RNA–Protein interactions for RNA: ENST00000423061.5

SYNE1-212, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNE1, Length 27,436 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-212ENST00000423061 SLC17A3O00476 420 aa3□□□□□ -1.93
SYNE1-212ENST00000423061 CCR5P51681 352 aa3□□□□□ -1.93
SYNE1-212ENST00000423061 EXOSC7Q15024 291 aaKnown RBP3□□□□□ -1.93
SYNE1-212ENST00000423061 UNQ9370/PRO34162Q6UXP9 181 aa3□□□□□ -1.93
SYNE1-212ENST00000423061 ALKAL1Q6UXT8 129 aa3□□□□□ -1.93
SYNE1-212ENST00000423061 Q6ZVL8 140 aa3□□□□□ -1.93
SYNE1-212ENST00000423061 PMCHL2Q9BQD1 86 aa3□□□□□ -1.93
SYNE1-212ENST00000423061 PATJQ8NI35 1801 aa3□□□□□ -1.93
SYNE1-212ENST00000423061 NKX2-6A6NCS4 301 aa3□□□□□ -1.93
SYNE1-212ENST00000423061 EMP2P54851 167 aa3□□□□□ -1.93
SYNE1-212ENST00000423061 SSBP1Q04837 148 aaKnown RBP3□□□□□ -1.93
SYNE1-212ENST00000423061 NNATQ16517 81 aa3□□□□□ -1.93
SYNE1-212ENST00000423061 FDX2Q6P4F2 183 aa3□□□□□ -1.93
SYNE1-212ENST00000423061 RFLNAQ6ZTI6 216 aa3□□□□□ -1.93
SYNE1-212ENST00000423061 MRPS16Q9Y3D3 137 aaKnown RBP3□□□□□ -1.93
SYNE1-212ENST00000423061 A0A087X0K7 114 aa3□□□□□ -1.93
SYNE1-212ENST00000423061 ZXDCQ2QGD7 858 aaPredicted RBP3□□□□□ -1.93
SYNE1-212ENST00000423061 CDRT4Q8N9R6 151 aa3□□□□□ -1.93
SYNE1-212ENST00000423061 NOXO1Q8NFA2 376 aa3□□□□□ -1.93
SYNE1-212ENST00000423061 SMIM19Q96E16 107 aa3□□□□□ -1.93
SYNE1-212ENST00000423061 ADAT3Q96EY9 351 aaPredicted RBP3□□□□□ -1.93
SYNE1-212ENST00000423061 ANGPTL4Q9BY76 406 aa3□□□□□ -1.93
SYNE1-212ENST00000423061 NMES1Q9C002 83 aa3□□□□□ -1.93
SYNE1-212ENST00000423061 KIR3DX1Q9H7L2 352 aa3□□□□□ -1.93
SYNE1-212ENST00000423061 HHLA2Q9UM44 414 aa3□□□□□ -1.93
SYNE1-212ENST00000423061 PDCD11Q14690 1871 aaKnown RBP3□□□□□ -1.93
SYNE1-212ENST00000423061 PPIAL4EA0A075B759 164 aa3□□□□□ -1.93
SYNE1-212ENST00000423061 PPIAL4FP0DN26 164 aa3□□□□□ -1.93
SYNE1-212ENST00000423061 BCL2P10415 239 aa3□□□□□ -1.93
SYNE1-212ENST00000423061 MFAP4P55083 255 aa3□□□□□ -1.93
SYNE1-212ENST00000423061 RUNX1Q01196 453 aa3□□□□□ -1.93
SYNE1-212ENST00000423061 FCRL6Q6DN72 434 aa3□□□□□ -1.93
SYNE1-212ENST00000423061 ANKRD9Q96BM1 317 aaPredicted RBP3□□□□□ -1.93
SYNE1-212ENST00000423061 STRCP1A6NGW2 1772 aa3□□□□□ -1.93
SYNE1-212ENST00000423061 TRAV30A0A087WSZ9 112 aa3□□□□□ -1.93
SYNE1-212ENST00000423061 SIGLEC7Q9Y286 467 aa3□□□□□ -1.93
SYNE1-212ENST00000423061 OR2M3Q8NG83 312 aa3□□□□□ -1.93
SYNE1-212ENST00000423061 SLC2A12Q8TD20 617 aa3□□□□□ -1.93
SYNE1-212ENST00000423061 KLK13Q9UKR3 277 aa3□□□□□ -1.93
SYNE1-212ENST00000423061 IGHV1-69-2A0A0G2JMI3 117 aa3□□□□□ -1.93
SYNE1-212ENST00000423061 G3V4G9 280 aa3□□□□□ -1.93
SYNE1-212ENST00000423061 GATA3P23771 443 aa3□□□□□ -1.93
SYNE1-212ENST00000423061 CLDN15P56746 228 aa3□□□□□ -1.93
SYNE1-212ENST00000423061 HS3ST3A1Q9Y663 406 aa3□□□□□ -1.93
SYNE1-212ENST00000423061 AHCTF1Q8WYP5 2266 aa3□□□□□ -1.93
SYNE1-212ENST00000423061 B4GALT2O60909 372 aa3□□□□□ -1.93
SYNE1-212ENST00000423061 TM4SF1P30408 202 aa3□□□□□ -1.93
SYNE1-212ENST00000423061 CEACAM6P40199 344 aa3□□□□□ -1.93
SYNE1-212ENST00000423061 ERVK-16P61578 105 aa3□□□□□ -1.93
SYNE1-212ENST00000423061 CYB5D2Q8WUJ1 264 aa3□□□□□ -1.93
SYNE1-212ENST00000423061 CUTCQ9NTM9 273 aa3□□□□□ -1.93
SYNE1-212ENST00000423061 MMP23AO75900 390 aa3□□□□□ -1.93
SYNE1-212ENST00000423061 TAS2R30P59541 319 aa3□□□□□ -1.93
SYNE1-212ENST00000423061 TRBV5-3A0A0A0MS03 114 aa3□□□□□ -1.93
SYNE1-212ENST00000423061 IGKV6-21A0A0C4DH24 114 aa3□□□□□ -1.93
SYNE1-212ENST00000423061 SLC25A26Q70HW3 274 aa3□□□□□ -1.93
SYNE1-212ENST00000423061 PLEKHA3Q9HB20 300 aa3□□□□□ -1.93
SYNE1-212ENST00000423061 HSPB2A8KAH6 182 aa3□□□□□ -1.93
SYNE1-212ENST00000423061 LATO43561 262 aa3□□□□□ -1.93
SYNE1-212ENST00000423061 SFTPDP35247 375 aa3□□□□□ -1.93
SYNE1-212ENST00000423061 HBG1P69891 147 aa3□□□□□ -1.93
SYNE1-212ENST00000423061 HBG2P69892 147 aa3□□□□□ -1.93
SYNE1-212ENST00000423061 HSPB2Q16082 182 aa3□□□□□ -1.93
SYNE1-212ENST00000423061 PCK2Q16822 640 aa3□□□□□ -1.93
SYNE1-212ENST00000423061 Q499Y3 187 aa3□□□□□ -1.93
SYNE1-212ENST00000423061 SH2D1BO14796 132 aa3□□□□□ -1.93
SYNE1-212ENST00000423061 CD8AP01732 235 aa3□□□□□ -1.93
SYNE1-212ENST00000423061 HIST1H1CP16403 213 aaKnown RBP3□□□□□ -1.93
SYNE1-212ENST00000423061 PRSS57Q6UWY2 283 aa3□□□□□ -1.93
SYNE1-212ENST00000423061 MRPL52Q86TS9 123 aaKnown RBP3□□□□□ -1.93
SYNE1-212ENST00000423061 TNFSF15O95150 251 aa3□□□□□ -1.93
SYNE1-212ENST00000423061 SMIM13P0DJ93 91 aa3□□□□□ -1.93
SYNE1-212ENST00000423061 CLDN23Q96B33 292 aa3□□□□□ -1.93
SYNE1-212ENST00000423061 IL17FQ96PD4 163 aa3□□□□□ -1.93
SYNE1-212ENST00000423061 RASL10BQ96S79 203 aa3□□□□□ -1.93
SYNE1-212ENST00000423061 HHLA1C9JL84 531 aa2.99□□□□□ -1.93
SYNE1-212ENST00000423061 PFN4Q8NHR9 129 aa2.99□□□□□ -1.93
SYNE1-212ENST00000423061 UBR3Q6ZT12 1888 aa2.99□□□□□ -1.93
SYNE1-212ENST00000423061 NSG1A0A0A6YYJ2 146 aa2.99□□□□□ -1.93
SYNE1-212ENST00000423061 MGAT2Q10469 447 aa2.99□□□□□ -1.93
SYNE1-212ENST00000423061 SPACA5Q96QH8 159 aa2.99□□□□□ -1.93
SYNE1-212ENST00000423061 ZNF665Q9H7R5 613 aa2.99□□□□□ -1.93
SYNE1-212ENST00000423061 MRPS28Q9Y2Q9 187 aaKnown RBP2.99□□□□□ -1.93
SYNE1-212ENST00000423061 A0A1B0GWB2 263 aa2.99□□□□□ -1.93
SYNE1-212ENST00000423061 FIGNL2A6NMB9 653 aa2.99□□□□□ -1.93
SYNE1-212ENST00000423061 CDK5R1Q15078 307 aa2.99□□□□□ -1.93
SYNE1-212ENST00000423061 OR5D14Q8NGL3 314 aa2.99□□□□□ -1.93
SYNE1-212ENST00000423061 DAZAP1Q96EP5 407 aaKnown RBP2.99□□□□□ -1.93
SYNE1-212ENST00000423061 AQP10Q96PS8 301 aa2.99□□□□□ -1.93
SYNE1-212ENST00000423061 OR10A2Q9H208 303 aa2.99□□□□□ -1.93
SYNE1-212ENST00000423061 OR7C1O76099 320 aaPredicted RBP2.99□□□□□ -1.93
SYNE1-212ENST00000423061 CA1P00915 261 aaPredicted RBP2.99□□□□□ -1.93
SYNE1-212ENST00000423061 RPS18P62269 152 aaKnown RBP2.99□□□□□ -1.93
SYNE1-212ENST00000423061 DIDO1Q9BTC0 2240 aaKnown RBP2.99□□□□□ -1.93
SYNE1-212ENST00000423061 PIN1P1O15428 100 aa2.99□□□□□ -1.93
SYNE1-212ENST00000423061 NPBWR2P48146 333 aa2.99□□□□□ -1.93
SYNE1-212ENST00000423061 MARCH3Q86UD3 253 aa2.99□□□□□ -1.93
SYNE1-212ENST00000423061 GREB1LQ9C091 1923 aaPredicted RBP2.99□□□□□ -1.93
SYNE1-212ENST00000423061 IL18BPO95998 194 aa2.99□□□□□ -1.93
SYNE1-212ENST00000423061 IAPPP10997 89 aa2.99□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms