RNA–Protein interactions for RNA: ENST00000411423.1

SF3A1-202, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 4

Gene SF3A1, Length 548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-202ENST00000411423 SSTR5P35346 364 aa15.3■□□□□ 0.04
SF3A1-202ENST00000411423 HLA-DRB5Q30154 266 aa15.3■□□□□ 0.04
SF3A1-202ENST00000411423 OR52W1Q6IF63 320 aa15.3■□□□□ 0.04
SF3A1-202ENST00000411423 FAM53AQ6NSI3 398 aaPredicted RBP15.3■□□□□ 0.04
SF3A1-202ENST00000411423 GLIPR1L1Q6UWM5 242 aa15.3■□□□□ 0.04
SF3A1-202ENST00000411423 UNQ9370/PRO34162Q6UXP9 181 aa15.3■□□□□ 0.04
SF3A1-202ENST00000411423 LIAT1Q6ZQX7 453 aa15.3■□□□□ 0.04
SF3A1-202ENST00000411423 RTN4RL2Q86UN3 420 aa15.3■□□□□ 0.04
SF3A1-202ENST00000411423 JAGN1Q8N5M9 183 aa15.3■□□□□ 0.04
SF3A1-202ENST00000411423 OR4C13Q8NGP0 309 aa15.3■□□□□ 0.04
SF3A1-202ENST00000411423 RFESDQ8TAC1 157 aa15.3■□□□□ 0.04
SF3A1-202ENST00000411423 NCOR1P1Q9H4R4 102 aa15.3■□□□□ 0.04
SF3A1-202ENST00000411423 RANBP3Q9H6Z4 567 aaPredicted RBP15.3■□□□□ 0.04
SF3A1-202ENST00000411423 LINC00574Q9H8X3 128 aa15.3■□□□□ 0.04
SF3A1-202ENST00000411423 ABCB10Q9NRK6 738 aa15.3■□□□□ 0.04
SF3A1-202ENST00000411423 SERTAD4Q9NUC0 356 aa15.3■□□□□ 0.04
SF3A1-202ENST00000411423 DPM3Q9P2X0 92 aa15.3■□□□□ 0.04
SF3A1-202ENST00000411423 ERGIC3Q9Y282 383 aa15.3■□□□□ 0.04
SF3A1-202ENST00000411423 MRPS28Q9Y2Q9 187 aaKnown RBP15.3■□□□□ 0.04
SF3A1-202ENST00000411423 NPIPB11E5RHQ5 1161 aa15.29■□□□□ 0.04
SF3A1-202ENST00000411423 BUB1B-PAK6H3BSN5 160 aa15.29■□□□□ 0.04
SF3A1-202ENST00000411423 CSTBP04080 98 aaKnown RBP15.29■□□□□ 0.04
SF3A1-202ENST00000411423 MYF6P23409 242 aa15.29■□□□□ 0.04
SF3A1-202ENST00000411423 VHLP40337 213 aa15.29■□□□□ 0.04
SF3A1-202ENST00000411423 LTC4SQ16873 150 aa15.29■□□□□ 0.04
SF3A1-202ENST00000411423 Q8N2B8 174 aa15.29■□□□□ 0.04
SF3A1-202ENST00000411423 TMEM104Q8NE00 496 aa15.29■□□□□ 0.04
SF3A1-202ENST00000411423 MND1Q9BWT6 205 aa15.29■□□□□ 0.04
SF3A1-202ENST00000411423 BARHL1Q9BZE3 327 aa15.29■□□□□ 0.04
SF3A1-202ENST00000411423 BANF2Q9H503 90 aa15.29■□□□□ 0.04
SF3A1-202ENST00000411423 RAB18Q9NP72 206 aa15.29■□□□□ 0.04
SF3A1-202ENST00000411423 IDI2-AS1Q9NZ38 188 aa15.29■□□□□ 0.04
SF3A1-202ENST00000411423 CKLFQ9UBR5 152 aa15.29■□□□□ 0.04
SF3A1-202ENST00000411423 F2RL2O00254 374 aa15.28■□□□□ 0.04
SF3A1-202ENST00000411423 IL1AP01583 271 aa15.28■□□□□ 0.04
SF3A1-202ENST00000411423 BLCAPP62952 87 aa15.28■□□□□ 0.04
SF3A1-202ENST00000411423 MPV17LQ2QL34 196 aa15.28■□□□□ 0.04
SF3A1-202ENST00000411423 ACSM3Q53FZ2 586 aa15.28■□□□□ 0.04
SF3A1-202ENST00000411423 TPTE2P1Q5T6R2 138 aa15.28■□□□□ 0.04
SF3A1-202ENST00000411423 LRRTM1Q86UE6 522 aa15.28■□□□□ 0.04
SF3A1-202ENST00000411423 KLHDC1Q8N7A1 406 aa15.28■□□□□ 0.04
SF3A1-202ENST00000411423 C11orf44Q8N8P7 122 aa15.28■□□□□ 0.04
SF3A1-202ENST00000411423 UBALD1Q8TB05 177 aa15.28■□□□□ 0.04
SF3A1-202ENST00000411423 ZNF596Q8TC21 504 aa15.28■□□□□ 0.04
SF3A1-202ENST00000411423 TMED9Q9BVK6 235 aa15.28■□□□□ 0.04
SF3A1-202ENST00000411423 ANKRD60Q9BZ19 345 aa15.28■□□□□ 0.04
SF3A1-202ENST00000411423 NPFFR1Q9GZQ6 430 aa15.28■□□□□ 0.04
SF3A1-202ENST00000411423 DUSP21Q9H596 190 aa15.28■□□□□ 0.04
SF3A1-202ENST00000411423 RCC2Q9P258 522 aaKnown RBP15.28■□□□□ 0.04
SF3A1-202ENST00000411423 C15orf65H3BRN8 121 aa15.27■□□□□ 0.04
SF3A1-202ENST00000411423 SC5DO75845 299 aa15.27■□□□□ 0.04
SF3A1-202ENST00000411423 GTF2F2P13984 249 aa15.27■□□□□ 0.04
SF3A1-202ENST00000411423 KCNJ3P48549 501 aa15.27■□□□□ 0.04
SF3A1-202ENST00000411423 DIAPH2-AS1Q14236 149 aa15.27■□□□□ 0.04
SF3A1-202ENST00000411423 SPHARQ15513 63 aa15.27■□□□□ 0.04
SF3A1-202ENST00000411423 TMEM95Q3KNT9 176 aa15.27■□□□□ 0.04
SF3A1-202ENST00000411423 ATAD3CQ5T2N8 411 aa15.27■□□□□ 0.04
SF3A1-202ENST00000411423 LINC00596Q86U02 117 aa15.27■□□□□ 0.04
SF3A1-202ENST00000411423 OR2T6Q8NHC8 308 aa15.27■□□□□ 0.04
SF3A1-202ENST00000411423 MYDGFQ969H8 173 aa15.27■□□□□ 0.04
SF3A1-202ENST00000411423 S100A13Q99584 98 aa15.27■□□□□ 0.04
SF3A1-202ENST00000411423 TIMM23O14925 209 aa15.26■□□□□ 0.03
SF3A1-202ENST00000411423 ZNF780AO75290 641 aaPredicted RBP15.26■□□□□ 0.03
SF3A1-202ENST00000411423 RBM39Q14498 530 aaKnown RBP15.26■□□□□ 0.03
SF3A1-202ENST00000411423 MED22Q15528 200 aa15.26■□□□□ 0.03
SF3A1-202ENST00000411423 AWAT2Q6E213 333 aa15.26■□□□□ 0.03
SF3A1-202ENST00000411423 SIGIRRQ6IA17 410 aa15.26■□□□□ 0.03
SF3A1-202ENST00000411423 CDH26Q8IXH8 852 aa15.26■□□□□ 0.03
SF3A1-202ENST00000411423 ZNF565Q8N9K5 539 aa15.26■□□□□ 0.03
SF3A1-202ENST00000411423 WIPF2Q8TF74 440 aaPredicted RBP15.26■□□□□ 0.03
SF3A1-202ENST00000411423 CCDC107Q8WV48 283 aa15.26■□□□□ 0.03
SF3A1-202ENST00000411423 CFHR4Q92496 578 aa15.26■□□□□ 0.03
SF3A1-202ENST00000411423 SCN3BQ9NY72 215 aa15.26■□□□□ 0.03
SF3A1-202ENST00000411423 PSG11Q9UQ72 335 aa15.26■□□□□ 0.03
SF3A1-202ENST00000411423 A0A1W2PPE3 182 aa15.25■□□□□ 0.03
SF3A1-202ENST00000411423 LEUTXA8MZ59 168 aa15.25■□□□□ 0.03
SF3A1-202ENST00000411423 H0YHG0 523 aa15.25■□□□□ 0.03
SF3A1-202ENST00000411423 J3QR06 171 aa15.25■□□□□ 0.03
SF3A1-202ENST00000411423 M0QZ24 198 aa15.25■□□□□ 0.03
SF3A1-202ENST00000411423 TOR1AO14656 332 aa15.25■□□□□ 0.03
SF3A1-202ENST00000411423 KCNAB3O43448 404 aa15.25■□□□□ 0.03
SF3A1-202ENST00000411423 WIPF1O43516 503 aa15.25■□□□□ 0.03
SF3A1-202ENST00000411423 MT-ND4P03905 459 aa15.25■□□□□ 0.03
SF3A1-202ENST00000411423 VSIG10L2P0DP72 767 aa15.25■□□□□ 0.03
SF3A1-202ENST00000411423 GNG10P50151 68 aa15.25■□□□□ 0.03
SF3A1-202ENST00000411423 HERPUD1Q15011 391 aa15.25■□□□□ 0.03
SF3A1-202ENST00000411423 IZUMO2Q6UXV1 221 aa15.25■□□□□ 0.03
SF3A1-202ENST00000411423 ZNF497Q6ZNH5 498 aa15.25■□□□□ 0.03
SF3A1-202ENST00000411423 C5orf24Q7Z6I8 188 aa15.25■□□□□ 0.03
SF3A1-202ENST00000411423 OR9G1Q8NH87 305 aa15.25■□□□□ 0.03
SF3A1-202ENST00000411423 MMP28Q9H239 520 aa15.25■□□□□ 0.03
SF3A1-202ENST00000411423 KCNK15Q9H427 330 aa15.25■□□□□ 0.03
SF3A1-202ENST00000411423 PITPNC1Q9UKF7 332 aa15.25■□□□□ 0.03
SF3A1-202ENST00000411423 TMEM30CPA0ZSE6 113 aa15.24■□□□□ 0.03
SF3A1-202ENST00000411423 SH2D7A6NKC9 451 aaPredicted RBP15.24■□□□□ 0.03
SF3A1-202ENST00000411423 MGMTP16455 207 aa15.24■□□□□ 0.03
SF3A1-202ENST00000411423 CRHBPP24387 322 aa15.24■□□□□ 0.03
SF3A1-202ENST00000411423 MAP2K4P45985 399 aa15.24■□□□□ 0.03
SF3A1-202ENST00000411423 PRRX1P54821 245 aa15.24■□□□□ 0.03
SF3A1-202ENST00000411423 RPS25P62851 125 aaKnown RBP15.24■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms