RNA–Protein interactions for RNA: ENST00000376646.3

VPS13A-206, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 5 BASIC

Gene VPS13A, Length 2,262 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-206ENST00000376646 METTL17Q9H7H0 456 aaPredicted RBP1.01□□□□□ -2.25
VPS13A-206ENST00000376646 RHOFQ9HBH0 211 aa1.01□□□□□ -2.25
VPS13A-206ENST00000376646 MS4A12Q9NXJ0 267 aa1.01□□□□□ -2.25
VPS13A-206ENST00000376646 TBL2Q9Y4P3 447 aaKnown RBP1.01□□□□□ -2.25
VPS13A-206ENST00000376646 URGCP-MRPS24S4R325 110 aa1.01□□□□□ -2.25
VPS13A-206ENST00000376646 ATRNO75882 1429 aa1.01□□□□□ -2.25
VPS13A-206ENST00000376646 SHROOM3Q8TF72 1996 aa1.01□□□□□ -2.25
VPS13A-206ENST00000376646 IGKV3D-11A0A0A0MRZ8 115 aa1□□□□□ -2.25
VPS13A-206ENST00000376646 A6NED7 52 aa1□□□□□ -2.25
VPS13A-206ENST00000376646 C8orf87E5RJ46 101 aa1□□□□□ -2.25
VPS13A-206ENST00000376646 H3BMM0 161 aa1□□□□□ -2.25
VPS13A-206ENST00000376646 SMLR1H3BR10 107 aa1□□□□□ -2.25
VPS13A-206ENST00000376646 HLA-AP01891 365 aaKnown RBP1□□□□□ -2.25
VPS13A-206ENST00000376646 LIMS3P0CW19 117 aa1□□□□□ -2.25
VPS13A-206ENST00000376646 LIMS4P0CW20 117 aa1□□□□□ -2.25
VPS13A-206ENST00000376646 CRABP2P29373 138 aa1□□□□□ -2.25
VPS13A-206ENST00000376646 PYCR1P32322 319 aa1□□□□□ -2.25
VPS13A-206ENST00000376646 FOXA1P55317 472 aa1□□□□□ -2.25
VPS13A-206ENST00000376646 SYCP1Q15431 976 aa1□□□□□ -2.25
VPS13A-206ENST00000376646 KRTAP25-1Q3LHN0 102 aa1□□□□□ -2.25
VPS13A-206ENST00000376646 FAM162BQ5T6X4 162 aa1□□□□□ -2.25
VPS13A-206ENST00000376646 FAM19A3Q7Z5A8 133 aa1□□□□□ -2.25
VPS13A-206ENST00000376646 OR4A5Q8NH83 315 aa1□□□□□ -2.25
VPS13A-206ENST00000376646 RNASEH2CQ8TDP1 164 aaKnown RBP1□□□□□ -2.25
VPS13A-206ENST00000376646 PDCD6IPQ8WUM4 868 aaKnown RBP1□□□□□ -2.25
VPS13A-206ENST00000376646 RORBQ92753 470 aa1□□□□□ -2.25
VPS13A-206ENST00000376646 UBE2WQ96B02 151 aa1□□□□□ -2.25
VPS13A-206ENST00000376646 REEP6Q96HR9 211 aa1□□□□□ -2.25
VPS13A-206ENST00000376646 ATP6V1G3Q96LB4 118 aa1□□□□□ -2.25
VPS13A-206ENST00000376646 TM2D3Q9BRN9 247 aa1□□□□□ -2.25
VPS13A-206ENST00000376646 ABCG5Q9H222 651 aa1□□□□□ -2.25
VPS13A-206ENST00000376646 OR52A5Q9H2C5 316 aa1□□□□□ -2.25
VPS13A-206ENST00000376646 NRBP2Q9NSY0 501 aa1□□□□□ -2.25
VPS13A-206ENST00000376646 ZNF230Q9UIE0 474 aaPredicted RBP1□□□□□ -2.25
VPS13A-206ENST00000376646 CFAP45Q9UL16 551 aa1□□□□□ -2.25
VPS13A-206ENST00000376646 MYO15BQ96JP2 1530 aa1□□□□□ -2.25
VPS13A-206ENST00000376646 POLR3AO14802 1390 aaPredicted RBP1□□□□□ -2.25
VPS13A-206ENST00000376646 IGHV1-45A0A0A0MS14 117 aa1□□□□□ -2.25
VPS13A-206ENST00000376646 A0A1B0GTI1 187 aa1□□□□□ -2.25
VPS13A-206ENST00000376646 TRPC5OSA6NMA1 111 aa1□□□□□ -2.25
VPS13A-206ENST00000376646 GGTLC3B5MD39 225 aa1□□□□□ -2.25
VPS13A-206ENST00000376646 POP7O75817 140 aaKnown RBP1□□□□□ -2.25
VPS13A-206ENST00000376646 PDYNP01213 254 aa1□□□□□ -2.25
VPS13A-206ENST00000376646 IGHV3-53P01767 116 aa1□□□□□ -2.25
VPS13A-206ENST00000376646 EVI2BP34910 448 aa1□□□□□ -2.25
VPS13A-206ENST00000376646 RAB2AP61019 212 aa1□□□□□ -2.25
VPS13A-206ENST00000376646 PMS2P3Q13401 168 aa1□□□□□ -2.25
VPS13A-206ENST00000376646 CASP8Q14790 479 aa1□□□□□ -2.25
VPS13A-206ENST00000376646 BCL2A1Q16548 175 aa1□□□□□ -2.25
VPS13A-206ENST00000376646 TAF9Q16594 264 aa1□□□□□ -2.25
VPS13A-206ENST00000376646 Q6ZQT7 251 aa1□□□□□ -2.25
VPS13A-206ENST00000376646 COMTD1Q86VU5 262 aa1□□□□□ -2.25
VPS13A-206ENST00000376646 BOD1L2Q8IYS8 172 aa1□□□□□ -2.25
VPS13A-206ENST00000376646 EIF4E3Q8N5X7 224 aaKnown RBP1□□□□□ -2.25
VPS13A-206ENST00000376646 ACBD4Q8NC06 268 aa1□□□□□ -2.25
VPS13A-206ENST00000376646 ZNF738Q8NE65 137 aa1□□□□□ -2.25
VPS13A-206ENST00000376646 APOBEC3DQ96AK3 386 aaPredicted RBP1□□□□□ -2.25
VPS13A-206ENST00000376646 MED10Q9BTT4 135 aa1□□□□□ -2.25
VPS13A-206ENST00000376646 EBPLQ9BY08 206 aa1□□□□□ -2.25
VPS13A-206ENST00000376646 KRTAP4-1Q9BYQ7 146 aa1□□□□□ -2.25
VPS13A-206ENST00000376646 OR51E2Q9H255 320 aa1□□□□□ -2.25
VPS13A-206ENST00000376646 FBXL3Q9UKT7 428 aa1□□□□□ -2.25
VPS13A-206ENST00000376646 ZNF443Q9Y2A4 671 aaPredicted RBP1□□□□□ -2.25
VPS13A-206ENST00000376646 FADS3Q9Y5Q0 445 aa1□□□□□ -2.25
VPS13A-206ENST00000376646 U3KQK5 164 aa1□□□□□ -2.25
VPS13A-206ENST00000376646 ZSWIM8A7E2V4 1837 aa0.99□□□□□ -2.25
VPS13A-206ENST00000376646 KIAA0232Q92628 1395 aa0.99□□□□□ -2.25
VPS13A-206ENST00000376646 ZBED9Q6R2W3 1325 aa0.99□□□□□ -2.25
VPS13A-206ENST00000376646 OR5H14A6NHG9 310 aa0.99□□□□□ -2.25
VPS13A-206ENST00000376646 ARGFXA6NJG6 315 aa0.99□□□□□ -2.25
VPS13A-206ENST00000376646 EFCAB9A8MZ26 197 aa0.99□□□□□ -2.25
VPS13A-206ENST00000376646 GPR171O14626 319 aa0.99□□□□□ -2.25
VPS13A-206ENST00000376646 FGF16O43320 207 aa0.99□□□□□ -2.25
VPS13A-206ENST00000376646 MPZL2O60487 215 aa0.99□□□□□ -2.25
VPS13A-206ENST00000376646 CPSF4O95639 269 aaKnown RBP0.99□□□□□ -2.25
VPS13A-206ENST00000376646 EPPINO95925 133 aa0.99□□□□□ -2.25
VPS13A-206ENST00000376646 CTLA4P16410 223 aa0.99□□□□□ -2.25
VPS13A-206ENST00000376646 KDELR2P33947 212 aa0.99□□□□□ -2.25
VPS13A-206ENST00000376646 HSPA13P48723 471 aa0.99□□□□□ -2.25
VPS13A-206ENST00000376646 PSMD7P51665 324 aa0.99□□□□□ -2.25
VPS13A-206ENST00000376646 SLAMF1Q13291 335 aa0.99□□□□□ -2.25
VPS13A-206ENST00000376646 TMEM249Q2WGJ8 235 aa0.99□□□□□ -2.25
VPS13A-206ENST00000376646 SSX7Q7RTT5 188 aa0.99□□□□□ -2.25
VPS13A-206ENST00000376646 OR11G2Q8NGC1 345 aa0.99□□□□□ -2.25
VPS13A-206ENST00000376646 ANGPTL6Q8NI99 470 aa0.99□□□□□ -2.25
VPS13A-206ENST00000376646 MUC7Q8TAX7 377 aa0.99□□□□□ -2.25
VPS13A-206ENST00000376646 CLDN23Q96B33 292 aa0.99□□□□□ -2.25
VPS13A-206ENST00000376646 DDIT4LQ96D03 193 aa0.99□□□□□ -2.25
VPS13A-206ENST00000376646 SLC25A44Q96H78 314 aaPredicted RBP0.99□□□□□ -2.25
VPS13A-206ENST00000376646 TMEM56Q96MV1 263 aa0.99□□□□□ -2.25
VPS13A-206ENST00000376646 TRIB3Q96RU7 358 aa0.99□□□□□ -2.25
VPS13A-206ENST00000376646 POTEKPQ9BYX7 375 aa0.99□□□□□ -2.25
VPS13A-206ENST00000376646 SLC19A3Q9BZV2 496 aa0.99□□□□□ -2.25
VPS13A-206ENST00000376646 OR2D2Q9H210 308 aa0.99□□□□□ -2.25
VPS13A-206ENST00000376646 SPACA1Q9HBV2 294 aa0.99□□□□□ -2.25
VPS13A-206ENST00000376646 ASCL3Q9NQ33 180 aa0.99□□□□□ -2.25
VPS13A-206ENST00000376646 DNMT1P26358 1616 aaKnown RBP0.99□□□□□ -2.25
VPS13A-206ENST00000376646 SDK2Q58EX2 2172 aa0.99□□□□□ -2.25
VPS13A-206ENST00000376646 SPATA31E1Q6ZUB1 1445 aa0.99□□□□□ -2.25
VPS13A-206ENST00000376646 LRPPRCP42704 1394 aaKnown RBP0.99□□□□□ -2.25
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms