41
SDC3-203ENST00000471567 NEK7Q8TDX7 302 aa12.46□□□□□ -0.41
SDC3-203ENST00000471567 FAM216AQ8WUB2 273 aa12.46□□□□□ -0.41
SDC3-203ENST00000471567 LINC00574Q9H8X3 128 aa12.46□□□□□ -0.41
SDC3-203ENST00000471567 STEAP1Q9UHE8 339 aa12.46□□□□□ -0.41
SDC3-203ENST00000471567 PEX16Q9Y5Y5 336 aa12.46□□□□□ -0.41
SDC3-203ENST00000471567 KBTBD11-OT1A0A1B0GTJ5 212 aa12.45□□□□□ -0.42
SDC3-203ENST00000471567 IFITM5A6NNB3 132 aa12.45□□□□□ -0.42
SDC3-203ENST00000471567 MELTFP08582 738 aa12.45□□□□□ -0.42
SDC3-203ENST00000471567 GZMHP20718 246 aa12.45□□□□□ -0.42
SDC3-203ENST00000471567 COX7A1P24310 79 aa12.45□□□□□ -0.42
SDC3-203ENST00000471567 CDK2P24941 298 aa12.45□□□□□ -0.42
SDC3-203ENST00000471567 LGALS4P56470 323 aa12.45□□□□□ -0.42
SDC3-203ENST00000471567 P2RY14Q15391 338 aa12.45□□□□□ -0.42
SDC3-203ENST00000471567 SLC9A3R2Q15599 337 aa12.45□□□□□ -0.42
SDC3-203ENST00000471567 C17orf58Q2M2W7 97 aa12.45□□□□□ -0.42
SDC3-203ENST00000471567 ZNF626Q68DY1 528 aa12.45□□□□□ -0.42
SDC3-203ENST00000471567 SIGIRRQ6IA17 410 aa12.45□□□□□ -0.42
SDC3-203ENST00000471567 BRICD5Q6PL45 260 aa12.45□□□□□ -0.42
SDC3-203ENST00000471567 ZNF497Q6ZNH5 498 aa12.45□□□□□ -0.42
SDC3-203ENST00000471567 GDPGP1Q6ZNW5 385 aa12.45□□□□□ -0.42
SDC3-203ENST00000471567 OR13A1Q8NGR1 328 aa12.45□□□□□ -0.42
SDC3-203ENST00000471567 FAM3DQ96BQ1 224 aa12.45□□□□□ -0.42
SDC3-203ENST00000471567 NEDD4LQ96PU5 975 aa12.45□□□□□ -0.42
SDC3-203ENST00000471567 URM1Q9BTM9 101 aaKnown RBP12.45□□□□□ -0.42
SDC3-203ENST00000471567 OR51E2Q9H255 320 aa12.45□□□□□ -0.42
SDC3-203ENST00000471567 TMEM133Q9H2Q1 129 aa12.45□□□□□ -0.42
SDC3-203ENST00000471567 POMT1Q9Y6A1 747 aa12.45□□□□□ -0.42
SDC3-203ENST00000471567 KIAA2026Q5HYC2 2103 aa12.44□□□□□ -0.42
SDC3-203ENST00000471567 ODF3BA8MYP8 253 aa12.44□□□□□ -0.42
SDC3-203ENST00000471567 HOXA3O43365 443 aaPredicted RBP12.44□□□□□ -0.42
SDC3-203ENST00000471567 MMP23AO75900 390 aa12.44□□□□□ -0.42
SDC3-203ENST00000471567 PAHP00439 452 aa12.44□□□□□ -0.42
SDC3-203ENST00000471567 MT-ND4P03905 459 aa12.44□□□□□ -0.42
SDC3-203ENST00000471567 RNASE1P07998 156 aaKnown RBP12.44□□□□□ -0.42
SDC3-203ENST00000471567 GADD45AP24522 165 aa12.44□□□□□ -0.42
SDC3-203ENST00000471567 GLP1RP43220 463 aa12.44□□□□□ -0.42
SDC3-203ENST00000471567 C2orf76Q3KRA6 126 aa12.44□□□□□ -0.42
SDC3-203ENST00000471567 TIMM50Q3ZCQ8 353 aa12.44□□□□□ -0.42
SDC3-203ENST00000471567 RTN4RL2Q86UN3 420 aa12.44□□□□□ -0.42
SDC3-203ENST00000471567 GAPTQ8N292 157 aa12.44□□□□□ -0.42
SDC3-203ENST00000471567 OR10A7Q8NGE5 316 aa12.44□□□□□ -0.42
SDC3-203ENST00000471567 OR51D1Q8NGF3 324 aa12.44□□□□□ -0.42
SDC3-203ENST00000471567 SSMEM1Q8WWF3 244 aa12.44□□□□□ -0.42
SDC3-203ENST00000471567 KCTD7Q96MP8 289 aa12.44□□□□□ -0.42
SDC3-203ENST00000471567 CHCHD6Q9BRQ6 235 aa12.44□□□□□ -0.42
SDC3-203ENST00000471567 ETAA1Q9NY74 926 aa12.44□□□□□ -0.42
SDC3-203ENST00000471567 CALYQ9NYX4 217 aa12.44□□□□□ -0.42
SDC3-203ENST00000471567 TBL2Q9Y4P3 447 aaKnown RBP12.44□□□□□ -0.42
SDC3-203ENST00000471567 FBN1P35555 2871 aaKnown RBP12.44□□□□□ -0.42
SDC3-203ENST00000471567 COL6A5A8TX70 2615 aa12.44□□□□□ -0.42
SDC3-203ENST00000471567 A0A087X0M5 115 aa12.43□□□□□ -0.42
SDC3-203ENST00000471567 IGHV2-26A0A0B4J1V2 119 aa12.43□□□□□ -0.42
SDC3-203ENST00000471567 A0A1B0GX30 115 aa12.43□□□□□ -0.42
SDC3-203ENST00000471567 NPIPB11E5RHQ5 1161 aa12.43□□□□□ -0.42
SDC3-203ENST00000471567 AIPO00170 330 aa12.43□□□□□ -0.42
SDC3-203ENST00000471567 LDLRAD4O15165 306 aa12.43□□□□□ -0.42
SDC3-203ENST00000471567 IL1AP01583 271 aa12.43□□□□□ -0.42
SDC3-203ENST00000471567 ARG1P05089 322 aa12.43□□□□□ -0.42
SDC3-203ENST00000471567 CHATP28329 748 aa12.43□□□□□ -0.42
SDC3-203ENST00000471567 CD34P28906 385 aa12.43□□□□□ -0.42
SDC3-203ENST00000471567 IER3P46695 156 aa12.43□□□□□ -0.42
SDC3-203ENST00000471567 CLDN12P56749 244 aa12.43□□□□□ -0.42
SDC3-203ENST00000471567 OR10A3P58181 314 aa12.43□□□□□ -0.42
SDC3-203ENST00000471567 HES5Q5TA89 166 aa12.43□□□□□ -0.42
SDC3-203ENST00000471567 PRAMEF5Q5TYX0 476 aa12.43□□□□□ -0.42
SDC3-203ENST00000471567 FAM89BQ8N5H3 189 aa12.43□□□□□ -0.42
SDC3-203ENST00000471567 BEND2Q8NDZ0 799 aa12.43□□□□□ -0.42
SDC3-203ENST00000471567 MRGPRDQ8TDS7 321 aa12.43□□□□□ -0.42
SDC3-203ENST00000471567 AJUBAQ96IF1 538 aa12.43□□□□□ -0.42
SDC3-203ENST00000471567 C19orf24Q9BVV8 132 aa12.43□□□□□ -0.42
SDC3-203ENST00000471567 CLEC7AQ9BXN2 247 aa12.43□□□□□ -0.42
SDC3-203ENST00000471567 LPAR5Q9H1C0 372 aa12.43□□□□□ -0.42
SDC3-203ENST00000471567 MEGF9Q9H1U4 602 aa12.43□□□□□ -0.42
SDC3-203ENST00000471567 DPAGT1Q9H3H5 408 aa12.43□□□□□ -0.42
SDC3-203ENST00000471567 KCNK15Q9H427 330 aa12.43□□□□□ -0.42
SDC3-203ENST00000471567 ZNRD1Q9P1U0 126 aa12.43□□□□□ -0.42
SDC3-203ENST00000471567 RAB22AQ9UL26 194 aa12.43□□□□□ -0.42
SDC3-203ENST00000471567 NOTOA8MTQ0 251 aa12.42□□□□□ -0.42
SDC3-203ENST00000471567 ORC5O43913 435 aa12.42□□□□□ -0.42
SDC3-203ENST00000471567 BLVRBP30043 206 aaPredicted RBP12.42□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms