RNA–Protein interactions for RNA: ENST00000595974.5

TRIM28-206, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 665 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-206ENST00000595974 PAX5Q02548 391 aa13.15□□□□□ -0.3
TRIM28-206ENST00000595974 GPR176Q14439 515 aa13.15□□□□□ -0.3
TRIM28-206ENST00000595974 OR52W1Q6IF63 320 aa13.15□□□□□ -0.3
TRIM28-206ENST00000595974 HEPN1Q6WQI6 88 aa13.15□□□□□ -0.3
TRIM28-206ENST00000595974 LHFPL4Q7Z7J7 247 aa13.15□□□□□ -0.3
TRIM28-206ENST00000595974 JAGN1Q8N5M9 183 aa13.15□□□□□ -0.3
TRIM28-206ENST00000595974 OR5M11Q96RB7 305 aa13.15□□□□□ -0.3
TRIM28-206ENST00000595974 SLITRK2Q9H156 845 aa13.15□□□□□ -0.3
TRIM28-206ENST00000595974 NCOR1P1Q9H4R4 102 aa13.15□□□□□ -0.3
TRIM28-206ENST00000595974 IFT22Q9H7X7 185 aa13.15□□□□□ -0.3
TRIM28-206ENST00000595974 OR6C3Q9NZP0 311 aa13.15□□□□□ -0.3
TRIM28-206ENST00000595974 ST3GAL6Q9Y274 331 aa13.15□□□□□ -0.3
TRIM28-206ENST00000595974 A0A1W2PPK0 400 aa13.14□□□□□ -0.31
TRIM28-206ENST00000595974 ZNF729A6NN14 1252 aaPredicted RBP13.14□□□□□ -0.31
TRIM28-206ENST00000595974 VGLL3A8MV65 326 aa13.14□□□□□ -0.31
TRIM28-206ENST00000595974 HSPB6O14558 160 aa13.14□□□□□ -0.31
TRIM28-206ENST00000595974 PIN1P1O15428 100 aa13.14□□□□□ -0.31
TRIM28-206ENST00000595974 ATP6V1G2O95670 118 aa13.14□□□□□ -0.31
TRIM28-206ENST00000595974 CRHBPP24387 322 aa13.14□□□□□ -0.31
TRIM28-206ENST00000595974 DYNC1I2Q13409 638 aaKnown RBP13.14□□□□□ -0.31
TRIM28-206ENST00000595974 GPR50Q13585 617 aa13.14□□□□□ -0.31
TRIM28-206ENST00000595974 MED22Q15528 200 aa13.14□□□□□ -0.31
TRIM28-206ENST00000595974 MPV17LQ2QL34 196 aa13.14□□□□□ -0.31
TRIM28-206ENST00000595974 SLC22A6Q4U2R8 563 aa13.14□□□□□ -0.31
TRIM28-206ENST00000595974 MINOS1Q5TGZ0 78 aa13.14□□□□□ -0.31
TRIM28-206ENST00000595974 MUL1Q969V5 352 aa13.14□□□□□ -0.31
TRIM28-206ENST00000595974 MALSU1Q96EH3 234 aa13.14□□□□□ -0.31
TRIM28-206ENST00000595974 CLEC7AQ9BXN2 247 aa13.14□□□□□ -0.31
TRIM28-206ENST00000595974 PPIL3Q9H2H8 161 aaKnown RBP13.14□□□□□ -0.31
TRIM28-206ENST00000595974 MRPS28Q9Y2Q9 187 aaKnown RBP13.14□□□□□ -0.31
TRIM28-206ENST00000595974 MINOS1-NBL1R4GNA1 71 aa13.14□□□□□ -0.31
TRIM28-206ENST00000595974 CLPSL1A2RUU4 121 aa13.13□□□□□ -0.31
TRIM28-206ENST00000595974 MMP23AO75900 390 aa13.13□□□□□ -0.31
TRIM28-206ENST00000595974 OR7C1O76099 320 aaPredicted RBP13.13□□□□□ -0.31
TRIM28-206ENST00000595974 MAS1P04201 325 aa13.13□□□□□ -0.31
TRIM28-206ENST00000595974 GTF2F2P13984 249 aa13.13□□□□□ -0.31
TRIM28-206ENST00000595974 CDK2P24941 298 aa13.13□□□□□ -0.31
TRIM28-206ENST00000595974 PRAMEF5Q5TYX0 476 aa13.13□□□□□ -0.31
TRIM28-206ENST00000595974 OLFML2AQ68BL7 652 aa13.13□□□□□ -0.31
TRIM28-206ENST00000595974 LIAT1Q6ZQX7 453 aa13.13□□□□□ -0.31
TRIM28-206ENST00000595974 PRSS48Q7RTY5 328 aa13.13□□□□□ -0.31
TRIM28-206ENST00000595974 RTN4RL2Q86UN3 420 aa13.13□□□□□ -0.31
TRIM28-206ENST00000595974 OR4D6Q8NGJ1 314 aa13.13□□□□□ -0.31
TRIM28-206ENST00000595974 SGMS2Q8NHU3 365 aa13.13□□□□□ -0.31
TRIM28-206ENST00000595974 UFD1Q92890 307 aa13.13□□□□□ -0.31
TRIM28-206ENST00000595974 MRPS24Q96EL2 167 aaKnown RBP13.13□□□□□ -0.31
TRIM28-206ENST00000595974 BARHL1Q9BZE3 327 aa13.13□□□□□ -0.31
TRIM28-206ENST00000595974 RAB18Q9NP72 206 aa13.13□□□□□ -0.31
TRIM28-206ENST00000595974 ING3Q9NXR8 418 aa13.13□□□□□ -0.31
TRIM28-206ENST00000595974 KIF25Q9UIL4 384 aa13.13□□□□□ -0.31
TRIM28-206ENST00000595974 BLOC1S6Q9UL45 172 aa13.13□□□□□ -0.31
TRIM28-206ENST00000595974 RAB26Q9ULW5 256 aa13.13□□□□□ -0.31
TRIM28-206ENST00000595974 MEGF11A6BM72 1044 aa13.12□□□□□ -0.31
TRIM28-206ENST00000595974 CD34P28906 385 aa13.12□□□□□ -0.31
TRIM28-206ENST00000595974 VHLP40337 213 aa13.12□□□□□ -0.31
TRIM28-206ENST00000595974 GLP1RP43220 463 aa13.12□□□□□ -0.31
TRIM28-206ENST00000595974 ACSM3Q53FZ2 586 aa13.12□□□□□ -0.31
TRIM28-206ENST00000595974 RBM48Q5RL73 367 aaKnown RBP13.12□□□□□ -0.31
TRIM28-206ENST00000595974 RSBN1Q5VWQ0 802 aaPredicted RBP13.12□□□□□ -0.31
TRIM28-206ENST00000595974 AWAT2Q6E213 333 aa13.12□□□□□ -0.31
TRIM28-206ENST00000595974 UNQ9370/PRO34162Q6UXP9 181 aa13.12□□□□□ -0.31
TRIM28-206ENST00000595974 Q6ZSV7 163 aa13.12□□□□□ -0.31
TRIM28-206ENST00000595974 LYPD6Q86Y78 171 aa13.12□□□□□ -0.31
TRIM28-206ENST00000595974 SUMF2Q8NBJ7 301 aa13.12□□□□□ -0.31
TRIM28-206ENST00000595974 WFDC12Q8WWY7 111 aa13.12□□□□□ -0.31
TRIM28-206ENST00000595974 CNBD2Q96M20 576 aa13.12□□□□□ -0.31
TRIM28-206ENST00000595974 UQCC2Q9BRT2 126 aa13.12□□□□□ -0.31
TRIM28-206ENST00000595974 TMED9Q9BVK6 235 aa13.12□□□□□ -0.31
TRIM28-206ENST00000595974 DPCDQ9BVM2 203 aaPredicted RBP13.12□□□□□ -0.31
TRIM28-206ENST00000595974 C16orf95Q9H693 158 aa13.12□□□□□ -0.31
TRIM28-206ENST00000595974 TCF7L1Q9HCS4 588 aa13.12□□□□□ -0.31
TRIM28-206ENST00000595974 ISYNA1Q9NPH2 558 aa13.12□□□□□ -0.31
TRIM28-206ENST00000595974 MEIKINA0A087WXM9 373 aa13.11□□□□□ -0.31
TRIM28-206ENST00000595974 KBTBD11-OT1A0A1B0GTJ5 212 aa13.11□□□□□ -0.31
TRIM28-206ENST00000595974 A0A1W2PP11 408 aa13.11□□□□□ -0.31
TRIM28-206ENST00000595974 GEMIN2O14893 280 aaKnown RBP13.11□□□□□ -0.31
TRIM28-206ENST00000595974 SC5DO75845 299 aa13.11□□□□□ -0.31
TRIM28-206ENST00000595974 TSPAN9O75954 239 aa13.11□□□□□ -0.31
TRIM28-206ENST00000595974 PAX6P26367 422 aa13.11□□□□□ -0.31
TRIM28-206ENST00000595974 INSL4Q14641 139 aa13.11□□□□□ -0.31
TRIM28-206ENST00000595974 SSX2Q16385 188 aa13.11□□□□□ -0.31
TRIM28-206ENST00000595974 LDLRAD2Q5SZI1 272 aa13.11□□□□□ -0.31
TRIM28-206ENST00000595974 GLIPR1L1Q6UWM5 242 aa13.11□□□□□ -0.31
TRIM28-206ENST00000595974 DYNAPQ8N1N2 210 aa13.11□□□□□ -0.31
TRIM28-206ENST00000595974 ABHD12Q8N2K0 398 aa13.11□□□□□ -0.31
TRIM28-206ENST00000595974 ZNF565Q8N9K5 539 aa13.11□□□□□ -0.31
TRIM28-206ENST00000595974 OR4P4Q8NGL7 312 aa13.11□□□□□ -0.31
TRIM28-206ENST00000595974 LINC01006Q8NI28 216 aa13.11□□□□□ -0.31
TRIM28-206ENST00000595974 NDNFQ8TB73 568 aa13.11□□□□□ -0.31
TRIM28-206ENST00000595974 PLPPR1Q8TBJ4 325 aa13.11□□□□□ -0.31
TRIM28-206ENST00000595974 ZNF596Q8TC21 504 aa13.11□□□□□ -0.31
TRIM28-206ENST00000595974 PHYHIPQ92561 330 aa13.11□□□□□ -0.31
TRIM28-206ENST00000595974 CCDC90BQ9GZT6 254 aa13.11□□□□□ -0.31
TRIM28-206ENST00000595974 SPACA1Q9HBV2 294 aa13.11□□□□□ -0.31
TRIM28-206ENST00000595974 ABCB10Q9NRK6 738 aa13.11□□□□□ -0.31
TRIM28-206ENST00000595974 RNF114Q9Y508 228 aa13.11□□□□□ -0.31
TRIM28-206ENST00000595974 A0A087X0M5 115 aa13.1□□□□□ -0.31
TRIM28-206ENST00000595974 A0A1B0GX30 115 aa13.1□□□□□ -0.31
TRIM28-206ENST00000595974 IL1AP01583 271 aa13.1□□□□□ -0.31
TRIM28-206ENST00000595974 CGB3P0DN86 165 aa13.1□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms