RNA–Protein interactions for RNA: ENST00000594504.5

UPF1-203, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 559 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-203ENST00000594504 Q8NFD4 153 aa10.14□□□□□ -0.79
UPF1-203ENST00000594504 OR4M1Q8NGD0 313 aa10.14□□□□□ -0.79
UPF1-203ENST00000594504 OR5D13Q8NGL4 314 aa10.14□□□□□ -0.79
UPF1-203ENST00000594504 OR5R1Q8NH85 324 aa10.14□□□□□ -0.79
UPF1-203ENST00000594504 SNX22Q96L94 193 aa10.14□□□□□ -0.79
UPF1-203ENST00000594504 NKX3-1Q99801 234 aaPredicted RBP10.14□□□□□ -0.79
UPF1-203ENST00000594504 METTL9Q9H1A3 318 aa10.14□□□□□ -0.79
UPF1-203ENST00000594504 PCDHB16Q9NRJ7 776 aa10.14□□□□□ -0.79
UPF1-203ENST00000594504 SF3B6Q9Y3B4 125 aaKnown RBP10.14□□□□□ -0.79
UPF1-203ENST00000594504 TMEM82A0PJX8 343 aa10.13□□□□□ -0.79
UPF1-203ENST00000594504 ZNF780AO75290 641 aaPredicted RBP10.13□□□□□ -0.79
UPF1-203ENST00000594504 ARL6IP5O75915 188 aa10.13□□□□□ -0.79
UPF1-203ENST00000594504 CDRT1O95170 752 aa10.13□□□□□ -0.79
UPF1-203ENST00000594504 OR2H2O95918 312 aa10.13□□□□□ -0.79
UPF1-203ENST00000594504 PRB2P02812 416 aaPredicted RBP10.13□□□□□ -0.79
UPF1-203ENST00000594504 CSTBP04080 98 aaKnown RBP10.13□□□□□ -0.79
UPF1-203ENST00000594504 SRMP19623 302 aa10.13□□□□□ -0.79
UPF1-203ENST00000594504 GABRR1P24046 479 aa10.13□□□□□ -0.79
UPF1-203ENST00000594504 LMO1P25800 156 aa10.13□□□□□ -0.79
UPF1-203ENST00000594504 GP2P55259 537 aaKnown RBP10.13□□□□□ -0.79
UPF1-203ENST00000594504 IL13RA2Q14627 380 aa10.13□□□□□ -0.79
UPF1-203ENST00000594504 HERPUD1Q15011 391 aa10.13□□□□□ -0.79
UPF1-203ENST00000594504 SSX1Q16384 188 aa10.13□□□□□ -0.79
UPF1-203ENST00000594504 GDPD3Q7L5L3 318 aa10.13□□□□□ -0.79
UPF1-203ENST00000594504 LYPD6Q86Y78 171 aa10.13□□□□□ -0.79
UPF1-203ENST00000594504 LYG1Q8N1E2 194 aa10.13□□□□□ -0.79
UPF1-203ENST00000594504 C11orf42Q8N5U0 333 aa10.13□□□□□ -0.79
UPF1-203ENST00000594504 CHST4Q8NCG5 386 aa10.13□□□□□ -0.79
UPF1-203ENST00000594504 OR51T1Q8NGJ9 327 aa10.13□□□□□ -0.79
UPF1-203ENST00000594504 OR10K1Q8NGX5 313 aa10.13□□□□□ -0.79
UPF1-203ENST00000594504 UQCC2Q9BRT2 126 aa10.13□□□□□ -0.79
UPF1-203ENST00000594504 MEGF9Q9H1U4 602 aa10.13□□□□□ -0.79
UPF1-203ENST00000594504 NDUFB11Q9NX14 153 aa10.13□□□□□ -0.79
UPF1-203ENST00000594504 ING4Q9UNL4 249 aa10.13□□□□□ -0.79
UPF1-203ENST00000594504 MRPS28Q9Y2Q9 187 aaKnown RBP10.13□□□□□ -0.79
UPF1-203ENST00000594504 PKD1L1Q8TDX9 2849 aa10.13□□□□□ -0.79
UPF1-203ENST00000594504 A0A1W2PPH5 198 aa10.12□□□□□ -0.79
UPF1-203ENST00000594504 SIRPB1O00241 398 aa10.12□□□□□ -0.79
UPF1-203ENST00000594504 CCRL2O00421 344 aa10.12□□□□□ -0.79
UPF1-203ENST00000594504 MGST3O14880 152 aa10.12□□□□□ -0.79
UPF1-203ENST00000594504 PSPNO60542 156 aa10.12□□□□□ -0.79
UPF1-203ENST00000594504 HTR3BO95264 441 aa10.12□□□□□ -0.79
UPF1-203ENST00000594504 TNFAIP8O95379 198 aa10.12□□□□□ -0.79
UPF1-203ENST00000594504 ZNF44P15621 663 aa10.12□□□□□ -0.79
UPF1-203ENST00000594504 CCL3L1P16619 93 aa10.12□□□□□ -0.79
UPF1-203ENST00000594504 PSMB9P28065 219 aa10.12□□□□□ -0.79
UPF1-203ENST00000594504 RAB13P51153 203 aa10.12□□□□□ -0.79
UPF1-203ENST00000594504 EFNB2P52799 333 aa10.12□□□□□ -0.79
UPF1-203ENST00000594504 FABP5Q01469 135 aa10.12□□□□□ -0.79
