RNA–Protein interactions for RNA: ENST00000628023.3

CLN3-239, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,183 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-239ENST00000628023 IFT22Q9H7X7 185 aa14.86□□□□□ -0.03
CLN3-239ENST00000628023 METTL8Q9H825 291 aaKnown RBP14.86□□□□□ -0.03
CLN3-239ENST00000628023 SPACA1Q9HBV2 294 aa14.86□□□□□ -0.03
CLN3-239ENST00000628023 ZNF581Q9P0T4 197 aa14.86□□□□□ -0.03
CLN3-239ENST00000628023 STEAP1Q9UHE8 339 aa14.86□□□□□ -0.03
CLN3-239ENST00000628023 TRGV10A0A0A0MS01 117 aa14.85□□□□□ -0.03
CLN3-239ENST00000628023 FSHBP01225 129 aa14.85□□□□□ -0.03
CLN3-239ENST00000628023 CSN2P05814 226 aa14.85□□□□□ -0.03
CLN3-239ENST00000628023 CD37P11049 281 aa14.85□□□□□ -0.03
CLN3-239ENST00000628023 KCNJ3P48549 501 aa14.85□□□□□ -0.03
CLN3-239ENST00000628023 KLF17Q5JT82 389 aaPredicted RBP14.85□□□□□ -0.03
CLN3-239ENST00000628023 TPRA1Q86W33 373 aa14.85□□□□□ -0.03
CLN3-239ENST00000628023 PDZD9Q8IXQ8 264 aa14.85□□□□□ -0.03
CLN3-239ENST00000628023 SLC25A28Q96A46 364 aa14.85□□□□□ -0.03
CLN3-239ENST00000628023 FAM3DQ96BQ1 224 aa14.85□□□□□ -0.03
CLN3-239ENST00000628023 ZNF714Q96N38 554 aa14.85□□□□□ -0.03
CLN3-239ENST00000628023 CENPOQ9BU64 300 aa14.85□□□□□ -0.03
CLN3-239ENST00000628023 BARHL1Q9BZE3 327 aa14.85□□□□□ -0.03
CLN3-239ENST00000628023 MS4A7Q9GZW8 240 aaPredicted RBP14.85□□□□□ -0.03
CLN3-239ENST00000628023 LINC00312Q9Y6C7 94 aa14.85□□□□□ -0.03
CLN3-239ENST00000628023 ODAMA1E959 279 aa14.84□□□□□ -0.03
CLN3-239ENST00000628023 FAM90A10PA6NDY2 464 aa14.84□□□□□ -0.03
CLN3-239ENST00000628023 FAM90A18PA6NE21 464 aa14.84□□□□□ -0.03
CLN3-239ENST00000628023 FAM90A16PA6NEW6 464 aa14.84□□□□□ -0.03
CLN3-239ENST00000628023 FAM90A20PA6NIJ5 464 aa14.84□□□□□ -0.03
CLN3-239ENST00000628023 FAM90A8PA6NJQ4 464 aa14.84□□□□□ -0.03
CLN3-239ENST00000628023 FAM90A7PA6NKC0 464 aa14.84□□□□□ -0.03
CLN3-239ENST00000628023 IFITM5A6NNB3 132 aa14.84□□□□□ -0.03
CLN3-239ENST00000628023 FAM90A22PA8MWA6 464 aa14.84□□□□□ -0.03
CLN3-239ENST00000628023 FAM90A12PA8MX19 464 aa14.84□□□□□ -0.03
CLN3-239ENST00000628023 FAM90A5PA8MXJ8 464 aa14.84□□□□□ -0.03
CLN3-239ENST00000628023 FAM90A23PA8MXZ1 464 aa14.84□□□□□ -0.03
CLN3-239ENST00000628023 H3BUI4 141 aa14.84□□□□□ -0.03
CLN3-239ENST00000628023 AIPO00170 330 aa14.84□□□□□ -0.03
CLN3-239ENST00000628023 VENTXO95231 258 aa14.84□□□□□ -0.03
CLN3-239ENST00000628023 FAM90A15PP0C7V4 464 aa14.84□□□□□ -0.03
CLN3-239ENST00000628023 FAM90A13PP0C7W8 464 aa14.84□□□□□ -0.03
CLN3-239ENST00000628023 FAM90A14PP0C7W9 464 aa14.84□□□□□ -0.03
CLN3-239ENST00000628023 FAM90A24PP0C7X0 464 aa14.84□□□□□ -0.03
CLN3-239ENST00000628023 ZNF728P0DKX0 622 aa14.84□□□□□ -0.03
CLN3-239ENST00000628023 FPR2P25090 351 aa14.84□□□□□ -0.03
CLN3-239ENST00000628023 SDC2P34741 201 aa14.84□□□□□ -0.03
CLN3-239ENST00000628023 GLIPR1P48060 266 aa14.84□□□□□ -0.03
CLN3-239ENST00000628023 RPS27AP62979 156 aaKnown RBP14.84□□□□□ -0.03
CLN3-239ENST00000628023 MXD1Q05195 221 aa14.84□□□□□ -0.03
CLN3-239ENST00000628023 NKAPLQ5M9Q1 402 aa14.84□□□□□ -0.03
CLN3-239ENST00000628023 NCR3LG1Q68D85 454 aa14.84□□□□□ -0.03
CLN3-239ENST00000628023 RAB12Q6IQ22 244 aa14.84□□□□□ -0.03
CLN3-239ENST00000628023 GDPGP1Q6ZNW5 385 aa14.84□□□□□ -0.03
CLN3-239ENST00000628023 OR2W3Q7Z3T1 314 aa14.84□□□□□ -0.03
CLN3-239ENST00000628023 OR51D1Q8NGF3 324 aa14.84□□□□□ -0.03
CLN3-239ENST00000628023 C22orf15Q8WYQ4 148 aa14.84□□□□□ -0.03
CLN3-239ENST00000628023 URM1Q9BTM9 101 aaKnown RBP14.84□□□□□ -0.03
CLN3-239ENST00000628023 RNF167Q9H6Y7 350 aa14.84□□□□□ -0.03
CLN3-239ENST00000628023 MEIKINA0A087WXM9 373 aa14.83□□□□□ -0.04
CLN3-239ENST00000628023 NOTOA8MTQ0 251 aa14.83□□□□□ -0.04
CLN3-239ENST00000628023 TMEM14DPA8MWL7 114 aa14.83□□□□□ -0.04
CLN3-239ENST00000628023 MCRIP1C9JLW8 97 aa14.83□□□□□ -0.04
CLN3-239ENST00000628023 GLP1RP43220 463 aa14.83□□□□□ -0.04
CLN3-239ENST00000628023 DLX1P56177 255 aa14.83□□□□□ -0.04
CLN3-239ENST00000628023 LSM3P62310 102 aaKnown RBP14.83□□□□□ -0.04
CLN3-239ENST00000628023 GUCA2AQ02747 115 aa14.83□□□□□ -0.04
CLN3-239ENST00000628023 PRB3Q04118 309 aaPredicted RBP14.83□□□□□ -0.04
CLN3-239ENST00000628023 UNC119Q13432 240 aa14.83□□□□□ -0.04
CLN3-239ENST00000628023 RBM39Q14498 530 aaKnown RBP14.83□□□□□ -0.04
CLN3-239ENST00000628023 BRICD5Q6PL45 260 aa14.83□□□□□ -0.04
CLN3-239ENST00000628023 C1orf122Q6ZSJ8 110 aa14.83□□□□□ -0.04
CLN3-239ENST00000628023 Q8N7P7 452 aa14.83□□□□□ -0.04
CLN3-239ENST00000628023 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP14.83□□□□□ -0.04
CLN3-239ENST00000628023 OR13F1Q8NGS4 319 aa14.83□□□□□ -0.04
CLN3-239ENST00000628023 COQ2Q96H96 371 aa14.83□□□□□ -0.04
CLN3-239ENST00000628023 NEDD4LQ96PU5 975 aa14.83□□□□□ -0.04
CLN3-239ENST00000628023 JMJD8Q96S16 334 aa14.83□□□□□ -0.04
CLN3-239ENST00000628023 GAL3ST2Q9H3Q3 398 aa14.83□□□□□ -0.04
CLN3-239ENST00000628023 OR6C3Q9NZP0 311 aa14.83□□□□□ -0.04
CLN3-239ENST00000628023 KIF25Q9UIL4 384 aa14.83□□□□□ -0.04
CLN3-239ENST00000628023 UBE2J1Q9Y385 318 aaPredicted RBP14.83□□□□□ -0.04
CLN3-239ENST00000628023 PEX16Q9Y5Y5 336 aa14.83□□□□□ -0.04
CLN3-239ENST00000628023 PDCD6O75340 191 aa14.82□□□□□ -0.04
CLN3-239ENST00000628023 FUT3P21217 361 aa14.82□□□□□ -0.04
CLN3-239ENST00000628023 PRTN3P24158 256 aa14.82□□□□□ -0.04
CLN3-239ENST00000628023 ERVFRD-1P60508 538 aa14.82□□□□□ -0.04
CLN3-239ENST00000628023 ACTG1P63261 375 aa14.82□□□□□ -0.04
CLN3-239ENST00000628023 KLRD1Q13241 179 aa14.82□□□□□ -0.04
CLN3-239ENST00000628023 C2orf76Q3KRA6 126 aa14.82□□□□□ -0.04
CLN3-239ENST00000628023 RUSC1-AS1Q66K80 236 aa14.82□□□□□ -0.04
CLN3-239ENST00000628023 BRD3OSQ6XYD6 125 aa14.82□□□□□ -0.04
CLN3-239ENST00000628023 TCF23Q7RTU1 214 aa14.82□□□□□ -0.04
CLN3-239ENST00000628023 PLPPR1Q8TBJ4 325 aa14.82□□□□□ -0.04
CLN3-239ENST00000628023 SLC6A7Q99884 636 aa14.82□□□□□ -0.04
CLN3-239ENST00000628023 FUNDC2Q9BWH2 189 aa14.82□□□□□ -0.04
CLN3-239ENST00000628023 LIN7BQ9HAP6 207 aa14.82□□□□□ -0.04
CLN3-239ENST00000628023 RCC2Q9P258 522 aaKnown RBP14.82□□□□□ -0.04
CLN3-239ENST00000628023 ZNF69Q9UC07 566 aa14.82□□□□□ -0.04
CLN3-239ENST00000628023 IGHV1-69DA0A0B4J2H0 117 aa14.81□□□□□ -0.04
CLN3-239ENST00000628023 CENPVL3A0A0U1RRI6 287 aa14.81□□□□□ -0.04
CLN3-239ENST00000628023 TMEM272A0A1B0GTI8 110 aa14.81□□□□□ -0.04
CLN3-239ENST00000628023 TMEM30CPA0ZSE6 113 aa14.81□□□□□ -0.04
CLN3-239ENST00000628023 TRIM77I1YAP6 450 aa14.81□□□□□ -0.04
CLN3-239ENST00000628023 IGHV1-69P01742 117 aa14.81□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 95 ms