RNA–Protein interactions for RNA: ENST00000637578.1

CLN3-260, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,577 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-260ENST00000637578 CHCHD6Q9BRQ6 235 aa15.65■□□□□ 0.1
CLN3-260ENST00000637578 TXNL4BQ9NX01 149 aaKnown RBP15.65■□□□□ 0.1
CLN3-260ENST00000637578 SSR3Q9UNL2 185 aa15.65■□□□□ 0.1
CLN3-260ENST00000637578 SHISA3A0PJX4 238 aa15.64■□□□□ 0.09
CLN3-260ENST00000637578 CALCBP10092 127 aa15.64■□□□□ 0.09
CLN3-260ENST00000637578 ERP29P30040 261 aaKnown RBP15.64■□□□□ 0.09
CLN3-260ENST00000637578 EDDM3BP56851 147 aa15.64■□□□□ 0.09
CLN3-260ENST00000637578 AANATQ16613 207 aa15.64■□□□□ 0.09
CLN3-260ENST00000637578 CDH26Q8IXH8 852 aa15.64■□□□□ 0.09
CLN3-260ENST00000637578 PXT1Q8NFP0 134 aa15.64■□□□□ 0.09
CLN3-260ENST00000637578 OR4S1Q8NGB4 309 aa15.64■□□□□ 0.09
CLN3-260ENST00000637578 OR13F1Q8NGS4 319 aa15.64■□□□□ 0.09
CLN3-260ENST00000637578 GFI1Q99684 422 aa15.64■□□□□ 0.09
CLN3-260ENST00000637578 GLS2Q9UI32 602 aa15.64■□□□□ 0.09
CLN3-260ENST00000637578 LOC100506127A0A0U1RQW1 187 aa15.63■□□□□ 0.09
CLN3-260ENST00000637578 CLPSL1A2RUU4 121 aa15.63■□□□□ 0.09
CLN3-260ENST00000637578 FAM90A8PA6NJQ4 464 aa15.63■□□□□ 0.09
CLN3-260ENST00000637578 SH2D1BO14796 132 aa15.63■□□□□ 0.09
CLN3-260ENST00000637578 MGST3O14880 152 aa15.63■□□□□ 0.09
CLN3-260ENST00000637578 CDRT1O95170 752 aa15.63■□□□□ 0.09
CLN3-260ENST00000637578 TFAP2AP05549 437 aa15.63■□□□□ 0.09
CLN3-260ENST00000637578 GABRR1P24046 479 aa15.63■□□□□ 0.09
CLN3-260ENST00000637578 OR3A1P47881 315 aa15.63■□□□□ 0.09
CLN3-260ENST00000637578 GRK1Q15835 563 aa15.63■□□□□ 0.09
CLN3-260ENST00000637578 AK6Q9Y3D8 172 aaKnown RBP15.63■□□□□ 0.09
CLN3-260ENST00000637578 LINC00312Q9Y6C7 94 aa15.63■□□□□ 0.09
CLN3-260ENST00000637578 DSCAML1Q8TD84 2053 aa15.63■□□□□ 0.09
CLN3-260ENST00000637578 TRAV1-2A0A0B4J238 106 aa15.62■□□□□ 0.09
CLN3-260ENST00000637578 hADV38S2A0JD32 116 aa15.62■□□□□ 0.09
CLN3-260ENST00000637578 BTBD17A6NE02 478 aa15.62■□□□□ 0.09
CLN3-260ENST00000637578 OR2H2O95918 312 aa15.62■□□□□ 0.09
CLN3-260ENST00000637578 MYL9P24844 172 aa15.62■□□□□ 0.09
CLN3-260ENST00000637578 ALDH3B2P48448 385 aa15.62■□□□□ 0.09
CLN3-260ENST00000637578 PRR31Q5SQ13 230 aa15.62■□□□□ 0.09
CLN3-260ENST00000637578 OLFML2AQ68BL7 652 aa15.62■□□□□ 0.09
CLN3-260ENST00000637578 GLT8D1Q68CQ7 371 aa15.62■□□□□ 0.09
CLN3-260ENST00000637578 ASCL4Q6XD76 172 aa15.62■□□□□ 0.09
CLN3-260ENST00000637578 OR4D6Q8NGJ1 314 aa15.62■□□□□ 0.09
CLN3-260ENST00000637578 OR10K1Q8NGX5 313 aa15.62■□□□□ 0.09
CLN3-260ENST00000637578 WFDC12Q8WWY7 111 aa15.62■□□□□ 0.09
CLN3-260ENST00000637578 ZNF714Q96N38 554 aa15.62■□□□□ 0.09
CLN3-260ENST00000637578 UQCC2Q9BRT2 126 aa15.62■□□□□ 0.09
CLN3-260ENST00000637578 CENPOQ9BU64 300 aa15.62■□□□□ 0.09
CLN3-260ENST00000637578 CHST6Q9GZX3 395 aa15.62■□□□□ 0.09
CLN3-260ENST00000637578 RNF167Q9H6Y7 350 aa15.62■□□□□ 0.09
CLN3-260ENST00000637578 GSTK1Q9Y2Q3 226 aa15.62■□□□□ 0.09
CLN3-260ENST00000637578 MRPS28Q9Y2Q9 187 aaKnown RBP15.62■□□□□ 0.09
CLN3-260ENST00000637578 IGHV1-8P0DP01 117 aa15.62■□□□□ 0.09
CLN3-260ENST00000637578 BMXP51813 675 aa15.62■□□□□ 0.09
CLN3-260ENST00000637578 EDDM3AQ14507 147 aa15.62■□□□□ 0.09
CLN3-260ENST00000637578 TIMM50Q3ZCQ8 353 aa15.62■□□□□ 0.09
CLN3-260ENST00000637578 ELP2Q6IA86 826 aa15.62■□□□□ 0.09
CLN3-260ENST00000637578 Q6P435 159 aa15.62■□□□□ 0.09
CLN3-260ENST00000637578 ZNF782Q6ZMW2 699 aaPredicted RBP15.62■□□□□ 0.09
CLN3-260ENST00000637578 TPRX1Q8N7U7 411 aa15.62■□□□□ 0.09
CLN3-260ENST00000637578 OR11H6Q8NGC7 330 aa15.62■□□□□ 0.09
CLN3-260ENST00000637578 LINC01006Q8NI28 216 aa15.62■□□□□ 0.09
CLN3-260ENST00000637578 PPP1R35Q8TAP8 253 aa15.62■□□□□ 0.09
CLN3-260ENST00000637578 SSX3Q99909 188 aa15.62■□□□□ 0.09
CLN3-260ENST00000637578 C16orf95Q9H693 158 aa15.62■□□□□ 0.09
CLN3-260ENST00000637578 A0A0G2JK05 382 aa15.61■□□□□ 0.09
CLN3-260ENST00000637578 ODF3BA8MYP8 253 aa15.61■□□□□ 0.09
CLN3-260ENST00000637578 TSPAN9O75954 239 aa15.61■□□□□ 0.09
CLN3-260ENST00000637578 CD37P11049 281 aa15.61■□□□□ 0.09
CLN3-260ENST00000637578 COX7A1P24310 79 aa15.61■□□□□ 0.09
CLN3-260ENST00000637578 SNU13P55769 128 aaKnown RBP15.61■□□□□ 0.09
CLN3-260ENST00000637578 RSU1Q15404 277 aa15.61■□□□□ 0.09
CLN3-260ENST00000637578 AWAT2Q6E213 333 aa15.61■□□□□ 0.09
CLN3-260ENST00000637578 Q6ZSV7 163 aa15.61■□□□□ 0.09
CLN3-260ENST00000637578 Q8NFD4 153 aa15.61■□□□□ 0.09
CLN3-260ENST00000637578 OR13D1Q8NGV5 346 aa15.61■□□□□ 0.09
CLN3-260ENST00000637578 FOXRED1Q96CU9 486 aaPredicted RBP15.61■□□□□ 0.09
CLN3-260ENST00000637578 FUNDC2Q9BWH2 189 aa15.61■□□□□ 0.09
CLN3-260ENST00000637578 ING4Q9UNL4 249 aa15.61■□□□□ 0.09
CLN3-260ENST00000637578 TRRAPQ9Y4A5 3859 aa15.61■□□□□ 0.09
CLN3-260ENST00000637578 MEX3AA1L020 520 aaKnown RBP15.6■□□□□ 0.09
CLN3-260ENST00000637578 SIRPB1O00241 398 aa15.6■□□□□ 0.09
CLN3-260ENST00000637578 AIREO43918 545 aa15.6■□□□□ 0.09
CLN3-260ENST00000637578 CSN2P05814 226 aa15.6■□□□□ 0.09
CLN3-260ENST00000637578 P2RX3P56373 397 aa15.6■□□□□ 0.09
CLN3-260ENST00000637578 OR10A3P58181 314 aa15.6■□□□□ 0.09
CLN3-260ENST00000637578 LRRC75BQ2VPJ9 315 aa15.6■□□□□ 0.09
CLN3-260ENST00000637578 C1orf100Q5SVJ3 147 aa15.6■□□□□ 0.09
CLN3-260ENST00000637578 GLIPR1L1Q6UWM5 242 aa15.6■□□□□ 0.09
CLN3-260ENST00000637578 CHST4Q8NCG5 386 aa15.6■□□□□ 0.09
CLN3-260ENST00000637578 PIFOQ8TCI5 191 aa15.6■□□□□ 0.09
CLN3-260ENST00000637578 CORO2AQ92828 525 aa15.6■□□□□ 0.09
CLN3-260ENST00000637578 KCTD7Q96MP8 289 aa15.6■□□□□ 0.09
CLN3-260ENST00000637578 S100A13Q99584 98 aa15.6■□□□□ 0.09
CLN3-260ENST00000637578 METTL9Q9H1A3 318 aa15.6■□□□□ 0.09
CLN3-260ENST00000637578 IL36GQ9NZH8 169 aa15.6■□□□□ 0.09
CLN3-260ENST00000637578 UBE2J1Q9Y385 318 aaPredicted RBP15.6■□□□□ 0.09
CLN3-260ENST00000637578 VGLL3A8MV65 326 aa15.59■□□□□ 0.09
CLN3-260ENST00000637578 H3BUX3 64 aa15.59■□□□□ 0.09
CLN3-260ENST00000637578 HTR3BO95264 441 aa15.59■□□□□ 0.09
CLN3-260ENST00000637578 MTNR1BP49286 362 aa15.59■□□□□ 0.09
CLN3-260ENST00000637578 LGALS4P56470 323 aa15.59■□□□□ 0.09
CLN3-260ENST00000637578 SLC22A6Q4U2R8 563 aa15.59■□□□□ 0.09
CLN3-260ENST00000637578 ZNF626Q68DY1 528 aa15.59■□□□□ 0.09
CLN3-260ENST00000637578 DHRS7BQ6IAN0 325 aaPredicted RBP15.59■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms