RNA–Protein interactions for RNA: ENST00000590181.5

LIG3-212, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,156 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-212ENST00000590181 OR52N4Q8NGI2 321 aa8.51□□□□□ -1.05
LIG3-212ENST00000590181 OR2T6Q8NHC8 308 aa8.51□□□□□ -1.05
LIG3-212ENST00000590181 CNIH3Q8TBE1 160 aa8.51□□□□□ -1.05
LIG3-212ENST00000590181 DPM3Q9P2X0 92 aa8.51□□□□□ -1.05
LIG3-212ENST00000590181 AASSQ9UDR5 926 aa8.51□□□□□ -1.05
LIG3-212ENST00000590181 IGHV2-26A0A0B4J1V2 119 aa8.5□□□□□ -1.05
LIG3-212ENST00000590181 IGKV1-12A0A0C4DH73 117 aa8.5□□□□□ -1.05
LIG3-212ENST00000590181 KBTBD11-OT1A0A1B0GTJ5 212 aa8.5□□□□□ -1.05
LIG3-212ENST00000590181 ODAMA1E959 279 aa8.5□□□□□ -1.05
LIG3-212ENST00000590181 M0QZK8 103 aa8.5□□□□□ -1.05
LIG3-212ENST00000590181 SLC33A1O00400 549 aaPredicted RBP8.5□□□□□ -1.05
LIG3-212ENST00000590181 MYL12BO14950 172 aa8.5□□□□□ -1.05
LIG3-212ENST00000590181 IGKV1D-12P01611 117 aa8.5□□□□□ -1.05
LIG3-212ENST00000590181 TFF1P04155 84 aa8.5□□□□□ -1.05
LIG3-212ENST00000590181 GTF2F2P13984 249 aa8.5□□□□□ -1.05
LIG3-212ENST00000590181 IGFBP3P17936 291 aaPredicted RBP8.5□□□□□ -1.05
LIG3-212ENST00000590181 GTF2A1P52655 376 aaPredicted RBP8.5□□□□□ -1.05
LIG3-212ENST00000590181 GABPB1Q06547 395 aaPredicted RBP8.5□□□□□ -1.05
LIG3-212ENST00000590181 RBM39Q14498 530 aaKnown RBP8.5□□□□□ -1.05
LIG3-212ENST00000590181 EDDM3AQ14507 147 aa8.5□□□□□ -1.05
LIG3-212ENST00000590181 Q3ZCU0 254 aa8.5□□□□□ -1.05
LIG3-212ENST00000590181 OR2G6Q5TZ20 316 aa8.5□□□□□ -1.05
LIG3-212ENST00000590181 ASPHD2Q6ICH7 369 aa8.5□□□□□ -1.05
LIG3-212ENST00000590181 CRIP3Q6Q6R5 217 aa8.5□□□□□ -1.05
LIG3-212ENST00000590181 Q6ZSV7 163 aa8.5□□□□□ -1.05
LIG3-212ENST00000590181 SATL1Q86VE3 508 aa8.5□□□□□ -1.05
LIG3-212ENST00000590181 Q8N2B8 174 aa8.5□□□□□ -1.05
LIG3-212ENST00000590181 ABHD12Q8N2K0 398 aa8.5□□□□□ -1.05
LIG3-212ENST00000590181 TNFAIP8L1Q8WVP5 186 aa8.5□□□□□ -1.05
LIG3-212ENST00000590181 PHYHIPQ92561 330 aa8.5□□□□□ -1.05
LIG3-212ENST00000590181 UQCC2Q9BRT2 126 aa8.5□□□□□ -1.05
LIG3-212ENST00000590181 MND1Q9BWT6 205 aa8.5□□□□□ -1.05
LIG3-212ENST00000590181 TCF7L1Q9HCS4 588 aa8.5□□□□□ -1.05
LIG3-212ENST00000590181 TNFRSF19Q9NS68 423 aa8.5□□□□□ -1.05
LIG3-212ENST00000590181 AMMECR1Q9Y4X0 333 aaPredicted RBP8.5□□□□□ -1.05
LIG3-212ENST00000590181 SIRPB1O00241 398 aa8.49□□□□□ -1.05
LIG3-212ENST00000590181 GABRPO00591 440 aa8.49□□□□□ -1.05
LIG3-212ENST00000590181 TOR1AO14656 332 aa8.49□□□□□ -1.05
LIG3-212ENST00000590181 TSPAN15O95858 294 aa8.49□□□□□ -1.05
LIG3-212ENST00000590181 UBBP0CG47 229 aa8.49□□□□□ -1.05
LIG3-212ENST00000590181 DUSP1P28562 367 aa8.49□□□□□ -1.05
LIG3-212ENST00000590181 SCN1BQ07699 218 aa8.49□□□□□ -1.05
LIG3-212ENST00000590181 DYNC1I2Q13409 638 aaKnown RBP8.49□□□□□ -1.05
LIG3-212ENST00000590181 TRAM1Q15629 374 aa8.49□□□□□ -1.05
LIG3-212ENST00000590181 PAN3Q58A45 887 aaKnown RBP8.49□□□□□ -1.05
LIG3-212ENST00000590181 DDI2Q5TDH0 399 aa8.49□□□□□ -1.05
LIG3-212ENST00000590181 SLC35E4Q6ICL7 350 aa8.49□□□□□ -1.05
LIG3-212ENST00000590181 TRAT1Q6PIZ9 186 aa8.49□□□□□ -1.05
LIG3-212ENST00000590181 Q6ZTK2 550 aa8.49□□□□□ -1.05
LIG3-212ENST00000590181 ZNF554Q86TJ5 538 aa8.49□□□□□ -1.05
LIG3-212ENST00000590181 OSR2Q8N2R0 312 aa8.49□□□□□ -1.05
LIG3-212ENST00000590181 NANOGP1Q8N7R0 232 aa8.49□□□□□ -1.05
LIG3-212ENST00000590181 C8orf31Q8N9H6 132 aa8.49□□□□□ -1.05
LIG3-212ENST00000590181 OR52M1Q8NGK5 317 aa8.49□□□□□ -1.05
LIG3-212ENST00000590181 SPACA5Q96QH8 159 aa8.49□□□□□ -1.05
LIG3-212ENST00000590181 PRSS22Q9GZN4 317 aa8.49□□□□□ -1.05
LIG3-212ENST00000590181 CHST6Q9GZX3 395 aa8.49□□□□□ -1.05
LIG3-212ENST00000590181 PPA2Q9H2U2 334 aa8.49□□□□□ -1.05
LIG3-212ENST00000590181 FKBP14Q9NWM8 211 aa8.49□□□□□ -1.05
LIG3-212ENST00000590181 TCF19Q9Y242 345 aa8.49□□□□□ -1.05
LIG3-212ENST00000590181 ST3GAL6Q9Y274 331 aa8.49□□□□□ -1.05
LIG3-212ENST00000590181 TPRKBQ9Y3C4 175 aa8.49□□□□□ -1.05
LIG3-212ENST00000590181 LRRC42Q9Y546 428 aa8.49□□□□□ -1.05
LIG3-212ENST00000590181 DNAH3Q8TD57 4116 aa8.49□□□□□ -1.05
LIG3-212ENST00000590181 TET2Q6N021 2002 aaPredicted RBP8.49□□□□□ -1.05
LIG3-212ENST00000590181 RYR3Q15413 4870 aa8.48□□□□□ -1.05
LIG3-212ENST00000590181 TRBV5-7A0A0A0MS05 114 aa8.48□□□□□ -1.05
LIG3-212ENST00000590181 A0A1W2PRD5 423 aa8.48□□□□□ -1.05
LIG3-212ENST00000590181 A0A1W2PRF3 423 aa8.48□□□□□ -1.05
LIG3-212ENST00000590181 A0A1W2PRM7 423 aa8.48□□□□□ -1.05
LIG3-212ENST00000590181 H0YHG0 523 aa8.48□□□□□ -1.05
LIG3-212ENST00000590181 CLIC3O95833 236 aa8.48□□□□□ -1.05
LIG3-212ENST00000590181 IGLV1-47P01700 117 aa8.48□□□□□ -1.05
LIG3-212ENST00000590181 CGB3P0DN86 165 aa8.48□□□□□ -1.05
LIG3-212ENST00000590181 CGB7P0DN87 165 aa8.48□□□□□ -1.05
LIG3-212ENST00000590181 COX7A1P24310 79 aa8.48□□□□□ -1.05
LIG3-212ENST00000590181 CDK2P24941 298 aa8.48□□□□□ -1.05
LIG3-212ENST00000590181 PSMA1P25786 263 aaKnown RBP8.48□□□□□ -1.05
LIG3-212ENST00000590181 MNDAP41218 407 aa8.48□□□□□ -1.05
LIG3-212ENST00000590181 SOX2P48431 317 aa8.48□□□□□ -1.05
LIG3-212ENST00000590181 RBM11P57052 281 aaKnown RBP8.48□□□□□ -1.05
LIG3-212ENST00000590181 AESQ08117 197 aa8.48□□□□□ -1.05
LIG3-212ENST00000590181 HERPUD1Q15011 391 aa8.48□□□□□ -1.05
LIG3-212ENST00000590181 SSX2Q16385 188 aa8.48□□□□□ -1.05
LIG3-212ENST00000590181 C2orf68Q2NKX9 166 aa8.48□□□□□ -1.05
LIG3-212ENST00000590181 C6orf141Q5SZD1 244 aa8.48□□□□□ -1.05
LIG3-212ENST00000590181 ZNF782Q6ZMW2 699 aaPredicted RBP8.48□□□□□ -1.05
LIG3-212ENST00000590181 THNSL2Q86YJ6 484 aa8.48□□□□□ -1.05
LIG3-212ENST00000590181 OR5D18Q8NGL1 313 aa8.48□□□□□ -1.05
LIG3-212ENST00000590181 OR9G1Q8NH87 305 aa8.48□□□□□ -1.05
LIG3-212ENST00000590181 NDNFQ8TB73 568 aa8.48□□□□□ -1.05
LIG3-212ENST00000590181 PIFOQ8TCI5 191 aa8.48□□□□□ -1.05
LIG3-212ENST00000590181 CAPSLQ8WWF8 208 aa8.48□□□□□ -1.05
LIG3-212ENST00000590181 RGP1Q92546 391 aaPredicted RBP8.48□□□□□ -1.05
LIG3-212ENST00000590181 RFT1Q96AA3 541 aa8.48□□□□□ -1.05
LIG3-212ENST00000590181 PGLYRP3Q96LB9 341 aa8.48□□□□□ -1.05
LIG3-212ENST00000590181 ZNF184Q99676 751 aaPredicted RBP8.48□□□□□ -1.05
LIG3-212ENST00000590181 LIN7BQ9HAP6 207 aa8.48□□□□□ -1.05
LIG3-212ENST00000590181 ISYNA1Q9NPH2 558 aa8.48□□□□□ -1.05
LIG3-212ENST00000590181 TAS2R4Q9NYW5 299 aa8.48□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms