RNA–Protein interactions for RNA: ENST00000568232.1

CLK3-222, Transcript of CDC like kinase 3, humanhuman

Gene CLK3, Length 958 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-222ENST00000568232 NUFIP1Q9UHK0 495 aaKnown RBP9.03□□□□□ -0.96
CLK3-222ENST00000568232 LAMP5Q9UJQ1 280 aa9.03□□□□□ -0.96
CLK3-222ENST00000568232 GTF2A1LQ9UNN4 478 aa9.03□□□□□ -0.96
CLK3-222ENST00000568232 WSB1Q9Y6I7 421 aa9.03□□□□□ -0.96
CLK3-222ENST00000568232 IGHV4OR15-8A0A075B7B6 117 aa9.02□□□□□ -0.97
CLK3-222ENST00000568232 A0A087WW49 117 aa9.02□□□□□ -0.97
CLK3-222ENST00000568232 IGHV1-3A0A0C4DH29 117 aa9.02□□□□□ -0.97
CLK3-222ENST00000568232 A0A1B0GTI1 187 aa9.02□□□□□ -0.97
CLK3-222ENST00000568232 LINC01619G3V211 115 aa9.02□□□□□ -0.97
CLK3-222ENST00000568232 HSPA12AO43301 675 aa9.02□□□□□ -0.97
CLK3-222ENST00000568232 CCDC22O60826 627 aa9.02□□□□□ -0.97
CLK3-222ENST00000568232 OR2H2O95918 312 aa9.02□□□□□ -0.97
CLK3-222ENST00000568232 IGF1P05019 195 aa9.02□□□□□ -0.97
CLK3-222ENST00000568232 FABP3P05413 133 aa9.02□□□□□ -0.97
CLK3-222ENST00000568232 OR8U9P0C7N5 309 aa9.02□□□□□ -0.97
CLK3-222ENST00000568232 PRKACAP17612 351 aa9.02□□□□□ -0.97
CLK3-222ENST00000568232 PPIFP30405 207 aaKnown RBP9.02□□□□□ -0.97
CLK3-222ENST00000568232 F2RL1P55085 397 aa9.02□□□□□ -0.97
CLK3-222ENST00000568232 PPP1R8Q12972 351 aaKnown RBP9.02□□□□□ -0.97
CLK3-222ENST00000568232 BNIP1Q12981 228 aa9.02□□□□□ -0.97
CLK3-222ENST00000568232 ZNF146Q15072 292 aa9.02□□□□□ -0.97
CLK3-222ENST00000568232 LTC4SQ16873 150 aa9.02□□□□□ -0.97
CLK3-222ENST00000568232 ENTHD1Q8IYW4 607 aa9.02□□□□□ -0.97
CLK3-222ENST00000568232 HOPXQ9BPY8 73 aaPredicted RBP9.02□□□□□ -0.97
CLK3-222ENST00000568232 ST6GALNAC5Q9BVH7 336 aa9.02□□□□□ -0.97
CLK3-222ENST00000568232 PPIL3Q9H2H8 161 aaKnown RBP9.02□□□□□ -0.97
CLK3-222ENST00000568232 TUBA4BQ9H853 241 aa9.02□□□□□ -0.97
CLK3-222ENST00000568232 ACTR3BQ9P1U1 418 aa9.02□□□□□ -0.97
CLK3-222ENST00000568232 KBTBD11-OT1A0A1B0GTJ5 212 aa9.01□□□□□ -0.97
CLK3-222ENST00000568232 ZNF729A6NN14 1252 aaPredicted RBP9.01□□□□□ -0.97
CLK3-222ENST00000568232 ZNF736B4DX44 427 aaPredicted RBP9.01□□□□□ -0.97
CLK3-222ENST00000568232 HSD17B6O14756 317 aa9.01□□□□□ -0.97
CLK3-222ENST00000568232 IGLV1-51P01701 117 aa9.01□□□□□ -0.97
CLK3-222ENST00000568232 IGLV1-40P01703 118 aa9.01□□□□□ -0.97
CLK3-222ENST00000568232 SOX6P35712 828 aa9.01□□□□□ -0.97
CLK3-222ENST00000568232 RAB9AP51151 201 aa9.01□□□□□ -0.97
CLK3-222ENST00000568232 MNAT1P51948 309 aa9.01□□□□□ -0.97
CLK3-222ENST00000568232 PITPNAQ00169 270 aa9.01□□□□□ -0.97
CLK3-222ENST00000568232 SCN1BQ07699 218 aa9.01□□□□□ -0.97
CLK3-222ENST00000568232 KRBOX4Q5JUW0 171 aa9.01□□□□□ -0.97
CLK3-222ENST00000568232 AQP11Q8NBQ7 271 aa9.01□□□□□ -0.97
CLK3-222ENST00000568232 BBS1Q8NFJ9 593 aa9.01□□□□□ -0.97
CLK3-222ENST00000568232 OR2T10Q8NGZ9 312 aa9.01□□□□□ -0.97
CLK3-222ENST00000568232 HAVCR2Q8TDQ0 301 aa9.01□□□□□ -0.97
CLK3-222ENST00000568232 MCUR1Q96AQ8 359 aa9.01□□□□□ -0.97
CLK3-222ENST00000568232 RSRP1Q9BUV0 290 aa9.01□□□□□ -0.97
CLK3-222ENST00000568232 MROQ9BYG7 248 aa9.01□□□□□ -0.97
CLK3-222ENST00000568232 TPSG1Q9NRR2 321 aa9.01□□□□□ -0.97
CLK3-222ENST00000568232 GSTK1Q9Y2Q3 226 aa9.01□□□□□ -0.97
CLK3-222ENST00000568232 TRBV2A0A0J9YWF9 115 aa9□□□□□ -0.97
CLK3-222ENST00000568232 FUOMA2VDF0 154 aa9□□□□□ -0.97
CLK3-222ENST00000568232 A6NJY4 79 aa9□□□□□ -0.97
CLK3-222ENST00000568232 TNFRSF11BO00300 401 aa9□□□□□ -0.97
CLK3-222ENST00000568232 SH2D1BO14796 132 aa9□□□□□ -0.97
CLK3-222ENST00000568232 MAGEB4O15481 346 aaPredicted RBP9□□□□□ -0.97
CLK3-222ENST00000568232 SRSF10O75494 262 aaKnown RBP9□□□□□ -0.97
CLK3-222ENST00000568232 CGB3P0DN86 165 aa9□□□□□ -0.97
CLK3-222ENST00000568232 CGB7P0DN87 165 aa9□□□□□ -0.97
CLK3-222ENST00000568232 HMGA2P52926 109 aa9□□□□□ -0.97
CLK3-222ENST00000568232 CDC42P60953 191 aa9□□□□□ -0.97
CLK3-222ENST00000568232 TNP2Q05952 138 aa9□□□□□ -0.97
CLK3-222ENST00000568232 RIPK1Q13546 671 aa9□□□□□ -0.97
CLK3-222ENST00000568232 ATXN7L3Q14CW9 347 aaPredicted RBP9□□□□□ -0.97
CLK3-222ENST00000568232 KIAA2026Q5HYC2 2103 aa9□□□□□ -0.97
CLK3-222ENST00000568232 DEGS2Q6QHC5 323 aa9□□□□□ -0.97
CLK3-222ENST00000568232 PLEKHG7Q6ZR37 379 aa9□□□□□ -0.97
CLK3-222ENST00000568232 IZUMO1Q8IYV9 350 aa9□□□□□ -0.97
CLK3-222ENST00000568232 ARHGAP24Q8N264 748 aa9□□□□□ -0.97
CLK3-222ENST00000568232 OR10X1Q8NGY0 326 aa9□□□□□ -0.97
CLK3-222ENST00000568232 RFESDQ8TAC1 157 aa9□□□□□ -0.97
CLK3-222ENST00000568232 CASTOR1Q8WTX7 329 aa9□□□□□ -0.97
CLK3-222ENST00000568232 MNTQ99583 582 aa9□□□□□ -0.97
CLK3-222ENST00000568232 TOLLIPQ9H0E2 274 aa9□□□□□ -0.97
CLK3-222ENST00000568232 EXOSC4Q9NPD3 245 aaKnown RBP9□□□□□ -0.97
CLK3-222ENST00000568232 IL1RAPQ9NPH3 570 aa9□□□□□ -0.97
CLK3-222ENST00000568232 COPS3Q9UNS2 423 aa9□□□□□ -0.97
CLK3-222ENST00000568232 VPS13DQ5THJ4 4388 aa9□□□□□ -0.97
CLK3-222ENST00000568232 LOC110117498-PIK3R3F6TDL0 507 aa8.99□□□□□ -0.97
CLK3-222ENST00000568232 CCNB2O95067 398 aa8.99□□□□□ -0.97
CLK3-222ENST00000568232 GAPDHP04406 335 aaKnown RBP8.99□□□□□ -0.97
CLK3-222ENST00000568232 MRPL3P09001 348 aaKnown RBP8.99□□□□□ -0.97
CLK3-222ENST00000568232 OR5H8P0DN80 308 aa8.99□□□□□ -0.97
CLK3-222ENST00000568232 SLC2A2P11168 524 aaPredicted RBP8.99□□□□□ -0.97
CLK3-222ENST00000568232 COX4I1P13073 169 aa8.99□□□□□ -0.97
CLK3-222ENST00000568232 GLP1RP43220 463 aa8.99□□□□□ -0.97
CLK3-222ENST00000568232 KIR3DL2P43630 455 aa8.99□□□□□ -0.97
CLK3-222ENST00000568232 FUT6P51993 359 aa8.99□□□□□ -0.97
CLK3-222ENST00000568232 ZNF816Q0VGE8 651 aaPredicted RBP8.99□□□□□ -0.97
CLK3-222ENST00000568232 PMS2P11Q13670 270 aa8.99□□□□□ -0.97
CLK3-222ENST00000568232 ODF4Q2M2E3 257 aa8.99□□□□□ -0.97
CLK3-222ENST00000568232 ZNF829Q3KNS6 432 aaPredicted RBP8.99□□□□□ -0.97
CLK3-222ENST00000568232 SPIN3Q5JUX0 258 aa8.99□□□□□ -0.97
CLK3-222ENST00000568232 BCL2L15Q5TBC7 163 aa8.99□□□□□ -0.97
CLK3-222ENST00000568232 ANKRD13BQ86YJ7 626 aa8.99□□□□□ -0.97
CLK3-222ENST00000568232 Q8IYB0 196 aa8.99□□□□□ -0.97
CLK3-222ENST00000568232 ZNF679Q8IYX0 411 aa8.99□□□□□ -0.97
CLK3-222ENST00000568232 ELMOD2Q8IZ81 293 aa8.99□□□□□ -0.97
CLK3-222ENST00000568232 TMEM104Q8NE00 496 aa8.99□□□□□ -0.97
CLK3-222ENST00000568232 OR13A1Q8NGR1 328 aa8.99□□□□□ -0.97
CLK3-222ENST00000568232 OSBPL10Q9BXB5 764 aa8.99□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 70.4 ms