RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 MYO16Q9Y6X6 1858 aa3.13□□□□□ -1.91
SCN1A-221ENST00000641996 NOTCH2Q04721 2471 aa3.13□□□□□ -1.91
SCN1A-221ENST00000641996 A0A1B0GW64 132 aa3.13□□□□□ -1.91
SCN1A-221ENST00000641996 HOXC6P09630 235 aa3.13□□□□□ -1.91
SCN1A-221ENST00000641996 FURINP09958 794 aa3.13□□□□□ -1.91
SCN1A-221ENST00000641996 PSMB3P49720 205 aa3.13□□□□□ -1.91
SCN1A-221ENST00000641996 IHHQ14623 411 aa3.13□□□□□ -1.91
SCN1A-221ENST00000641996 CTF1Q16619 201 aa3.13□□□□□ -1.91
SCN1A-221ENST00000641996 ECSCRQ19T08 205 aa3.13□□□□□ -1.91
SCN1A-221ENST00000641996 OTPQ5XKR4 325 aa3.13□□□□□ -1.91
SCN1A-221ENST00000641996 TMEM139Q8IV31 216 aa3.13□□□□□ -1.91
SCN1A-221ENST00000641996 TMEM183AQ8IXX5 376 aa3.13□□□□□ -1.91
SCN1A-221ENST00000641996 SHISA5Q8N114 240 aa3.13□□□□□ -1.91
SCN1A-221ENST00000641996 OR51T1Q8NGJ9 327 aa3.13□□□□□ -1.91
SCN1A-221ENST00000641996 REEP1Q9H902 201 aa3.13□□□□□ -1.91
SCN1A-221ENST00000641996 CA10Q9NS85 328 aa3.13□□□□□ -1.91
SCN1A-221ENST00000641996 SNAPC4Q5SXM2 1469 aa3.13□□□□□ -1.91
SCN1A-221ENST00000641996 CD68P34810 354 aaPredicted RBP3.13□□□□□ -1.91
SCN1A-221ENST00000641996 ZNF77Q15935 545 aa3.13□□□□□ -1.91
SCN1A-221ENST00000641996 GAGE2AQ6NT46 116 aa3.13□□□□□ -1.91
SCN1A-221ENST00000641996 PRELID2Q8N945 189 aa3.13□□□□□ -1.91
SCN1A-221ENST00000641996 FEVQ99581 238 aa3.13□□□□□ -1.91
SCN1A-221ENST00000641996 GREM2Q9H772 168 aa3.13□□□□□ -1.91
SCN1A-221ENST00000641996 FZD1Q9UP38 647 aa3.13□□□□□ -1.91
SCN1A-221ENST00000641996 PIEZO2Q9H5I5 2752 aa3.13□□□□□ -1.91
SCN1A-221ENST00000641996 LOC100130705A0A1B0GUX0 176 aa3.13□□□□□ -1.91
SCN1A-221ENST00000641996 A0A1W2PS29 197 aa3.13□□□□□ -1.91
SCN1A-221ENST00000641996 HOXD9P28356 352 aaPredicted RBP3.13□□□□□ -1.91
SCN1A-221ENST00000641996 SUB1P53999 127 aaKnown RBP eCLIP3.13□□□□□ -1.91
SCN1A-221ENST00000641996 DVL1P1P54792 670 aaPredicted RBP3.13□□□□□ -1.91
SCN1A-221ENST00000641996 CCL23P55773 120 aa3.13□□□□□ -1.91
SCN1A-221ENST00000641996 MIIPQ5JXC2 388 aa3.13□□□□□ -1.91
SCN1A-221ENST00000641996 SLC36A1Q7Z2H8 476 aa3.13□□□□□ -1.91
SCN1A-221ENST00000641996 TMEM229BQ8NBD8 167 aa3.13□□□□□ -1.91
SCN1A-221ENST00000641996 OR4K5Q8NGD3 323 aa3.13□□□□□ -1.91
SCN1A-221ENST00000641996 CDH20Q9HBT6 801 aa3.13□□□□□ -1.91
SCN1A-221ENST00000641996 HIST1H2ABP04908 130 aa3.13□□□□□ -1.91
SCN1A-221ENST00000641996 GALR1P47211 349 aa3.13□□□□□ -1.91
SCN1A-221ENST00000641996 ZNF140P52738 457 aaPredicted RBP3.13□□□□□ -1.91
SCN1A-221ENST00000641996 IFITM3Q01628 133 aa3.13□□□□□ -1.91
SCN1A-221ENST00000641996 HIST3H2AQ7L7L0 130 aa3.13□□□□□ -1.91
SCN1A-221ENST00000641996 SPNS2Q8IVW8 549 aa3.13□□□□□ -1.91
SCN1A-221ENST00000641996 TTC9BQ8N6N2 239 aa3.13□□□□□ -1.91
SCN1A-221ENST00000641996 OR5A1Q8NGJ0 315 aa3.13□□□□□ -1.91
SCN1A-221ENST00000641996 PIPOXQ9P0Z9 390 aa3.13□□□□□ -1.91
SCN1A-221ENST00000641996 WRAP73Q9P2S5 460 aaPredicted RBP3.13□□□□□ -1.91
SCN1A-221ENST00000641996 REREQ9P2R6 1566 aa3.13□□□□□ -1.91
SCN1A-221ENST00000641996 TRGV10A0A0A0MS01 117 aa3.13□□□□□ -1.91
SCN1A-221ENST00000641996 DUXBA0A1W2PPF3 345 aa3.13□□□□□ -1.91
SCN1A-221ENST00000641996 H3BUT2 72 aa3.13□□□□□ -1.91
SCN1A-221ENST00000641996 GATD1Q8NB37 220 aa3.13□□□□□ -1.91
SCN1A-221ENST00000641996 OR51G1Q8NGK1 321 aa3.13□□□□□ -1.91
SCN1A-221ENST00000641996 OR5H2Q8NGV7 314 aa3.13□□□□□ -1.91
SCN1A-221ENST00000641996 ZNF714Q96N38 554 aa3.13□□□□□ -1.91
SCN1A-221ENST00000641996 COA1Q9GZY4 146 aa3.13□□□□□ -1.91
SCN1A-221ENST00000641996 SLC25A19Q9HC21 320 aa3.13□□□□□ -1.91
SCN1A-221ENST00000641996 NAIPQ13075 1403 aa3.13□□□□□ -1.91
SCN1A-221ENST00000641996 GFRA2O00451 464 aa3.13□□□□□ -1.91
SCN1A-221ENST00000641996 ZNF623O75123 536 aa3.13□□□□□ -1.91
SCN1A-221ENST00000641996 TAS2R46P59540 309 aa3.13□□□□□ -1.91
SCN1A-221ENST00000641996 KLRB1Q12918 225 aa3.13□□□□□ -1.91
SCN1A-221ENST00000641996 TIMM23BQ5SRD1 257 aa3.13□□□□□ -1.91
SCN1A-221ENST00000641996 SPATA31B1PQ5VZV4 182 aa3.13□□□□□ -1.91
SCN1A-221ENST00000641996 TMPRSS12Q86WS5 348 aa3.13□□□□□ -1.91
SCN1A-221ENST00000641996 OR1S1Q8NH92 325 aa3.13□□□□□ -1.91
SCN1A-221ENST00000641996 PTPMT1Q8WUK0 201 aaPredicted RBP3.13□□□□□ -1.91
SCN1A-221ENST00000641996 AGPAT1Q99943 283 aa3.13□□□□□ -1.91
SCN1A-221ENST00000641996 WDR61Q9GZS3 305 aaKnown RBP3.13□□□□□ -1.91
SCN1A-221ENST00000641996 IKZF5Q9H5V7 419 aa3.13□□□□□ -1.91
SCN1A-221ENST00000641996 HINT3Q9NQE9 182 aaKnown RBP3.13□□□□□ -1.91
SCN1A-221ENST00000641996 VAX2Q9UIW0 290 aa3.13□□□□□ -1.91
SCN1A-221ENST00000641996 ARAP1Q96P48 1450 aa3.13□□□□□ -1.91
SCN1A-221ENST00000641996 HOXA5P20719 270 aa3.13□□□□□ -1.91
SCN1A-221ENST00000641996 LY6KQ17RY6 165 aa3.13□□□□□ -1.91
SCN1A-221ENST00000641996 TMEM163Q8TC26 289 aa3.13□□□□□ -1.91
SCN1A-221ENST00000641996 ZG16BQ96DA0 208 aa3.13□□□□□ -1.91
SCN1A-221ENST00000641996 SLC35B3Q9H1N7 401 aa3.13□□□□□ -1.91
SCN1A-221ENST00000641996 CSAG2Q9Y5P2 127 aa3.13□□□□□ -1.91
SCN1A-221ENST00000641996 A0A1W2PR48 441 aa3.12□□□□□ -1.91
SCN1A-221ENST00000641996 MBD3L4A6NDZ8 208 aaPredicted RBP3.12□□□□□ -1.91
SCN1A-221ENST00000641996 MBD3L3A6NE82 208 aaPredicted RBP3.12□□□□□ -1.91
SCN1A-221ENST00000641996 MBD3L5A6NJ08 208 aaPredicted RBP3.12□□□□□ -1.91
SCN1A-221ENST00000641996 AMBPP02760 352 aa3.12□□□□□ -1.91
SCN1A-221ENST00000641996 CTSBP07858 339 aa3.12□□□□□ -1.91
SCN1A-221ENST00000641996 MPC1LP0DKB6 136 aa3.12□□□□□ -1.91
SCN1A-221ENST00000641996 GOLT1AQ6ZVE7 132 aa3.12□□□□□ -1.91
SCN1A-221ENST00000641996 MRGPREQ86SM8 312 aa3.12□□□□□ -1.91
SCN1A-221ENST00000641996 SPIN2AQ99865 258 aa3.12□□□□□ -1.91
SCN1A-221ENST00000641996 SPIN2BQ9BPZ2 258 aa3.12□□□□□ -1.91
SCN1A-221ENST00000641996 GGTLC1Q9BX51 225 aa3.12□□□□□ -1.91
SCN1A-221ENST00000641996 SYNGR1O43759 233 aa3.12□□□□□ -1.91
SCN1A-221ENST00000641996 RBMY1CP0DJD4 496 aa3.12□□□□□ -1.91
SCN1A-221ENST00000641996 PGA4P0DJD7 388 aa3.12□□□□□ -1.91
SCN1A-221ENST00000641996 PGA5P0DJD9 388 aa3.12□□□□□ -1.91
SCN1A-221ENST00000641996 ORM2P19652 201 aa3.12□□□□□ -1.91
SCN1A-221ENST00000641996 HERVK_113P61574 105 aa3.12□□□□□ -1.91
SCN1A-221ENST00000641996 ADAD2Q8NCV1 583 aaKnown RBP3.12□□□□□ -1.91
SCN1A-221ENST00000641996 TMEM106AQ96A25 262 aa3.12□□□□□ -1.91
SCN1A-221ENST00000641996 DPY30Q9C005 99 aa3.12□□□□□ -1.91
SCN1A-221ENST00000641996 PCTPQ9UKL6 214 aa3.12□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms