RNA–Protein interactions for RNA: ENST00000600840.1

TRIM28-214, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 338 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-214ENST00000600840 CEACAM18A8MTB9 384 aa7.22□□□□□ -1.25
TRIM28-214ENST00000600840 RFPL4AL1F8VTS6 287 aa7.22□□□□□ -1.25
TRIM28-214ENST00000600840 SIGLEC5O15389 551 aa7.22□□□□□ -1.25
TRIM28-214ENST00000600840 PSPNO60542 156 aa7.22□□□□□ -1.25
TRIM28-214ENST00000600840 ZNF780AO75290 641 aaPredicted RBP7.22□□□□□ -1.25
TRIM28-214ENST00000600840 BPNT1O95861 308 aa7.22□□□□□ -1.25
TRIM28-214ENST00000600840 PAHP00439 452 aa7.22□□□□□ -1.25
TRIM28-214ENST00000600840 GYPAP02724 150 aa7.22□□□□□ -1.25
TRIM28-214ENST00000600840 UBBP0CG47 229 aa7.22□□□□□ -1.25
TRIM28-214ENST00000600840 CPT2P23786 658 aa7.22□□□□□ -1.25
TRIM28-214ENST00000600840 DUSP1P28562 367 aa7.22□□□□□ -1.25
TRIM28-214ENST00000600840 PRDX2P32119 198 aa7.22□□□□□ -1.25
TRIM28-214ENST00000600840 MDH2P40926 338 aaKnown RBP7.22□□□□□ -1.25
TRIM28-214ENST00000600840 EFNB2P52799 333 aa7.22□□□□□ -1.25
TRIM28-214ENST00000600840 TMEM50BP56557 158 aa7.22□□□□□ -1.25
TRIM28-214ENST00000600840 RPS27AP62979 156 aaKnown RBP7.22□□□□□ -1.25
TRIM28-214ENST00000600840 UBA52P62987 128 aaKnown RBP7.22□□□□□ -1.25
TRIM28-214ENST00000600840 IFITM3Q01628 133 aa7.22□□□□□ -1.25
TRIM28-214ENST00000600840 PDCD1Q15116 288 aa7.22□□□□□ -1.25
TRIM28-214ENST00000600840 P2RY14Q15391 338 aa7.22□□□□□ -1.25
TRIM28-214ENST00000600840 RAB11BQ15907 218 aa7.22□□□□□ -1.25
TRIM28-214ENST00000600840 PIGYQ3MUY2 71 aa7.22□□□□□ -1.25
TRIM28-214ENST00000600840 SPIN3Q5JUX0 258 aa7.22□□□□□ -1.25
TRIM28-214ENST00000600840 MZT2BQ6NZ67 158 aa7.22□□□□□ -1.25
TRIM28-214ENST00000600840 SHISA2Q6UWI4 295 aa7.22□□□□□ -1.25
TRIM28-214ENST00000600840 C17orf107Q6ZR85 190 aa7.22□□□□□ -1.25
TRIM28-214ENST00000600840 OR2W3Q7Z3T1 314 aa7.22□□□□□ -1.25
TRIM28-214ENST00000600840 AKAP14Q86UN6 197 aa7.22□□□□□ -1.25
TRIM28-214ENST00000600840 OSR2Q8N2R0 312 aa7.22□□□□□ -1.25
TRIM28-214ENST00000600840 FGFRL1Q8N441 504 aa7.22□□□□□ -1.25
TRIM28-214ENST00000600840 SIGLECL1Q8N7X8 197 aa7.22□□□□□ -1.25
TRIM28-214ENST00000600840 PNLDC1Q8NA58 520 aaKnown RBP7.22□□□□□ -1.25
TRIM28-214ENST00000600840 OR5H6Q8NGV6 325 aa7.22□□□□□ -1.25
TRIM28-214ENST00000600840 PTX4Q96A99 478 aa7.22□□□□□ -1.25
TRIM28-214ENST00000600840 CMTM3Q96MX0 182 aa7.22□□□□□ -1.25
TRIM28-214ENST00000600840 GAFA1Q96PS6 74 aa7.22□□□□□ -1.25
TRIM28-214ENST00000600840 CCL13Q99616 98 aa7.22□□□□□ -1.25
TRIM28-214ENST00000600840 SRRQ9GZT4 340 aa7.22□□□□□ -1.25
TRIM28-214ENST00000600840 LIN7BQ9HAP6 207 aa7.22□□□□□ -1.25
TRIM28-214ENST00000600840 POLR3KQ9Y2Y1 108 aaPredicted RBP7.22□□□□□ -1.25
TRIM28-214ENST00000600840 TRAV24A0A0B4J272 114 aa7.21□□□□□ -1.26
TRIM28-214ENST00000600840 PPIAL4CA0A0B4J2A2 164 aa7.21□□□□□ -1.26
TRIM28-214ENST00000600840 TMEM272A0A1B0GTI8 110 aa7.21□□□□□ -1.26
TRIM28-214ENST00000600840 FABP12A6NFH5 140 aa7.21□□□□□ -1.26
TRIM28-214ENST00000600840 A8MXK9 166 aa7.21□□□□□ -1.26
TRIM28-214ENST00000600840 RAB27BO00194 218 aa7.21□□□□□ -1.26
TRIM28-214ENST00000600840 NDUFA2O43678 99 aa7.21□□□□□ -1.26
TRIM28-214ENST00000600840 FOXH1O75593 365 aa7.21□□□□□ -1.26
TRIM28-214ENST00000600840 TPPPO94811 219 aa7.21□□□□□ -1.26
TRIM28-214ENST00000600840 NXPH2O95156 264 aa7.21□□□□□ -1.26
TRIM28-214ENST00000600840 HTR3BO95264 441 aa7.21□□□□□ -1.26
TRIM28-214ENST00000600840 HLA-DQB1P01920 261 aa7.21□□□□□ -1.26
TRIM28-214ENST00000600840 IGHV4-38-2P0DP08 117 aa7.21□□□□□ -1.26
TRIM28-214ENST00000600840 SELLP14151 372 aa7.21□□□□□ -1.26
TRIM28-214ENST00000600840 IRF2P14316 349 aa7.21□□□□□ -1.26
TRIM28-214ENST00000600840 SNRPBP14678 240 aaKnown RBP7.21□□□□□ -1.26
TRIM28-214ENST00000600840 ARSBP15848 533 aa7.21□□□□□ -1.26
TRIM28-214ENST00000600840 MGMTP16455 207 aa7.21□□□□□ -1.26
TRIM28-214ENST00000600840 GATA3P23771 443 aa7.21□□□□□ -1.26
TRIM28-214ENST00000600840 TALDO1P37837 337 aa7.21□□□□□ -1.26
TRIM28-214ENST00000600840 CEBPDP49716 269 aaPredicted RBP7.21□□□□□ -1.26
TRIM28-214ENST00000600840 RBM11P57052 281 aaKnown RBP7.21□□□□□ -1.26
TRIM28-214ENST00000600840 SCAND1P57086 179 aa7.21□□□□□ -1.26
TRIM28-214ENST00000600840 PAX8Q06710 450 aa7.21□□□□□ -1.26
TRIM28-214ENST00000600840 GPR176Q14439 515 aa7.21□□□□□ -1.26
TRIM28-214ENST00000600840 IL13RA2Q14627 380 aa7.21□□□□□ -1.26
TRIM28-214ENST00000600840 RSU1Q15404 277 aa7.21□□□□□ -1.26
TRIM28-214ENST00000600840 MICBQ29980 383 aa7.21□□□□□ -1.26
TRIM28-214ENST00000600840 SLC22A6Q4U2R8 563 aa7.21□□□□□ -1.26
TRIM28-214ENST00000600840 AWAT2Q6E213 333 aa7.21□□□□□ -1.26
TRIM28-214ENST00000600840 FAM131AQ6UXB0 335 aa7.21□□□□□ -1.26
TRIM28-214ENST00000600840 RTN4RL2Q86UN3 420 aa7.21□□□□□ -1.26
TRIM28-214ENST00000600840 CADM3Q8N126 398 aa7.21□□□□□ -1.26
TRIM28-214ENST00000600840 OR8H2Q8N162 312 aa7.21□□□□□ -1.26
TRIM28-214ENST00000600840 BOLLQ8N9W6 283 aaKnown RBP7.21□□□□□ -1.26
TRIM28-214ENST00000600840 KCNG3Q8TAE7 436 aa7.21□□□□□ -1.26
TRIM28-214ENST00000600840 EMG1Q92979 244 aaKnown RBP7.21□□□□□ -1.26
TRIM28-214ENST00000600840 SLC25A38Q96DW6 304 aa7.21□□□□□ -1.26
TRIM28-214ENST00000600840 DIRAS2Q96HU8 199 aa7.21□□□□□ -1.26
TRIM28-214ENST00000600840 NICN1Q9BSH3 213 aa7.21□□□□□ -1.26
TRIM28-214ENST00000600840 SUCNR1Q9BXA5 334 aa7.21□□□□□ -1.26
TRIM28-214ENST00000600840 BANF2Q9H503 90 aa7.21□□□□□ -1.26
TRIM28-214ENST00000600840 RCC2Q9P258 522 aaKnown RBP7.21□□□□□ -1.26
TRIM28-214ENST00000600840 SPATA2Q9UM82 520 aa7.21□□□□□ -1.26
TRIM28-214ENST00000600840 ST3GAL6Q9Y274 331 aa7.21□□□□□ -1.26
TRIM28-214ENST00000600840 AUP1Q9Y679 476 aa7.21□□□□□ -1.26
TRIM28-214ENST00000600840 V9GYH0 126 aa7.21□□□□□ -1.26
TRIM28-214ENST00000600840 TRRAPQ9Y4A5 3859 aa7.21□□□□□ -1.26
TRIM28-214ENST00000600840 MDFIC2A0A1B0GVS7 189 aa7.2□□□□□ -1.26
TRIM28-214ENST00000600840 FAM90A10PA6NDY2 464 aa7.2□□□□□ -1.26
TRIM28-214ENST00000600840 FAM90A18PA6NE21 464 aa7.2□□□□□ -1.26
TRIM28-214ENST00000600840 FAM90A16PA6NEW6 464 aa7.2□□□□□ -1.26
TRIM28-214ENST00000600840 FAM90A20PA6NIJ5 464 aa7.2□□□□□ -1.26
TRIM28-214ENST00000600840 FAM90A8PA6NJQ4 464 aa7.2□□□□□ -1.26
TRIM28-214ENST00000600840 FAM90A7PA6NKC0 464 aa7.2□□□□□ -1.26
TRIM28-214ENST00000600840 FAM90A22PA8MWA6 464 aa7.2□□□□□ -1.26
TRIM28-214ENST00000600840 FAM90A12PA8MX19 464 aa7.2□□□□□ -1.26
TRIM28-214ENST00000600840 FAM90A5PA8MXJ8 464 aa7.2□□□□□ -1.26
TRIM28-214ENST00000600840 FAM90A23PA8MXZ1 464 aa7.2□□□□□ -1.26
TRIM28-214ENST00000600840 K7N7A8 449 aa7.2□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms