RNA–Protein interactions for RNA: ENST00000393310.5

LIMS1-203, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMS1, Length 4,392 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-203ENST00000393310 THY1P04216 161 aa7.04□□□□□ -1.28
LIMS1-203ENST00000393310 ESDP10768 282 aa7.04□□□□□ -1.28
LIMS1-203ENST00000393310 GNG4P50150 75 aa7.04□□□□□ -1.28
LIMS1-203ENST00000393310 SEC61A1P61619 476 aaKnown RBP7.04□□□□□ -1.28
LIMS1-203ENST00000393310 PDLIM3Q53GG5 364 aaPredicted RBP7.04□□□□□ -1.28
LIMS1-203ENST00000393310 NXNL2Q5VZ03 156 aa7.04□□□□□ -1.28
LIMS1-203ENST00000393310 DUX4L9Q6RFH8 374 aaPredicted RBP7.04□□□□□ -1.28
LIMS1-203ENST00000393310 IL34Q6ZMJ4 242 aa7.04□□□□□ -1.28
LIMS1-203ENST00000393310 Q6ZSR9 355 aa7.04□□□□□ -1.28
LIMS1-203ENST00000393310 ST6GALNAC6Q969X2 333 aa7.04□□□□□ -1.28
LIMS1-203ENST00000393310 DCTN5Q9BTE1 182 aa7.04□□□□□ -1.28
LIMS1-203ENST00000393310 CYSLTR1Q9Y271 337 aa7.04□□□□□ -1.28
LIMS1-203ENST00000393310 MED31Q9Y3C7 131 aa7.04□□□□□ -1.28
LIMS1-203ENST00000393310 CFAP47Q6ZTR5 3102 aa7.04□□□□□ -1.28
LIMS1-203ENST00000393310 CA2P00918 260 aa7.04□□□□□ -1.28
LIMS1-203ENST00000393310 SERPINE2P07093 398 aa7.04□□□□□ -1.28
LIMS1-203ENST00000393310 GPX3P22352 226 aa7.04□□□□□ -1.28
LIMS1-203ENST00000393310 BSPH1Q075Z2 132 aa7.04□□□□□ -1.28
LIMS1-203ENST00000393310 GUCA2BQ16661 112 aa7.04□□□□□ -1.28
LIMS1-203ENST00000393310 MEP1BQ16820 701 aa7.04□□□□□ -1.28
LIMS1-203ENST00000393310 C5orf64Q2M2E5 130 aa7.04□□□□□ -1.28
LIMS1-203ENST00000393310 ATRAIDQ6UW56 229 aa7.04□□□□□ -1.28
LIMS1-203ENST00000393310 OR4F6Q8NGB9 312 aa7.04□□□□□ -1.28
LIMS1-203ENST00000393310 RNASEH2CQ8TDP1 164 aaKnown RBP7.04□□□□□ -1.28
LIMS1-203ENST00000393310 FAM210BQ96KR6 192 aa7.04□□□□□ -1.28
LIMS1-203ENST00000393310 OXGR1Q96P68 337 aa7.04□□□□□ -1.28
LIMS1-203ENST00000393310 PITX2Q99697 317 aa7.04□□□□□ -1.28
LIMS1-203ENST00000393310 SRSF8Q9BRL6 282 aaKnown RBP7.04□□□□□ -1.28
LIMS1-203ENST00000393310 CDCA4Q9BXL8 241 aa7.04□□□□□ -1.28
LIMS1-203ENST00000393310 MRM2Q9UI43 246 aaKnown RBP7.04□□□□□ -1.28
LIMS1-203ENST00000393310 RNF11Q9Y3C5 154 aa7.04□□□□□ -1.28
LIMS1-203ENST00000393310 IRGMA1A4Y4 181 aa7.03□□□□□ -1.28
LIMS1-203ENST00000393310 HOXA5P20719 270 aa7.03□□□□□ -1.28
LIMS1-203ENST00000393310 GGTA1PQ4G0N0 100 aa7.03□□□□□ -1.28
LIMS1-203ENST00000393310 OR2T27Q8NH04 317 aa7.03□□□□□ -1.28
LIMS1-203ENST00000393310 BLNKQ8WV28 456 aa7.03□□□□□ -1.28
LIMS1-203ENST00000393310 DDOQ99489 341 aa7.03□□□□□ -1.28
LIMS1-203ENST00000393310 NKX3-1Q99801 234 aaPredicted RBP7.03□□□□□ -1.28
LIMS1-203ENST00000393310 NIPSNAP3BQ9BS92 247 aa7.03□□□□□ -1.28
LIMS1-203ENST00000393310 ZMAT4Q9H898 229 aa7.03□□□□□ -1.28
LIMS1-203ENST00000393310 ARID1BQ8NFD5 2236 aaPredicted RBP7.03□□□□□ -1.28
LIMS1-203ENST00000393310 CKAP5Q14008 2032 aa7.03□□□□□ -1.28
LIMS1-203ENST00000393310 A0A0B4J2A0 478 aa7.03□□□□□ -1.28
LIMS1-203ENST00000393310 ANKRD20A5PA0PJZ0 165 aa7.03□□□□□ -1.28
LIMS1-203ENST00000393310 P2RY10O00398 339 aa7.03□□□□□ -1.28
LIMS1-203ENST00000393310 PYCR1P32322 319 aa7.03□□□□□ -1.28
LIMS1-203ENST00000393310 PSMB10P40306 273 aa7.03□□□□□ -1.28
LIMS1-203ENST00000393310 HTR5AP47898 357 aa7.03□□□□□ -1.28
LIMS1-203ENST00000393310 CAMPP49913 170 aa7.03□□□□□ -1.28
LIMS1-203ENST00000393310 PCSK4Q6UW60 755 aa7.03□□□□□ -1.28
LIMS1-203ENST00000393310 CHST4Q8NCG5 386 aa7.03□□□□□ -1.28
LIMS1-203ENST00000393310 ZNF485Q8NCK3 441 aa7.03□□□□□ -1.28
LIMS1-203ENST00000393310 TBX15Q96SF7 602 aa7.03□□□□□ -1.28
LIMS1-203ENST00000393310 NOX4Q9NPH5 578 aa7.03□□□□□ -1.28
LIMS1-203ENST00000393310 C1orf123Q9NWV4 160 aa7.03□□□□□ -1.28
LIMS1-203ENST00000393310 SHPKQ9UHJ6 478 aa7.03□□□□□ -1.28
LIMS1-203ENST00000393310 TCRBV5S1A1TA0A578 114 aa7.03□□□□□ -1.28
LIMS1-203ENST00000393310 OR2F2O95006 317 aa7.03□□□□□ -1.28
LIMS1-203ENST00000393310 SCELO95171 688 aa7.03□□□□□ -1.28
LIMS1-203ENST00000393310 OR5H8P0DN80 308 aa7.03□□□□□ -1.28
LIMS1-203ENST00000393310 VPREB1P12018 145 aa7.03□□□□□ -1.28
LIMS1-203ENST00000393310 HOXB9P17482 250 aaPredicted RBP7.03□□□□□ -1.28
LIMS1-203ENST00000393310 CD69Q07108 199 aa7.03□□□□□ -1.28
LIMS1-203ENST00000393310 UBE2V2Q15819 145 aa7.03□□□□□ -1.28
LIMS1-203ENST00000393310 CT83Q5H943 113 aa7.03□□□□□ -1.28
LIMS1-203ENST00000393310 ZNF534Q76KX8 674 aa7.03□□□□□ -1.28
LIMS1-203ENST00000393310 BAGE3Q86Y29 109 aa7.03□□□□□ -1.28
LIMS1-203ENST00000393310 BAGE2Q86Y30 109 aa7.03□□□□□ -1.28
LIMS1-203ENST00000393310 MSMBP08118 114 aa7.02□□□□□ -1.29
LIMS1-203ENST00000393310 CD14P08571 375 aa7.02□□□□□ -1.29
LIMS1-203ENST00000393310 ADRA2AP08913 450 aa7.02□□□□□ -1.29
LIMS1-203ENST00000393310 RCC1P18754 421 aaPredicted RBP7.02□□□□□ -1.29
LIMS1-203ENST00000393310 PPOXP50336 477 aa7.02□□□□□ -1.29
LIMS1-203ENST00000393310 SELENOWP63302 87 aa7.02□□□□□ -1.29
LIMS1-203ENST00000393310 ZP4Q12836 540 aa7.02□□□□□ -1.29
LIMS1-203ENST00000393310 MFSD4AQ8N468 514 aa7.02□□□□□ -1.29
LIMS1-203ENST00000393310 CLDN22Q8N7P3 220 aa7.02□□□□□ -1.29
LIMS1-203ENST00000393310 MRAPQ8TCY5 172 aa7.02□□□□□ -1.29
LIMS1-203ENST00000393310 RAX2Q96IS3 184 aa7.02□□□□□ -1.29
LIMS1-203ENST00000393310 TXNIPQ9H3M7 391 aa7.02□□□□□ -1.29
LIMS1-203ENST00000393310 SPANXCQ9NY87 97 aa7.02□□□□□ -1.29
LIMS1-203ENST00000393310 NAT8Q9UHE5 227 aa7.02□□□□□ -1.29
LIMS1-203ENST00000393310 PAM16Q9Y3D7 125 aa7.02□□□□□ -1.29
LIMS1-203ENST00000393310 PRSS51A0A1B0GVH4 220 aa7.02□□□□□ -1.29
LIMS1-203ENST00000393310 A0A1W2PQD3 144 aa7.02□□□□□ -1.29
LIMS1-203ENST00000393310 FAM157AC9JC47 383 aa7.02□□□□□ -1.29
LIMS1-203ENST00000393310 ATP1B1P05026 303 aa7.02□□□□□ -1.29
LIMS1-203ENST00000393310 FRKP42685 505 aaPredicted RBP7.02□□□□□ -1.29
LIMS1-203ENST00000393310 GPM6AP51674 278 aa7.02□□□□□ -1.29
LIMS1-203ENST00000393310 CLDN18P56856 261 aa7.02□□□□□ -1.29
LIMS1-203ENST00000393310 RAB32Q13637 225 aa7.02□□□□□ -1.29
LIMS1-203ENST00000393310 ZNF107Q9UII5 783 aaPredicted RBP7.02□□□□□ -1.29
LIMS1-203ENST00000393310 RCE1Q9Y256 329 aa7.02□□□□□ -1.29
LIMS1-203ENST00000393310 LOC100130705A0A1B0GUX0 176 aa7.02□□□□□ -1.29
LIMS1-203ENST00000393310 SLC1A7O00341 560 aa7.02□□□□□ -1.29
LIMS1-203ENST00000393310 TNFSF12O43508 249 aa7.02□□□□□ -1.29
LIMS1-203ENST00000393310 SS18L1O75177 396 aaPredicted RBP7.02□□□□□ -1.29
LIMS1-203ENST00000393310 C1QCP02747 245 aa7.02□□□□□ -1.29
LIMS1-203ENST00000393310 SNRPBP14678 240 aaKnown RBP7.02□□□□□ -1.29
LIMS1-203ENST00000393310 GABRA5P31644 462 aa7.02□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 76.6 ms