RNA–Protein interactions for RNA: ENST00000566824.6

CLN3-225, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,326 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-225ENST00000566824 MPV17LQ2QL34 196 aa16.01■□□□□ 0.15
CLN3-225ENST00000566824 OR13F1Q8NGS4 319 aa16.01■□□□□ 0.15
CLN3-225ENST00000566824 FAM3DQ96BQ1 224 aa16.01■□□□□ 0.15
CLN3-225ENST00000566824 MRPS24Q96EL2 167 aaKnown RBP16.01■□□□□ 0.15
CLN3-225ENST00000566824 DMRTB1Q96MA1 342 aa16.01■□□□□ 0.15
CLN3-225ENST00000566824 SLC6A7Q99884 636 aa16.01■□□□□ 0.15
CLN3-225ENST00000566824 RCC2Q9P258 522 aaKnown RBP16.01■□□□□ 0.15
CLN3-225ENST00000566824 KIF25Q9UIL4 384 aa16.01■□□□□ 0.15
CLN3-225ENST00000566824 A0A1W2PRD5 423 aa16■□□□□ 0.15
CLN3-225ENST00000566824 A0A1W2PRF3 423 aa16■□□□□ 0.15
CLN3-225ENST00000566824 A0A1W2PRM7 423 aa16■□□□□ 0.15
CLN3-225ENST00000566824 ODAMA1E959 279 aa16■□□□□ 0.15
CLN3-225ENST00000566824 IFITM5A6NNB3 132 aa16■□□□□ 0.15
CLN3-225ENST00000566824 LDLRAD4O15165 306 aa16■□□□□ 0.15
CLN3-225ENST00000566824 MMP23AO75900 390 aa16■□□□□ 0.15
CLN3-225ENST00000566824 RIPPLY3P57055 190 aa16■□□□□ 0.15
CLN3-225ENST00000566824 MXD1Q05195 221 aa16■□□□□ 0.15
CLN3-225ENST00000566824 MEF2CQ06413 473 aaPredicted RBP16■□□□□ 0.15
CLN3-225ENST00000566824 C2orf76Q3KRA6 126 aa16■□□□□ 0.15
CLN3-225ENST00000566824 KRBOX4Q5JUW0 171 aa16■□□□□ 0.15
CLN3-225ENST00000566824 RSBN1Q5VWQ0 802 aaPredicted RBP16■□□□□ 0.15
CLN3-225ENST00000566824 C1orf122Q6ZSJ8 110 aa16■□□□□ 0.15
CLN3-225ENST00000566824 LINC00596Q86U02 117 aa16■□□□□ 0.15
CLN3-225ENST00000566824 CMTM4Q8IZR5 234 aa16■□□□□ 0.15
CLN3-225ENST00000566824 PPP1R35Q8TAP8 253 aa16■□□□□ 0.15
CLN3-225ENST00000566824 DYRK2Q92630 601 aa16■□□□□ 0.15
CLN3-225ENST00000566824 KCTD7Q96MP8 289 aa16■□□□□ 0.15
CLN3-225ENST00000566824 FUNDC2Q9BWH2 189 aa16■□□□□ 0.15
CLN3-225ENST00000566824 MRPS26Q9BYN8 205 aaKnown RBP16■□□□□ 0.15
CLN3-225ENST00000566824 CST11Q9H112 138 aa16■□□□□ 0.15
CLN3-225ENST00000566824 LPAR5Q9H1C0 372 aa16■□□□□ 0.15
CLN3-225ENST00000566824 STEAP1Q9UHE8 339 aa16■□□□□ 0.15
CLN3-225ENST00000566824 ATRQ13535 2644 aa16■□□□□ 0.15
CLN3-225ENST00000566824 C17orf98A8MV24 154 aa15.99■□□□□ 0.15
CLN3-225ENST00000566824 AIREO43918 545 aa15.99■□□□□ 0.15
CLN3-225ENST00000566824 TFAP2AP05549 437 aa15.99■□□□□ 0.15
CLN3-225ENST00000566824 ZNF728P0DKX0 622 aa15.99■□□□□ 0.15
CLN3-225ENST00000566824 ARSBP15848 533 aa15.99■□□□□ 0.15
CLN3-225ENST00000566824 PRTN3P24158 256 aa15.99■□□□□ 0.15
CLN3-225ENST00000566824 EFNB2P52799 333 aa15.99■□□□□ 0.15
CLN3-225ENST00000566824 TUSC1Q2TAM9 212 aa15.99■□□□□ 0.15
CLN3-225ENST00000566824 RAB12Q6IQ22 244 aa15.99■□□□□ 0.15
CLN3-225ENST00000566824 BAIAP2L2Q6UXY1 529 aa15.99■□□□□ 0.15
CLN3-225ENST00000566824 ZNF782Q6ZMW2 699 aaPredicted RBP15.99■□□□□ 0.15
CLN3-225ENST00000566824 KCNG3Q8TAE7 436 aa15.99■□□□□ 0.15
CLN3-225ENST00000566824 ZNF48Q96MX3 618 aaPredicted RBP15.99■□□□□ 0.15
CLN3-225ENST00000566824 TMEM59Q9BXS4 323 aa15.99■□□□□ 0.15
CLN3-225ENST00000566824 NAA50Q9GZZ1 169 aaKnown RBP15.99■□□□□ 0.15
CLN3-225ENST00000566824 LINC00312Q9Y6C7 94 aa15.99■□□□□ 0.15
CLN3-225ENST00000566824 IGHV1-69DA0A0B4J2H0 117 aa15.98■□□□□ 0.15
CLN3-225ENST00000566824 TMEM272A0A1B0GTI8 110 aa15.98■□□□□ 0.15
CLN3-225ENST00000566824 MDFIC2A0A1B0GVS7 189 aa15.98■□□□□ 0.15
CLN3-225ENST00000566824 hADV38S2A0JD32 116 aa15.98■□□□□ 0.15
CLN3-225ENST00000566824 IGHV1-69P01742 117 aa15.98■□□□□ 0.15
CLN3-225ENST00000566824 CFPP27918 469 aa15.98■□□□□ 0.15
CLN3-225ENST00000566824 GDNFP39905 211 aa15.98■□□□□ 0.15
CLN3-225ENST00000566824 ALDH3B2P48448 385 aa15.98■□□□□ 0.15
CLN3-225ENST00000566824 PSMD7P51665 324 aa15.98■□□□□ 0.15
CLN3-225ENST00000566824 UTF1Q5T230 341 aa15.98■□□□□ 0.15
CLN3-225ENST00000566824 PIP4P2Q8N4L2 257 aa15.98■□□□□ 0.15
CLN3-225ENST00000566824 OR13A1Q8NGR1 328 aa15.98■□□□□ 0.15
CLN3-225ENST00000566824 TM2D1Q9BX74 207 aa15.98■□□□□ 0.15
CLN3-225ENST00000566824 METTL8Q9H825 291 aaKnown RBP15.98■□□□□ 0.15
CLN3-225ENST00000566824 UNKLQ9H9P5 680 aaKnown RBP15.98■□□□□ 0.15
CLN3-225ENST00000566824 PEX16Q9Y5Y5 336 aa15.98■□□□□ 0.15
CLN3-225ENST00000566824 UBE2QL1A1L167 161 aa15.97■□□□□ 0.15
CLN3-225ENST00000566824 AIPO00170 330 aa15.97■□□□□ 0.15
CLN3-225ENST00000566824 SOCS1O15524 211 aa15.97■□□□□ 0.15
CLN3-225ENST00000566824 CGB3P0DN86 165 aa15.97■□□□□ 0.15
CLN3-225ENST00000566824 CGB7P0DN87 165 aa15.97■□□□□ 0.15
CLN3-225ENST00000566824 GPR157Q5UAW9 335 aa15.97■□□□□ 0.15
CLN3-225ENST00000566824 SLC16A12Q6ZSM3 486 aa15.97■□□□□ 0.15
CLN3-225ENST00000566824 OR2W3Q7Z3T1 314 aa15.97■□□□□ 0.15
CLN3-225ENST00000566824 TRAPPC6BQ86SZ2 158 aa15.97■□□□□ 0.15
CLN3-225ENST00000566824 TPRA1Q86W33 373 aa15.97■□□□□ 0.15
CLN3-225ENST00000566824 TEX29Q8N6K0 151 aa15.97■□□□□ 0.15
CLN3-225ENST00000566824 CORO2AQ92828 525 aa15.97■□□□□ 0.15
CLN3-225ENST00000566824 ZNF714Q96N38 554 aa15.97■□□□□ 0.15
CLN3-225ENST00000566824 OCEL1Q9H607 264 aa15.97■□□□□ 0.15
CLN3-225ENST00000566824 MEIKINA0A087WXM9 373 aa15.96■□□□□ 0.15
CLN3-225ENST00000566824 FAM90A10PA6NDY2 464 aa15.96■□□□□ 0.15
CLN3-225ENST00000566824 FAM90A18PA6NE21 464 aa15.96■□□□□ 0.15
CLN3-225ENST00000566824 FAM90A16PA6NEW6 464 aa15.96■□□□□ 0.15
CLN3-225ENST00000566824 FAM90A20PA6NIJ5 464 aa15.96■□□□□ 0.15
CLN3-225ENST00000566824 FAM90A8PA6NJQ4 464 aa15.96■□□□□ 0.15
CLN3-225ENST00000566824 FAM90A7PA6NKC0 464 aa15.96■□□□□ 0.15
CLN3-225ENST00000566824 FOXI3A8MTJ6 420 aaPredicted RBP15.96■□□□□ 0.15
CLN3-225ENST00000566824 NOTOA8MTQ0 251 aa15.96■□□□□ 0.15
CLN3-225ENST00000566824 FAM90A22PA8MWA6 464 aa15.96■□□□□ 0.15
CLN3-225ENST00000566824 FAM90A12PA8MX19 464 aa15.96■□□□□ 0.15
CLN3-225ENST00000566824 FAM90A5PA8MXJ8 464 aa15.96■□□□□ 0.15
CLN3-225ENST00000566824 FAM90A23PA8MXZ1 464 aa15.96■□□□□ 0.15
CLN3-225ENST00000566824 FAM90A15PP0C7V4 464 aa15.96■□□□□ 0.15
CLN3-225ENST00000566824 FAM90A13PP0C7W8 464 aa15.96■□□□□ 0.15
CLN3-225ENST00000566824 FAM90A14PP0C7W9 464 aa15.96■□□□□ 0.15
CLN3-225ENST00000566824 FAM90A24PP0C7X0 464 aa15.96■□□□□ 0.15
CLN3-225ENST00000566824 FUT3P21217 361 aa15.96■□□□□ 0.15
CLN3-225ENST00000566824 CHATP28329 748 aa15.96■□□□□ 0.15
CLN3-225ENST00000566824 C17orf58Q2M2W7 97 aa15.96■□□□□ 0.15
CLN3-225ENST00000566824 NKAPLQ5M9Q1 402 aa15.96■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms