RNA–Protein interactions for RNA: ENST00000409945.1

USP40-202, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-202ENST00000409945 FAM157CP0CG43 387 aa5.21□□□□□ -1.57
USP40-202ENST00000409945 CD36P16671 472 aa5.21□□□□□ -1.57
USP40-202ENST00000409945 DLK1P80370 383 aa5.21□□□□□ -1.57
USP40-202ENST00000409945 ST3GAL4Q11206 333 aa5.21□□□□□ -1.57
USP40-202ENST00000409945 GK2Q14410 553 aaPredicted RBP5.21□□□□□ -1.57
USP40-202ENST00000409945 SPCS2Q15005 226 aa5.21□□□□□ -1.57
USP40-202ENST00000409945 PCK2Q16822 640 aa5.21□□□□□ -1.57
USP40-202ENST00000409945 SLC25A30Q5SVS4 291 aa5.21□□□□□ -1.57
USP40-202ENST00000409945 OTPQ5XKR4 325 aa5.21□□□□□ -1.57
USP40-202ENST00000409945 SLC16A9Q7RTY1 509 aa5.21□□□□□ -1.57
USP40-202ENST00000409945 NFE4Q86UQ8 179 aa5.21□□□□□ -1.57
USP40-202ENST00000409945 OR8S1Q8NH09 359 aa5.21□□□□□ -1.57
USP40-202ENST00000409945 CLDND2Q8NHS1 167 aa5.21□□□□□ -1.57
USP40-202ENST00000409945 OTOSQ8NHW6 89 aa5.21□□□□□ -1.57
USP40-202ENST00000409945 RNF133Q8WVZ7 376 aa5.21□□□□□ -1.57
USP40-202ENST00000409945 YIPF5Q969M3 257 aa5.21□□□□□ -1.57
USP40-202ENST00000409945 ZMYND19Q96E35 227 aaPredicted RBP5.21□□□□□ -1.57
USP40-202ENST00000409945 MRPL48Q96GC5 212 aaKnown RBP5.21□□□□□ -1.57
USP40-202ENST00000409945 CNN2Q99439 309 aaKnown RBP5.21□□□□□ -1.57
USP40-202ENST00000409945 ZNF665Q9H7R5 613 aa5.21□□□□□ -1.57
USP40-202ENST00000409945 MED20Q9H944 212 aa5.21□□□□□ -1.57
USP40-202ENST00000409945 FN3KRPQ9HA64 309 aa5.21□□□□□ -1.57
USP40-202ENST00000409945 SDF2L1Q9HCN8 221 aa5.21□□□□□ -1.57
USP40-202ENST00000409945 HMG20AQ9NP66 347 aa5.21□□□□□ -1.57
USP40-202ENST00000409945 TMEM106BQ9NUM4 274 aa5.21□□□□□ -1.57
USP40-202ENST00000409945 RPL36Q9Y3U8 105 aaKnown RBP5.21□□□□□ -1.57
USP40-202ENST00000409945 WIPI2Q9Y4P8 454 aa5.21□□□□□ -1.57
USP40-202ENST00000409945 ZFHX3Q15911 3703 aa5.21□□□□□ -1.58
USP40-202ENST00000409945 ZANQ9Y493 2812 aa5.21□□□□□ -1.58
USP40-202ENST00000409945 A0A096LNT2 108 aa5.21□□□□□ -1.58
USP40-202ENST00000409945 IGLV9-49A0A0B4J1Y8 123 aa5.21□□□□□ -1.58
USP40-202ENST00000409945 A0A0G2JMP0 313 aa5.21□□□□□ -1.58
USP40-202ENST00000409945 A0A0X1KG70 313 aa5.21□□□□□ -1.58
USP40-202ENST00000409945 IRGMA1A4Y4 181 aa5.21□□□□□ -1.58
USP40-202ENST00000409945 ACOD1A6NK06 481 aa5.21□□□□□ -1.58
USP40-202ENST00000409945 CD300LBA8K4G0 201 aa5.21□□□□□ -1.58
USP40-202ENST00000409945 CIDEAO60543 219 aa5.21□□□□□ -1.58
USP40-202ENST00000409945 FCGR3BO75015 233 aa5.21□□□□□ -1.58
USP40-202ENST00000409945 FOXH1O75593 365 aa5.21□□□□□ -1.58
USP40-202ENST00000409945 RP2O75695 350 aa5.21□□□□□ -1.58
USP40-202ENST00000409945 MSMBP08118 114 aa5.21□□□□□ -1.58
USP40-202ENST00000409945 SBK2P0C263 348 aa5.21□□□□□ -1.58
USP40-202ENST00000409945 CLUP10909 449 aa5.21□□□□□ -1.58
USP40-202ENST00000409945 TGFBR2P37173 567 aa5.21□□□□□ -1.58
USP40-202ENST00000409945 MDH2P40926 338 aaKnown RBP5.21□□□□□ -1.58
USP40-202ENST00000409945 RPS27P42677 84 aaKnown RBP5.21□□□□□ -1.58
USP40-202ENST00000409945 AVPI1Q5T686 147 aa5.21□□□□□ -1.58
USP40-202ENST00000409945 RNLSQ5VYX0 342 aa5.21□□□□□ -1.58
USP40-202ENST00000409945 NXNL2Q5VZ03 156 aa5.21□□□□□ -1.58
USP40-202ENST00000409945 DEGS2Q6QHC5 323 aa5.21□□□□□ -1.58
USP40-202ENST00000409945 RFLNBQ8N5W9 214 aa5.21□□□□□ -1.58
USP40-202ENST00000409945 OR4M2Q8NGB6 313 aa5.21□□□□□ -1.58
USP40-202ENST00000409945 OR10AD1Q8NGE0 317 aa5.21□□□□□ -1.58
USP40-202ENST00000409945 ZNF671Q8TAW3 534 aa5.21□□□□□ -1.58
USP40-202ENST00000409945 ITLN1Q8WWA0 313 aa5.21□□□□□ -1.58
USP40-202ENST00000409945 TMEM186Q96B77 213 aa5.21□□□□□ -1.58
USP40-202ENST00000409945 LGALS12Q96DT0 336 aa5.21□□□□□ -1.58
USP40-202ENST00000409945 SLC30A2Q9BRI3 323 aa5.21□□□□□ -1.58
USP40-202ENST00000409945 UQCC2Q9BRT2 126 aa5.21□□□□□ -1.58
USP40-202ENST00000409945 ADAT1Q9BUB4 502 aaKnown RBP5.21□□□□□ -1.58
USP40-202ENST00000409945 MARCH7Q9H992 704 aa5.21□□□□□ -1.58
USP40-202ENST00000409945 TREM2Q9NZC2 230 aa5.21□□□□□ -1.58
USP40-202ENST00000409945 IKZF2Q9UKS7 526 aa5.21□□□□□ -1.58
USP40-202ENST00000409945 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP5.21□□□□□ -1.58
USP40-202ENST00000409945 CR1P17927 2039 aa5.2□□□□□ -1.58
USP40-202ENST00000409945 ZNF670-ZNF695F2Z2N8 137 aa5.2□□□□□ -1.58
USP40-202ENST00000409945 J3QLI3 93 aa5.2□□□□□ -1.58
USP40-202ENST00000409945 AIREO43918 545 aa5.2□□□□□ -1.58
USP40-202ENST00000409945 OTX1P32242 354 aaPredicted RBP5.2□□□□□ -1.58
USP40-202ENST00000409945 DUTP33316 252 aaKnown RBP5.2□□□□□ -1.58
USP40-202ENST00000409945 NAA10P41227 235 aaPredicted RBP5.2□□□□□ -1.58
USP40-202ENST00000409945 RIDAP52758 137 aaKnown RBP5.2□□□□□ -1.58
USP40-202ENST00000409945 KRTAP10-11P60412 298 aa5.2□□□□□ -1.58
USP40-202ENST00000409945 BTG1P62324 171 aa5.2□□□□□ -1.58
USP40-202ENST00000409945 GAGE5Q13069 117 aa5.2□□□□□ -1.58
USP40-202ENST00000409945 GAGE6Q13070 117 aa5.2□□□□□ -1.58
USP40-202ENST00000409945 ZNF846Q147U1 533 aa5.2□□□□□ -1.58
USP40-202ENST00000409945 ZNF181Q2M3W8 571 aa5.2□□□□□ -1.58
USP40-202ENST00000409945 KRTAP27-1Q3LI81 207 aa5.2□□□□□ -1.58
USP40-202ENST00000409945 TMEM155Q4W5P6 130 aa5.2□□□□□ -1.58
USP40-202ENST00000409945 FAM120AOSQ5T036 256 aa5.2□□□□□ -1.58
USP40-202ENST00000409945 LINC01590Q5TEZ4 76 aa5.2□□□□□ -1.58
USP40-202ENST00000409945 LIPNQ5VXI9 398 aa5.2□□□□□ -1.58
USP40-202ENST00000409945 TMEM236Q5W0B7 351 aa5.2□□□□□ -1.58
USP40-202ENST00000409945 USP43Q70EL4 1123 aa5.2□□□□□ -1.58
USP40-202ENST00000409945 NRARPQ7Z6K4 114 aa5.2□□□□□ -1.58
USP40-202ENST00000409945 ZNF554Q86TJ5 538 aa5.2□□□□□ -1.58
USP40-202ENST00000409945 TIGD4Q8IY51 512 aa5.2□□□□□ -1.58
USP40-202ENST00000409945 TCEANCQ8N8B7 351 aa5.2□□□□□ -1.58
USP40-202ENST00000409945 DMBX1Q8NFW5 382 aa5.2□□□□□ -1.58
USP40-202ENST00000409945 DYNC2LI1Q8TCX1 351 aa5.2□□□□□ -1.58
USP40-202ENST00000409945 REEP6Q96HR9 211 aa5.2□□□□□ -1.58
USP40-202ENST00000409945 TEAD3Q99594 435 aa5.2□□□□□ -1.58
USP40-202ENST00000409945 MICU1Q9BPX6 476 aa5.2□□□□□ -1.58
USP40-202ENST00000409945 MOB1AQ9H8S9 216 aa5.2□□□□□ -1.58
USP40-202ENST00000409945 AMBNQ9NP70 447 aa5.2□□□□□ -1.58
USP40-202ENST00000409945 DNAJC27Q9NZQ0 273 aa5.2□□□□□ -1.58
USP40-202ENST00000409945 MIOXQ9UGB7 285 aa5.2□□□□□ -1.58
USP40-202ENST00000409945 ERGIC3Q9Y282 383 aa5.2□□□□□ -1.58
USP40-202ENST00000409945 NAV3Q8IVL0 2385 aa5.2□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms