RNA–Protein interactions for RNA: ENST00000437679.3

LIMS3-201, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene LIMS3, Length 1,220 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-201ENST00000437679 C16orf95Q9H693 158 aa12.29□□□□□ -0.44
LIMS3-201ENST00000437679 SPACA1Q9HBV2 294 aa12.29□□□□□ -0.44
LIMS3-201ENST00000437679 ISYNA1Q9NPH2 558 aa12.29□□□□□ -0.44
LIMS3-201ENST00000437679 ZNF581Q9P0T4 197 aa12.29□□□□□ -0.44
LIMS3-201ENST00000437679 HILPDAQ9Y5L2 63 aa12.29□□□□□ -0.44
LIMS3-201ENST00000437679 TMEM30CPA0ZSE6 113 aa12.28□□□□□ -0.44
LIMS3-201ENST00000437679 FAM172BPA6NC97 362 aa12.28□□□□□ -0.44
LIMS3-201ENST00000437679 TOR1AO14656 332 aa12.28□□□□□ -0.44
LIMS3-201ENST00000437679 CRTAPO75718 401 aaPredicted RBP12.28□□□□□ -0.44
LIMS3-201ENST00000437679 TSPAN9O75954 239 aa12.28□□□□□ -0.44
LIMS3-201ENST00000437679 NFYBP25208 207 aa12.28□□□□□ -0.44
LIMS3-201ENST00000437679 CD34P28906 385 aa12.28□□□□□ -0.44
LIMS3-201ENST00000437679 GDNFP39905 211 aa12.28□□□□□ -0.44
LIMS3-201ENST00000437679 PRRX1P54821 245 aa12.28□□□□□ -0.44
LIMS3-201ENST00000437679 MLLT11Q13015 90 aaPredicted RBP12.28□□□□□ -0.44
LIMS3-201ENST00000437679 TPBGQ13641 420 aa12.28□□□□□ -0.44
LIMS3-201ENST00000437679 TRAM1Q15629 374 aa12.28□□□□□ -0.44
LIMS3-201ENST00000437679 FAM27D1Q5T7N8 215 aa12.28□□□□□ -0.44
LIMS3-201ENST00000437679 GLT8D1Q68CQ7 371 aa12.28□□□□□ -0.44
LIMS3-201ENST00000437679 SLC35E4Q6ICL7 350 aa12.28□□□□□ -0.44
LIMS3-201ENST00000437679 LYPD6Q86Y78 171 aa12.28□□□□□ -0.44
LIMS3-201ENST00000437679 PIFOQ8TCI5 191 aa12.28□□□□□ -0.44
LIMS3-201ENST00000437679 MRGPRDQ8TDS7 321 aa12.28□□□□□ -0.44
LIMS3-201ENST00000437679 TMEM203Q969S6 136 aa12.28□□□□□ -0.44
LIMS3-201ENST00000437679 SELENOIQ9C0D9 397 aa12.28□□□□□ -0.44
LIMS3-201ENST00000437679 CALYQ9NYX4 217 aa12.28□□□□□ -0.44
LIMS3-201ENST00000437679 DPM3Q9P2X0 92 aa12.28□□□□□ -0.44
LIMS3-201ENST00000437679 GHRLQ9UBU3 117 aa12.28□□□□□ -0.44
LIMS3-201ENST00000437679 A0A087X0M5 115 aa12.27□□□□□ -0.45
LIMS3-201ENST00000437679 A0A1B0GX30 115 aa12.27□□□□□ -0.45
LIMS3-201ENST00000437679 F2RL2O00254 374 aa12.27□□□□□ -0.45
LIMS3-201ENST00000437679 IL1AP01583 271 aa12.27□□□□□ -0.45
LIMS3-201ENST00000437679 CGB3P0DN86 165 aa12.27□□□□□ -0.45
LIMS3-201ENST00000437679 CGB7P0DN87 165 aa12.27□□□□□ -0.45
LIMS3-201ENST00000437679 MGMTP16455 207 aa12.27□□□□□ -0.45
LIMS3-201ENST00000437679 SRMP19623 302 aa12.27□□□□□ -0.45
LIMS3-201ENST00000437679 PSMA1P25786 263 aaKnown RBP12.27□□□□□ -0.45
LIMS3-201ENST00000437679 MAP2K4P45985 399 aa12.27□□□□□ -0.45
LIMS3-201ENST00000437679 RAB13P51153 203 aa12.27□□□□□ -0.45
LIMS3-201ENST00000437679 RBM39Q14498 530 aaKnown RBP12.27□□□□□ -0.45
LIMS3-201ENST00000437679 LRRTM1Q86UE6 522 aa12.27□□□□□ -0.45
LIMS3-201ENST00000437679 OR4P4Q8NGL7 312 aa12.27□□□□□ -0.45
LIMS3-201ENST00000437679 OR4C13Q8NGP0 309 aa12.27□□□□□ -0.45
LIMS3-201ENST00000437679 CREB3L1Q96BA8 519 aa12.27□□□□□ -0.45
LIMS3-201ENST00000437679 MGLLQ99685 303 aa12.27□□□□□ -0.45
LIMS3-201ENST00000437679 CST11Q9H112 138 aa12.27□□□□□ -0.45
LIMS3-201ENST00000437679 BANF2Q9H503 90 aa12.27□□□□□ -0.45
LIMS3-201ENST00000437679 Q9H521 79 aa12.27□□□□□ -0.45
LIMS3-201ENST00000437679 ZNF286AQ9HBT8 521 aa12.27□□□□□ -0.45
LIMS3-201ENST00000437679 IDI2-AS1Q9NZ38 188 aa12.27□□□□□ -0.45
LIMS3-201ENST00000437679 PITPNC1Q9UKF7 332 aa12.27□□□□□ -0.45
LIMS3-201ENST00000437679 TCF19Q9Y242 345 aa12.27□□□□□ -0.45
LIMS3-201ENST00000437679 NBEAL1Q6ZS30 2694 aa12.26□□□□□ -0.45
LIMS3-201ENST00000437679 FAM90A10PA6NDY2 464 aa12.26□□□□□ -0.45
LIMS3-201ENST00000437679 FAM90A18PA6NE21 464 aa12.26□□□□□ -0.45
LIMS3-201ENST00000437679 FAM90A16PA6NEW6 464 aa12.26□□□□□ -0.45
LIMS3-201ENST00000437679 FAM90A20PA6NIJ5 464 aa12.26□□□□□ -0.45
LIMS3-201ENST00000437679 FAM90A7PA6NKC0 464 aa12.26□□□□□ -0.45
LIMS3-201ENST00000437679 FAM90A22PA8MWA6 464 aa12.26□□□□□ -0.45
LIMS3-201ENST00000437679 FAM90A12PA8MX19 464 aa12.26□□□□□ -0.45
LIMS3-201ENST00000437679 FAM90A5PA8MXJ8 464 aa12.26□□□□□ -0.45
LIMS3-201ENST00000437679 FAM90A23PA8MXZ1 464 aa12.26□□□□□ -0.45
LIMS3-201ENST00000437679 LEUTXA8MZ59 168 aa12.26□□□□□ -0.45
LIMS3-201ENST00000437679 MCRIP1C9JLW8 97 aa12.26□□□□□ -0.45
LIMS3-201ENST00000437679 H3BUI4 141 aa12.26□□□□□ -0.45
LIMS3-201ENST00000437679 SC5DO75845 299 aa12.26□□□□□ -0.45
LIMS3-201ENST00000437679 IGLV1-47P01700 117 aa12.26□□□□□ -0.45
LIMS3-201ENST00000437679 UCHL1P09936 223 aa12.26□□□□□ -0.45
LIMS3-201ENST00000437679 FAM90A15PP0C7V4 464 aa12.26□□□□□ -0.45
LIMS3-201ENST00000437679 FAM90A13PP0C7W8 464 aa12.26□□□□□ -0.45
LIMS3-201ENST00000437679 FAM90A14PP0C7W9 464 aa12.26□□□□□ -0.45
LIMS3-201ENST00000437679 FAM90A24PP0C7X0 464 aa12.26□□□□□ -0.45
LIMS3-201ENST00000437679 UBBP0CG47 229 aa12.26□□□□□ -0.45
LIMS3-201ENST00000437679 CPEP16870 476 aa12.26□□□□□ -0.45
LIMS3-201ENST00000437679 GZMHP20718 246 aa12.26□□□□□ -0.45
LIMS3-201ENST00000437679 GABRA5P31644 462 aa12.26□□□□□ -0.45
LIMS3-201ENST00000437679 CEACAM3P40198 252 aa12.26□□□□□ -0.45
LIMS3-201ENST00000437679 DYNLT3P51808 116 aa12.26□□□□□ -0.45
LIMS3-201ENST00000437679 ARHGDIBP52566 201 aa12.26□□□□□ -0.45
LIMS3-201ENST00000437679 GP2P55259 537 aaKnown RBP12.26□□□□□ -0.45
LIMS3-201ENST00000437679 PROK1P58294 105 aa12.26□□□□□ -0.45
LIMS3-201ENST00000437679 TBCEQ15813 527 aaPredicted RBP12.26□□□□□ -0.45
LIMS3-201ENST00000437679 LTC4SQ16873 150 aa12.26□□□□□ -0.45
LIMS3-201ENST00000437679 BRICD5Q6PL45 260 aa12.26□□□□□ -0.45
LIMS3-201ENST00000437679 DTX3Q8N9I9 347 aa12.26□□□□□ -0.45
LIMS3-201ENST00000437679 OR9G1Q8NH87 305 aa12.26□□□□□ -0.45
LIMS3-201ENST00000437679 KIRREL1Q96J84 757 aa12.26□□□□□ -0.45
LIMS3-201ENST00000437679 NPFFR1Q9GZQ6 430 aa12.26□□□□□ -0.45
LIMS3-201ENST00000437679 RANBP3Q9H6Z4 567 aaPredicted RBP12.26□□□□□ -0.45
LIMS3-201ENST00000437679 LINC00574Q9H8X3 128 aa12.26□□□□□ -0.45
LIMS3-201ENST00000437679 RCC2Q9P258 522 aaKnown RBP12.26□□□□□ -0.45
LIMS3-201ENST00000437679 TRAV39A0A0B4J263 110 aa12.25□□□□□ -0.45
LIMS3-201ENST00000437679 A6NDX4 124 aa12.25□□□□□ -0.45
LIMS3-201ENST00000437679 NPIPB11E5RHQ5 1161 aa12.25□□□□□ -0.45
LIMS3-201ENST00000437679 ARL6IP5O75915 188 aa12.25□□□□□ -0.45
LIMS3-201ENST00000437679 RPS25P62851 125 aaKnown RBP12.25□□□□□ -0.45
LIMS3-201ENST00000437679 HLA-DRB5Q30154 266 aa12.25□□□□□ -0.45
LIMS3-201ENST00000437679 RAB12Q6IQ22 244 aa12.25□□□□□ -0.45
LIMS3-201ENST00000437679 ZNF497Q6ZNH5 498 aa12.25□□□□□ -0.45
LIMS3-201ENST00000437679 ZNF367Q7RTV3 350 aa12.25□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 84.4 ms