RNA–Protein interactions for RNA: ENST00000568497.6

CLN3-235, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 758 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-235ENST00000568497 AWAT2Q6E213 333 aa11.31□□□□□ -0.6
CLN3-235ENST00000568497 FIP1L1Q6UN15 594 aaKnown RBP11.31□□□□□ -0.6
CLN3-235ENST00000568497 GDPD3Q7L5L3 318 aa11.31□□□□□ -0.6
CLN3-235ENST00000568497 OR8H2Q8N162 312 aa11.31□□□□□ -0.6
CLN3-235ENST00000568497 ZSCAN4Q8NAM6 433 aaPredicted RBP11.31□□□□□ -0.6
CLN3-235ENST00000568497 C8orf46Q8TAG6 207 aa11.31□□□□□ -0.6
CLN3-235ENST00000568497 ZDHHC16Q969W1 377 aa11.31□□□□□ -0.6
CLN3-235ENST00000568497 SNX22Q96L94 193 aa11.31□□□□□ -0.6
CLN3-235ENST00000568497 BLOC1S6Q9UL45 172 aa11.31□□□□□ -0.6
CLN3-235ENST00000568497 RNF114Q9Y508 228 aa11.31□□□□□ -0.6
CLN3-235ENST00000568497 SH2D1BO14796 132 aa11.3□□□□□ -0.6
CLN3-235ENST00000568497 GPX5O75715 221 aa11.3□□□□□ -0.6
CLN3-235ENST00000568497 SC5DO75845 299 aa11.3□□□□□ -0.6
CLN3-235ENST00000568497 IGHV3-7P01780 117 aa11.3□□□□□ -0.6
CLN3-235ENST00000568497 CD1AP06126 327 aa11.3□□□□□ -0.6
CLN3-235ENST00000568497 CPT2P23786 658 aa11.3□□□□□ -0.6
CLN3-235ENST00000568497 CALRP27797 417 aaKnown RBP11.3□□□□□ -0.6
CLN3-235ENST00000568497 MTNR1BP49286 362 aa11.3□□□□□ -0.6
CLN3-235ENST00000568497 LTC4SQ16873 150 aa11.3□□□□□ -0.6
CLN3-235ENST00000568497 C2orf68Q2NKX9 166 aa11.3□□□□□ -0.6
CLN3-235ENST00000568497 PLA1AQ53H76 456 aa11.3□□□□□ -0.6
CLN3-235ENST00000568497 GPR157Q5UAW9 335 aa11.3□□□□□ -0.6
CLN3-235ENST00000568497 ZNF773Q6PK81 442 aa11.3□□□□□ -0.6
CLN3-235ENST00000568497 ASCL4Q6XD76 172 aa11.3□□□□□ -0.6
CLN3-235ENST00000568497 C9orf139Q6ZV77 190 aa11.3□□□□□ -0.6
CLN3-235ENST00000568497 SAXO1Q8IYX7 474 aa11.3□□□□□ -0.6
CLN3-235ENST00000568497 PXT1Q8NFP0 134 aa11.3□□□□□ -0.6
CLN3-235ENST00000568497 METTL9Q9H1A3 318 aa11.3□□□□□ -0.6
CLN3-235ENST00000568497 FOXJ3Q9UPW0 622 aa11.3□□□□□ -0.6
CLN3-235ENST00000568497 ST3GAL6Q9Y274 331 aa11.3□□□□□ -0.6
CLN3-235ENST00000568497 OR7C1O76099 320 aaPredicted RBP11.29□□□□□ -0.6
CLN3-235ENST00000568497 NDUFA7O95182 113 aa11.29□□□□□ -0.6
CLN3-235ENST00000568497 UCHL1P09936 223 aa11.29□□□□□ -0.6
CLN3-235ENST00000568497 SRMP19623 302 aa11.29□□□□□ -0.6
CLN3-235ENST00000568497 TGFBR1P36897 503 aa11.29□□□□□ -0.6
CLN3-235ENST00000568497 LOXL3P58215 753 aa11.29□□□□□ -0.6
CLN3-235ENST00000568497 RELBQ01201 579 aa11.29□□□□□ -0.6
CLN3-235ENST00000568497 PAN3Q58A45 887 aaKnown RBP11.29□□□□□ -0.6
CLN3-235ENST00000568497 LDLRAD2Q5SZI1 272 aa11.29□□□□□ -0.6
CLN3-235ENST00000568497 ATAD3CQ5T2N8 411 aa11.29□□□□□ -0.6
CLN3-235ENST00000568497 HES5Q5TA89 166 aa11.29□□□□□ -0.6
CLN3-235ENST00000568497 C22orf42Q6IC83 251 aa11.29□□□□□ -0.6
CLN3-235ENST00000568497 TRAPPC6BQ86SZ2 158 aa11.29□□□□□ -0.6
CLN3-235ENST00000568497 Q8IYB0 196 aa11.29□□□□□ -0.6
CLN3-235ENST00000568497 OSR2Q8N2R0 312 aa11.29□□□□□ -0.6
CLN3-235ENST00000568497 SUMF2Q8NBJ7 301 aa11.29□□□□□ -0.6
CLN3-235ENST00000568497 CCDC107Q8WV48 283 aa11.29□□□□□ -0.6
CLN3-235ENST00000568497 RBMXL1Q96E39 390 aaKnown RBP11.29□□□□□ -0.6
CLN3-235ENST00000568497 SELENOIQ9C0D9 397 aa11.29□□□□□ -0.6
CLN3-235ENST00000568497 OR51E2Q9H255 320 aa11.29□□□□□ -0.6
CLN3-235ENST00000568497 C1RLQ9NZP8 487 aa11.29□□□□□ -0.6
CLN3-235ENST00000568497 KIF25Q9UIL4 384 aa11.29□□□□□ -0.6
CLN3-235ENST00000568497 KPTNQ9Y664 436 aa11.29□□□□□ -0.6
CLN3-235ENST00000568497 TRBV23-1A0A0A0MS06 115 aa11.28□□□□□ -0.6
CLN3-235ENST00000568497 CRTAPO75718 401 aaPredicted RBP11.28□□□□□ -0.6
CLN3-235ENST00000568497 MPIG6BO95866 241 aa11.28□□□□□ -0.6
CLN3-235ENST00000568497 CSTBP04080 98 aaKnown RBP11.28□□□□□ -0.6
CLN3-235ENST00000568497 P2RX3P56373 397 aa11.28□□□□□ -0.6
CLN3-235ENST00000568497 RBM11P57052 281 aaKnown RBP11.28□□□□□ -0.6
CLN3-235ENST00000568497 KRBOX4Q5JUW0 171 aa11.28□□□□□ -0.6
CLN3-235ENST00000568497 LHFPL4Q7Z7J7 247 aa11.28□□□□□ -0.6
CLN3-235ENST00000568497 MS4A15Q8N5U1 240 aa11.28□□□□□ -0.6
CLN3-235ENST00000568497 OR13A1Q8NGR1 328 aa11.28□□□□□ -0.6
CLN3-235ENST00000568497 LEAP2Q969E1 77 aa11.28□□□□□ -0.6
CLN3-235ENST00000568497 S100A13Q99584 98 aa11.28□□□□□ -0.6
CLN3-235ENST00000568497 NICN1Q9BSH3 213 aa11.28□□□□□ -0.6
CLN3-235ENST00000568497 FAM234AQ9H0X4 552 aa11.28□□□□□ -0.6
CLN3-235ENST00000568497 ISYNA1Q9NPH2 558 aa11.28□□□□□ -0.6
CLN3-235ENST00000568497 LRRC42Q9Y546 428 aa11.28□□□□□ -0.6
CLN3-235ENST00000568497 A0A0A6YYD4 124 aa11.27□□□□□ -0.61
CLN3-235ENST00000568497 UBE2QL1A1L167 161 aa11.27□□□□□ -0.61
CLN3-235ENST00000568497 MEIOCA2RUB1 952 aa11.27□□□□□ -0.61
CLN3-235ENST00000568497 MGST3O14880 152 aa11.27□□□□□ -0.61
CLN3-235ENST00000568497 NPFFO15130 113 aa11.27□□□□□ -0.61
CLN3-235ENST00000568497 CSF1P09603 554 aa11.27□□□□□ -0.61
CLN3-235ENST00000568497 CLEC2LP0C7M8 214 aa11.27□□□□□ -0.61
CLN3-235ENST00000568497 GABRA5P31644 462 aa11.27□□□□□ -0.61
CLN3-235ENST00000568497 SAA4P35542 130 aa11.27□□□□□ -0.61
CLN3-235ENST00000568497 GLP1RP43220 463 aa11.27□□□□□ -0.61
CLN3-235ENST00000568497 SPIN3Q5JUX0 258 aa11.27□□□□□ -0.61
CLN3-235ENST00000568497 KPRPQ5T749 579 aaPredicted RBP11.27□□□□□ -0.61
CLN3-235ENST00000568497 UBE2UQ5VVX9 321 aa11.27□□□□□ -0.61
CLN3-235ENST00000568497 SIGIRRQ6IA17 410 aa11.27□□□□□ -0.61
CLN3-235ENST00000568497 ELP2Q6IA86 826 aa11.27□□□□□ -0.61
CLN3-235ENST00000568497 CMTM4Q8IZR5 234 aa11.27□□□□□ -0.61
CLN3-235ENST00000568497 DYNAPQ8N1N2 210 aa11.27□□□□□ -0.61
CLN3-235ENST00000568497 SVOPQ8N4V2 548 aa11.27□□□□□ -0.61
CLN3-235ENST00000568497 OR51T1Q8NGJ9 327 aa11.27□□□□□ -0.61
CLN3-235ENST00000568497 RFESDQ8TAC1 157 aa11.27□□□□□ -0.61
CLN3-235ENST00000568497 MRGPRDQ8TDS7 321 aa11.27□□□□□ -0.61
CLN3-235ENST00000568497 FOXRED1Q96CU9 486 aaPredicted RBP11.27□□□□□ -0.61
CLN3-235ENST00000568497 AJUBAQ96IF1 538 aa11.27□□□□□ -0.61
CLN3-235ENST00000568497 DPCDQ9BVM2 203 aaPredicted RBP11.27□□□□□ -0.61
CLN3-235ENST00000568497 PRDM13Q9H4Q3 707 aa11.27□□□□□ -0.61
CLN3-235ENST00000568497 GLS2Q9UI32 602 aa11.27□□□□□ -0.61
CLN3-235ENST00000568497 ODAMA1E959 279 aa11.26□□□□□ -0.61
CLN3-235ENST00000568497 M0R1W7 72 aa11.26□□□□□ -0.61
CLN3-235ENST00000568497 GPR37O15354 613 aa11.26□□□□□ -0.61
CLN3-235ENST00000568497 IGHV4-59P01825 116 aa11.26□□□□□ -0.61
CLN3-235ENST00000568497 ZNF728P0DKX0 622 aa11.26□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms