RNA–Protein interactions for RNA: ENST00000462475.1

COL7A1-204, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 305 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-204ENST00000462475 CCDC159P0C7I6 412 aa12.72□□□□□ -0.37
COL7A1-204ENST00000462475 MADCAM1Q13477 382 aa12.72□□□□□ -0.37
COL7A1-204ENST00000462475 PIGYQ3MUY2 71 aa12.72□□□□□ -0.37
COL7A1-204ENST00000462475 SYS1Q8N2H4 156 aa12.72□□□□□ -0.37
COL7A1-204ENST00000462475 PXT1Q8NFP0 134 aa12.72□□□□□ -0.37
COL7A1-204ENST00000462475 OR5D14Q8NGL3 314 aa12.72□□□□□ -0.37
COL7A1-204ENST00000462475 TNFAIP8L1Q8WVP5 186 aa12.72□□□□□ -0.37
COL7A1-204ENST00000462475 TSEN15Q8WW01 171 aaKnown RBP12.72□□□□□ -0.37
COL7A1-204ENST00000462475 DPF1Q92782 380 aa12.72□□□□□ -0.37
COL7A1-204ENST00000462475 GPR61Q9BZJ8 451 aa12.72□□□□□ -0.37
COL7A1-204ENST00000462475 NCOR1P1Q9H4R4 102 aa12.72□□□□□ -0.37
COL7A1-204ENST00000462475 ZNF581Q9P0T4 197 aa12.72□□□□□ -0.37
COL7A1-204ENST00000462475 DHDHQ9UQ10 334 aa12.72□□□□□ -0.37
COL7A1-204ENST00000462475 ORC6Q9Y5N6 252 aa12.72□□□□□ -0.37
COL7A1-204ENST00000462475 A0A1W2PPE3 182 aa12.71□□□□□ -0.37
COL7A1-204ENST00000462475 SERPINE3A8MV23 424 aa12.71□□□□□ -0.37
COL7A1-204ENST00000462475 NUDT19A8MXV4 375 aa12.71□□□□□ -0.37
COL7A1-204ENST00000462475 FGF16O43320 207 aa12.71□□□□□ -0.37
COL7A1-204ENST00000462475 CIB2O75838 187 aa12.71□□□□□ -0.37
COL7A1-204ENST00000462475 IGKV1D-33P01593 117 aa12.71□□□□□ -0.37
COL7A1-204ENST00000462475 IGKV1-33P01594 117 aa12.71□□□□□ -0.37
COL7A1-204ENST00000462475 GABRB1P18505 474 aa12.71□□□□□ -0.37
COL7A1-204ENST00000462475 C21orf33P30042 268 aaPredicted RBP12.71□□□□□ -0.37
COL7A1-204ENST00000462475 RAB7AP51149 207 aa12.71□□□□□ -0.37
COL7A1-204ENST00000462475 PAX5Q02548 391 aa12.71□□□□□ -0.37
COL7A1-204ENST00000462475 CD69Q07108 199 aa12.71□□□□□ -0.37
COL7A1-204ENST00000462475 IL13RA2Q14627 380 aa12.71□□□□□ -0.37
COL7A1-204ENST00000462475 ZNF529Q6P280 563 aa12.71□□□□□ -0.37
COL7A1-204ENST00000462475 OR8H3Q8N146 312 aa12.71□□□□□ -0.37
COL7A1-204ENST00000462475 OR5AK2Q8NH90 309 aa12.71□□□□□ -0.37
COL7A1-204ENST00000462475 HAVCR2Q8TDQ0 301 aa12.71□□□□□ -0.37
COL7A1-204ENST00000462475 CHPT1Q8WUD6 406 aa12.71□□□□□ -0.37
COL7A1-204ENST00000462475 RGP1Q92546 391 aaPredicted RBP12.71□□□□□ -0.37
COL7A1-204ENST00000462475 MRPL48Q96GC5 212 aaKnown RBP12.71□□□□□ -0.37
COL7A1-204ENST00000462475 BARHL1Q9BZE3 327 aa12.71□□□□□ -0.37
COL7A1-204ENST00000462475 FAM192AQ9GZU8 254 aa12.71□□□□□ -0.37
COL7A1-204ENST00000462475 ERVK13-1Q9NX77 482 aa12.71□□□□□ -0.37
COL7A1-204ENST00000462475 SNTNA6NMZ2 147 aa12.7□□□□□ -0.38
COL7A1-204ENST00000462475 RAB3AP20336 220 aa12.7□□□□□ -0.38
COL7A1-204ENST00000462475 ALDH3A2P51648 485 aa12.7□□□□□ -0.38
COL7A1-204ENST00000462475 SLC35E3Q7Z769 313 aa12.7□□□□□ -0.38
COL7A1-204ENST00000462475 SATL1Q86VE3 508 aa12.7□□□□□ -0.38
COL7A1-204ENST00000462475 KLHL30-AS1Q8NEE0 82 aa12.7□□□□□ -0.38
COL7A1-204ENST00000462475 OR10X1Q8NGY0 326 aa12.7□□□□□ -0.38
COL7A1-204ENST00000462475 DUX3Q96PT4 197 aa12.7□□□□□ -0.38
COL7A1-204ENST00000462475 GPER1Q99527 375 aa12.7□□□□□ -0.38
COL7A1-204ENST00000462475 AMBNQ9NP70 447 aa12.7□□□□□ -0.38
COL7A1-204ENST00000462475 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP12.7□□□□□ -0.38
COL7A1-204ENST00000462475 TAS2R4Q9NYW5 299 aa12.7□□□□□ -0.38
COL7A1-204ENST00000462475 GMPPBQ9Y5P6 360 aa12.7□□□□□ -0.38
COL7A1-204ENST00000462475 IGHV3-72A0A0B4J1Y9 119 aa12.69□□□□□ -0.38
COL7A1-204ENST00000462475 LINC01548A6NM66 108 aa12.69□□□□□ -0.38
COL7A1-204ENST00000462475 H3BNX3 289 aa12.69□□□□□ -0.38
COL7A1-204ENST00000462475 HSD17B6O14756 317 aa12.69□□□□□ -0.38
COL7A1-204ENST00000462475 ATP5HO75947 161 aa12.69□□□□□ -0.38
COL7A1-204ENST00000462475 IGHG2P01859 326 aa12.69□□□□□ -0.38
COL7A1-204ENST00000462475 REG1BP48304 166 aa12.69□□□□□ -0.38
COL7A1-204ENST00000462475 SOX2P48431 317 aa12.69□□□□□ -0.38
COL7A1-204ENST00000462475 KCNJ3P48549 501 aa12.69□□□□□ -0.38
COL7A1-204ENST00000462475 STPG2Q8N412 459 aa12.69□□□□□ -0.38
COL7A1-204ENST00000462475 CBR4Q8N4T8 237 aa12.69□□□□□ -0.38
COL7A1-204ENST00000462475 Q8NFD4 153 aa12.69□□□□□ -0.38
COL7A1-204ENST00000462475 CPNE2Q96FN4 548 aaPredicted RBP12.69□□□□□ -0.38
COL7A1-204ENST00000462475 P2RX4Q99571 388 aa12.69□□□□□ -0.38
COL7A1-204ENST00000462475 B9D2Q9BPU9 175 aa12.69□□□□□ -0.38
COL7A1-204ENST00000462475 DPCDQ9BVM2 203 aaPredicted RBP12.69□□□□□ -0.38
COL7A1-204ENST00000462475 ZFP57Q9NU63 452 aa12.69□□□□□ -0.38
COL7A1-204ENST00000462475 CDRT1O95170 752 aa12.68□□□□□ -0.38
COL7A1-204ENST00000462475 HTR3BO95264 441 aa12.68□□□□□ -0.38
COL7A1-204ENST00000462475 FADS2O95864 444 aaKnown RBP12.68□□□□□ -0.38
COL7A1-204ENST00000462475 VSIG8P0DPA2 414 aa12.68□□□□□ -0.38
COL7A1-204ENST00000462475 MYCNOSP40205 109 aa12.68□□□□□ -0.38
COL7A1-204ENST00000462475 GTF2A1P52655 376 aaPredicted RBP12.68□□□□□ -0.38
COL7A1-204ENST00000462475 GBX2P52951 348 aaPredicted RBP12.68□□□□□ -0.38
COL7A1-204ENST00000462475 SLC35B1P78383 322 aa12.68□□□□□ -0.38
COL7A1-204ENST00000462475 ZNF816Q0VGE8 651 aaPredicted RBP12.68□□□□□ -0.38
COL7A1-204ENST00000462475 RSU1Q15404 277 aa12.68□□□□□ -0.38
COL7A1-204ENST00000462475 FAM53AQ6NSI3 398 aaPredicted RBP12.68□□□□□ -0.38
COL7A1-204ENST00000462475 SUMF2Q8NBJ7 301 aa12.68□□□□□ -0.38
COL7A1-204ENST00000462475 OR10A7Q8NGE5 316 aa12.68□□□□□ -0.38
COL7A1-204ENST00000462475 OR52I1Q8NGK6 324 aa12.68□□□□□ -0.38
COL7A1-204ENST00000462475 MYCBPQ99417 103 aaPredicted RBP12.68□□□□□ -0.38
COL7A1-204ENST00000462475 MCRIP2Q9BUT9 160 aaKnown RBP12.68□□□□□ -0.38
COL7A1-204ENST00000462475 JAM3Q9BX67 310 aa12.68□□□□□ -0.38
COL7A1-204ENST00000462475 IGHV1-3A0A0C4DH29 117 aa12.67□□□□□ -0.38
COL7A1-204ENST00000462475 CCRL2O00421 344 aa12.67□□□□□ -0.38
COL7A1-204ENST00000462475 MAGEB3O15480 346 aa12.67□□□□□ -0.38
COL7A1-204ENST00000462475 RPSAP08865 295 aaKnown RBP12.67□□□□□ -0.38
COL7A1-204ENST00000462475 SLC6A1P30531 599 aa12.67□□□□□ -0.38
COL7A1-204ENST00000462475 MRPL28Q13084 256 aaKnown RBP12.67□□□□□ -0.38
COL7A1-204ENST00000462475 EBI3Q14213 229 aa12.67□□□□□ -0.38
COL7A1-204ENST00000462475 XAF1Q6GPH4 301 aa12.67□□□□□ -0.38
COL7A1-204ENST00000462475 ASCL4Q6XD76 172 aa12.67□□□□□ -0.38
COL7A1-204ENST00000462475 SLC16A12Q6ZSM3 486 aa12.67□□□□□ -0.38
COL7A1-204ENST00000462475 LCNL1Q6ZST4 164 aa12.67□□□□□ -0.38
COL7A1-204ENST00000462475 MOB3BQ86TA1 216 aa12.67□□□□□ -0.38
COL7A1-204ENST00000462475 ZNF695Q8IW36 515 aa12.67□□□□□ -0.38
COL7A1-204ENST00000462475 FOXRED2Q8IWF2 684 aa12.67□□□□□ -0.38
COL7A1-204ENST00000462475 COMMD1Q8N668 190 aa12.67□□□□□ -0.38
COL7A1-204ENST00000462475 Q8N6K4 173 aa12.67□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 58.8 ms