UPF1-203ENST00000594504 GPR176Q14439 515 aa10.12□□□□□ -0.79
UPF1-203ENST00000594504 GRK1Q15835 563 aa10.12□□□□□ -0.79
UPF1-203ENST00000594504 C2orf68Q2NKX9 166 aa10.12□□□□□ -0.79
UPF1-203ENST00000594504 NHLRC3Q5JS37 347 aa10.12□□□□□ -0.79
UPF1-203ENST00000594504 GLT8D1Q68CQ7 371 aa10.12□□□□□ -0.79
UPF1-203ENST00000594504 TMEM200BQ69YZ2 307 aa10.12□□□□□ -0.79
UPF1-203ENST00000594504 Q6P435 159 aa10.12□□□□□ -0.79
UPF1-203ENST00000594504 Q6ZTK2 550 aa10.12□□□□□ -0.79
UPF1-203ENST00000594504 LHFPL4Q7Z7J7 247 aa10.12□□□□□ -0.79
UPF1-203ENST00000594504 LRRTM1Q86UE6 522 aa10.12□□□□□ -0.79
UPF1-203ENST00000594504 OSR2Q8N2R0 312 aa10.12□□□□□ -0.79
UPF1-203ENST00000594504 PIFOQ8TCI5 191 aa10.12□□□□□ -0.79
UPF1-203ENST00000594504 MUL1Q969V5 352 aa10.12□□□□□ -0.79
UPF1-203ENST00000594504 FOXRED1Q96CU9 486 aaPredicted RBP10.12□□□□□ -0.79
UPF1-203ENST00000594504 PPIL3Q9H2H8 161 aaKnown RBP10.12□□□□□ -0.79
UPF1-203ENST00000594504 WNK1Q9H4A3 2382 aa10.11□□□□□ -0.79
UPF1-203ENST00000594504 MEX3AA1L020 520 aaKnown RBP10.11□□□□□ -0.79
UPF1-203ENST00000594504 DEGS1O15121 323 aa10.11□□□□□ -0.79
UPF1-203ENST00000594504 CHST1O43916 411 aa10.11□□□□□ -0.79
UPF1-203ENST00000594504 VSIG10L2P0DP72 767 aa10.11□□□□□ -0.79
UPF1-203ENST00000594504 GTF2F2P13984 249 aa10.11□□□□□ -0.79
UPF1-203ENST00000594504 SERPINA2P20848 420 aa10.11□□□□□ -0.79
UPF1-203ENST00000594504 GALP22466 123 aa10.11□□□□□ -0.79
UPF1-203ENST00000594504 COX7A1P24310 79 aa10.11□□□□□ -0.79
UPF1-203ENST00000594504 KIR2DS4P43632 304 aa10.11□□□□□ -0.79
UPF1-203ENST00000594504 OR3A1P47881 315 aa10.11□□□□□ -0.79
UPF1-203ENST00000594504 EDDM3BP56851 147 aa10.11□□□□□ -0.79
UPF1-203ENST00000594504 RBM11P57052 281 aaKnown RBP10.11□□□□□ -0.79
UPF1-203ENST00000594504 MEF2CQ06413 473 aaPredicted RBP10.11□□□□□ -0.79
UPF1-203ENST00000594504 SCN1BQ07699 218 aa10.11□□□□□ -0.79
UPF1-203ENST00000594504 ZNF273Q14593 569 aa10.11□□□□□ -0.79
UPF1-203ENST00000594504 LRRC75BQ2VPJ9 315 aa10.11□□□□□ -0.79
UPF1-203ENST00000594504 PIGYQ3MUY2 71 aa10.11□□□□□ -0.79
UPF1-203ENST00000594504 SLC22A6Q4U2R8 563 aa10.11□□□□□ -0.79
UPF1-203ENST00000594504 PLA1AQ53H76 456 aa10.11□□□□□ -0.79
UPF1-203ENST00000594504 AWAT2Q6E213 333 aa10.11□□□□□ -0.79
UPF1-203ENST00000594504 CD200R1LQ6Q8B3 271 aa10.11□□□□□ -0.79
UPF1-203ENST00000594504 GLIPR1L1Q6UWM5 242 aa10.11□□□□□ -0.79
UPF1-203ENST00000594504 LINC00596Q86U02 117 aa10.11□□□□□ -0.79
UPF1-203ENST00000594504 DYNAPQ8N1N2 210 aa10.11□□□□□ -0.79
UPF1-203ENST00000594504 KLHDC1Q8N7A1 406 aa10.11□□□□□ -0.79
UPF1-203ENST00000594504 OR4S1Q8NGB4 309 aa10.11□□□□□ -0.79
UPF1-203ENST00000594504 OR4D6Q8NGJ1 314 aa10.11□□□□□ -0.79
UPF1-203ENST00000594504 MRPS24Q96EL2 167 aaKnown RBP10.11□□□□□ -0.79
UPF1-203ENST00000594504 NR1H4Q96RI1 486 aaPredicted RBP10.11□□□□□ -0.79
UPF1-203ENST00000594504 CHST6Q9GZX3 395 aa10.11□□□□□ -0.79
UPF1-203ENST00000594504 GHRLQ9UBU3 117 aa10.11□□□□□ -0.79
UPF1-203ENST00000594504 ST3GAL6Q9Y274 331 aa10.11□□□□□ -0.79
UPF1-203ENST00000594504 TRDV1A0A1B0GX56 115 aa10.1□□□□□ -0.79
UPF1-203ENST00000594504 hCG_1809904A0A1W2PP81 198 aa10.1□□□□□ -0.79
UPF1-203ENST00000594504 A0A1W2PPE2 198 aa10.1□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms